Wall clock time and date at job start Tue Mar 24 2020 09:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38226 * 120.00070 * 2 1 4 4 C 1.38243 * 120.00022 * 179.97438 * 3 2 1 5 5 C 1.38230 * 119.99911 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00134 * 179.97438 * 5 4 3 7 7 O 1.42906 * 109.46831 * 30.00568 * 6 5 4 8 8 Si 1.86300 * 109.47007 * 149.99957 * 6 5 4 9 9 H 1.48503 * 109.46942 * 60.00611 * 8 6 5 10 10 H 1.48503 * 109.47276 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47372 * 300.00074 * 8 6 5 12 12 C 1.50698 * 109.47576 * 270.00428 * 6 5 4 13 13 O 1.21274 * 120.00414 * 125.00072 * 12 6 5 14 14 N 1.34776 * 119.99626 * 305.00023 * 12 6 5 15 15 C 1.46500 * 120.00293 * 179.97438 * 14 12 6 16 16 C 1.50698 * 109.47431 * 179.97438 * 15 14 12 17 17 C 1.37872 * 119.93665 * 104.72795 * 16 15 14 18 18 C 1.39661 * 119.87456 * 179.75290 * 17 16 15 19 19 C 1.43200 * 120.12715 * 180.25352 * 18 17 16 20 20 N 8.16776 * 95.64890 * 251.33714 * 2 1 3 21 21 C 1.39710 * 119.74841 * 0.53624 * 18 17 16 22 22 C 1.37829 * 119.87365 * 359.71375 * 21 18 17 23 23 C 1.38615 * 119.93874 * 284.99573 * 16 15 14 24 24 F 1.35107 * 119.87326 * 0.02562 * 23 16 15 25 25 C 1.38241 * 120.00023 * 0.27991 * 5 4 3 26 26 C 1.38234 * 119.99684 * 359.51018 * 25 5 4 27 27 H 1.09000 * 109.47467 * 89.99787 * 1 2 3 28 28 H 1.09001 * 109.47401 * 209.99945 * 1 2 3 29 29 H 1.09003 * 109.47037 * 330.00095 * 1 2 3 30 30 H 1.08000 * 120.00265 * 359.97438 * 3 2 1 31 31 H 1.07992 * 119.99854 * 180.02562 * 4 3 2 32 32 H 0.97003 * 120.00627 * 359.97438 * 14 12 6 33 33 H 1.09001 * 109.46823 * 300.00504 * 15 14 12 34 34 H 1.09002 * 109.46583 * 59.99491 * 15 14 12 35 35 H 1.08001 * 120.06244 * 0.02562 * 17 16 15 36 36 H 1.08007 * 120.06316 * 179.69062 * 21 18 17 37 37 H 1.08003 * 119.93856 * 179.97438 * 22 21 18 38 38 H 1.08000 * 119.99931 * 179.72964 * 25 5 4 39 39 H 1.08000 * 119.99852 * 180.28050 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5806 1.1970 0.0005 5 6 4.2717 -0.0001 0.0016 6 6 5.7787 -0.0001 0.0016 7 8 6.2550 1.1672 0.6744 8 14 6.3995 -1.5205 0.8812 9 1 5.9046 -2.7336 0.1821 10 1 7.8846 -1.5203 0.8818 11 1 5.9046 -1.5193 2.2812 12 6 6.2811 -0.0013 -1.4191 13 8 7.0513 0.8586 -1.7908 14 7 5.8745 -0.9582 -2.2768 15 6 6.3624 -0.9591 -3.6582 16 6 5.7621 -2.1240 -4.4023 17 6 4.7451 -1.9111 -5.3086 18 6 4.1932 -2.9910 -6.0012 19 6 3.1405 -2.7754 -6.9478 20 7 2.3110 -2.6010 -7.7007 21 6 4.6680 -4.2832 -5.7628 22 6 5.6815 -4.4847 -4.8507 23 6 6.2295 -3.4082 -4.1701 24 9 7.2222 -3.6117 -3.2765 25 6 3.5805 -1.1973 -0.0037 26 6 2.1981 -1.1972 0.0001 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6582 2.1324 -0.0004 31 1 4.1205 2.1323 0.0010 32 1 5.2588 -1.6463 -1.9796 33 1 6.0738 -0.0281 -4.1461 34 1 7.4488 -1.0484 -3.6597 35 1 4.3790 -0.9106 -5.4858 36 1 4.2414 -5.1226 -6.2919 37 1 6.0490 -5.4832 -4.6653 38 1 4.1205 -2.1326 -0.0073 39 1 1.6581 -2.1325 0.0006 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361882314.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 24 2020 09:38:03 Heat of formation + Delta-G solvation = -88.405072 kcal Electronic energy + Delta-G solvation = -26971.206660 eV Core-core repulsion = 22950.245347 eV Total energy + Delta-G solvation = -4020.961313 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.106 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.01241 -40.93708 -40.35129 -39.57290 -37.60664 -35.85636 -34.91634 -32.59190 -32.06556 -32.02087 -31.58677 -28.50026 -27.24897 -24.95499 -24.70470 -23.40647 -23.18490 -21.95444 -20.79692 -19.54352 -18.63682 -17.87900 -17.82111 -17.10599 -16.81712 -16.49352 -16.37806 -15.79278 -15.55515 -15.36773 -15.09996 -15.02458 -14.85879 -14.73331 -14.56796 -14.29614 -14.24150 -14.11978 -13.96354 -13.57401 -13.38517 -13.20364 -12.99771 -12.93012 -12.71267 -12.32524 -12.22565 -12.06791 -12.00445 -11.72262 -11.34726 -10.93762 -10.19215 -9.99139 -9.79353 -9.68818 -9.19899 -8.34910 -7.76859 -0.45936 0.05272 0.56462 0.66215 1.20095 1.32119 1.43989 1.59118 1.72045 1.95383 2.42435 2.61402 2.74079 2.83772 3.10287 3.12725 3.40043 3.66947 3.98594 4.09117 4.10891 4.15662 4.30248 4.39713 4.48541 4.51210 4.63785 4.68869 4.79224 4.81097 4.92296 4.96127 5.00492 5.01934 5.09907 5.11395 5.14025 5.33346 5.43827 5.58703 5.64970 5.69464 5.81855 6.07753 6.32985 6.41260 6.67570 7.43892 7.89970 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.010082 B = 0.005081 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2776.586942 B = 5509.506081 C = 7037.310489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.108 4.108 3 C -0.127 4.127 4 C -0.118 4.118 5 C -0.089 4.089 6 C -0.028 4.028 7 O -0.901 6.901 8 Si 0.959 3.041 9 H -0.212 1.212 10 H -0.308 1.308 11 H -0.275 1.275 12 C 0.491 3.509 13 O -0.592 6.592 14 N -0.724 5.724 15 C 0.155 3.845 16 C -0.145 4.145 17 C -0.018 4.018 18 C -0.043 4.043 19 C 0.283 3.717 20 N -0.458 5.458 21 C -0.013 4.013 22 C -0.139 4.139 23 C 0.133 3.867 24 F -0.139 7.139 25 C -0.155 4.155 26 C -0.108 4.108 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.130 0.870 31 H 0.076 0.924 32 H 0.405 0.595 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.147 0.853 36 H 0.181 0.819 37 H 0.180 0.820 38 H 0.136 0.864 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.086 -17.636 -11.590 23.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.108 4.108 3 C -0.145 4.145 4 C -0.137 4.137 5 C -0.090 4.090 6 C -0.128 4.128 7 O -0.848 6.848 8 Si 0.783 3.217 9 H -0.137 1.137 10 H -0.236 1.236 11 H -0.200 1.200 12 C 0.281 3.719 13 O -0.471 6.471 14 N -0.382 5.382 15 C 0.032 3.968 16 C -0.147 4.147 17 C -0.039 4.039 18 C -0.046 4.046 19 C -0.031 4.031 20 N -0.133 5.133 21 C -0.033 4.033 22 C -0.158 4.158 23 C 0.112 3.888 24 F -0.118 7.118 25 C -0.173 4.173 26 C -0.126 4.126 27 H 0.097 0.903 28 H 0.102 0.898 29 H 0.086 0.914 30 H 0.147 0.853 31 H 0.094 0.906 32 H 0.241 0.759 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.165 0.835 36 H 0.198 0.802 37 H 0.198 0.802 38 H 0.154 0.846 39 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -10.411 -17.206 -12.428 23.641 hybrid contribution 1.174 1.236 0.772 1.871 sum -9.237 -15.971 -11.657 21.823 Atomic orbital electron populations 1.20749 0.88380 1.03594 1.03024 1.20230 0.97733 0.92325 1.00508 1.21209 0.92538 0.99154 1.01581 1.20896 0.94540 0.97813 1.00420 1.21046 0.97139 0.94061 0.96797 1.23428 0.91561 1.07534 0.90263 1.94977 1.83486 1.35064 1.71236 0.86120 0.77952 0.75986 0.81594 1.13655 1.23553 1.20049 1.23550 0.79415 0.79320 0.89572 1.90400 1.37980 1.39702 1.79046 1.46314 1.49926 1.31334 1.10590 1.20077 0.98534 0.96382 0.81835 1.19627 1.00465 0.93106 1.01467 1.20989 0.91643 0.99760 0.91536 1.15924 0.95720 0.95254 0.97729 1.25504 0.92444 0.92756 0.92428 1.81219 1.12031 1.08292 1.11771 1.21414 0.92520 0.95476 0.93893 1.21363 0.97924 0.99350 0.97122 1.18207 0.87160 0.94013 0.89396 1.91556 1.58887 1.95641 1.65672 1.21340 0.95741 0.96773 1.03441 1.21283 0.92770 0.98779 0.99727 0.90289 0.89820 0.91385 0.85256 0.90604 0.75917 0.90894 0.91806 0.83486 0.80175 0.80241 0.84612 0.82232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.03 10.01 71.24 0.71 -1.32 16 2 C -0.11 -3.28 5.88 -19.87 -0.12 -3.40 16 3 C -0.13 -4.81 9.70 22.27 0.22 -4.60 16 4 C -0.12 -5.93 9.35 22.27 0.21 -5.72 16 5 C -0.09 -4.44 4.39 -19.87 -0.09 -4.52 16 6 C -0.03 -1.64 0.70 29.10 0.02 -1.62 16 7 O -0.90 -68.58 16.19 -129.99 -2.10 -70.68 16 8 Si 0.96 47.08 24.30 68.60 1.67 48.75 16 9 H -0.21 -7.53 6.38 99.48 0.63 -6.89 16 10 H -0.31 -16.53 7.11 99.48 0.71 -15.83 16 11 H -0.28 -13.65 7.11 99.48 0.71 -12.95 16 12 C 0.49 27.17 5.95 87.66 0.52 27.70 16 13 O -0.59 -38.37 16.51 15.98 0.26 -38.11 16 14 N -0.72 -29.23 5.09 -466.80 -2.37 -31.60 16 15 C 0.15 5.03 5.47 85.63 0.47 5.50 16 16 C -0.15 -3.20 5.25 -19.86 -0.10 -3.30 16 17 C -0.02 -0.32 9.37 22.53 0.21 -0.11 16 18 C -0.04 -0.58 5.73 -21.33 -0.12 -0.70 16 19 C 0.28 4.95 15.32 88.36 1.35 6.31 16 20 N -0.46 -10.52 18.52 18.98 0.35 -10.17 16 21 C -0.01 -0.11 9.75 22.53 0.22 0.11 16 22 C -0.14 -1.44 10.01 22.27 0.22 -1.22 16 23 C 0.13 2.54 7.25 22.46 0.16 2.71 16 24 F -0.14 -3.45 16.74 44.97 0.75 -2.70 16 25 C -0.16 -5.81 7.63 22.27 0.17 -5.64 16 26 C -0.11 -3.21 9.70 22.27 0.22 -3.00 16 27 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.08 1.33 8.09 -2.39 -0.02 1.31 16 29 H 0.07 1.29 8.09 -2.39 -0.02 1.27 16 30 H 0.13 4.22 8.06 -2.91 -0.02 4.19 16 31 H 0.08 4.47 7.48 -2.91 -0.02 4.45 16 32 H 0.40 14.06 6.68 -92.71 -0.62 13.44 16 33 H 0.07 2.40 7.95 -2.39 -0.02 2.38 16 34 H 0.06 2.22 8.07 -2.39 -0.02 2.20 16 35 H 0.15 2.47 8.00 -2.91 -0.02 2.45 16 36 H 0.18 0.27 8.06 -2.91 -0.02 0.25 16 37 H 0.18 0.82 8.06 -2.91 -0.02 0.80 16 38 H 0.14 4.40 5.26 -2.91 -0.02 4.39 16 39 H 0.16 3.24 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -95.30 349.39 4.01 -91.29 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: 1.18 Total: 6.04 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: 4.27 Total: 7.19 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: -2.02 Total: -41.77 kcal Atomic # 8 Polarization: -106.95 SS G_CDS: -1.84 Total: -108.79 kcal Atomic # 9 Polarization: -3.45 SS G_CDS: 0.75 Total: -2.70 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 1.67 Total: 48.75 kcal Total: -95.30 4.01 -91.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361882314.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.882 kcal (2) G-P(sol) polarization free energy of solvation -95.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds