Wall clock time and date at job start Tue Mar 24 2020 12:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35999 * 117.00225 * 2 1 4 4 C 1.38564 * 120.07228 * 0.02562 * 3 2 1 5 5 C 1.38239 * 120.00130 * 179.97438 * 4 3 2 6 6 C 1.50697 * 119.92835 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47211 * 270.01888 * 6 5 4 8 8 O 1.42910 * 109.46735 * 67.69088 * 7 6 5 9 9 Si 1.86296 * 109.47069 * 307.69788 * 7 6 5 10 10 H 1.48503 * 109.47073 * 355.36832 * 9 7 6 11 11 H 1.48499 * 109.47406 * 115.37272 * 9 7 6 12 12 H 1.48504 * 109.47037 * 235.37038 * 9 7 6 13 13 C 1.50693 * 109.47464 * 187.69322 * 7 6 5 14 14 O 1.21255 * 120.00425 * 229.58136 * 13 7 6 15 15 N 1.34782 * 119.99926 * 49.57552 * 13 7 6 16 16 C 1.46504 * 119.99968 * 175.37204 * 15 13 7 17 17 C 1.52998 * 109.46853 * 90.00208 * 16 15 13 18 18 C 1.53003 * 109.46967 * 179.97438 * 17 16 15 19 19 C 1.52995 * 109.47087 * 180.02562 * 18 17 16 20 20 N 1.46901 * 109.47181 * 179.97438 * 19 18 17 21 21 C 1.38161 * 119.99743 * 355.38087 * 15 13 7 22 22 N 1.30177 * 120.00240 * 39.49986 * 21 15 13 23 23 N 1.37443 * 119.99289 * 219.50306 * 21 15 13 24 24 C 1.38257 * 120.14558 * 0.02562 * 5 4 3 25 25 C 1.38246 * 120.14426 * 0.23453 * 24 5 4 26 26 C 1.38569 * 119.99991 * 359.48975 * 25 24 5 27 27 O 1.35993 * 120.07290 * 180.25012 * 26 25 24 28 28 H 1.09000 * 109.47285 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46665 * 299.99798 * 1 2 3 30 30 H 1.08999 * 109.47468 * 59.99357 * 1 2 3 31 31 H 1.08005 * 119.99913 * 359.97438 * 4 3 2 32 32 H 1.09005 * 109.47260 * 30.01792 * 6 5 4 33 33 H 1.09002 * 109.47322 * 150.01776 * 6 5 4 34 34 H 1.08998 * 109.46891 * 210.00728 * 16 15 13 35 35 H 1.09000 * 109.46824 * 330.00500 * 16 15 13 36 36 H 1.08998 * 109.47288 * 300.00107 * 17 16 15 37 37 H 1.09006 * 109.46719 * 59.99964 * 17 16 15 38 38 H 1.09008 * 109.47152 * 300.00109 * 18 17 16 39 39 H 1.08993 * 109.47367 * 60.00134 * 18 17 16 40 40 H 1.08998 * 109.47445 * 299.99848 * 19 18 17 41 41 H 1.09008 * 109.47409 * 60.00009 * 19 18 17 42 42 H 1.00905 * 111.00144 * 179.97438 * 20 19 18 43 43 H 1.00900 * 110.99825 * 303.94922 * 20 19 18 44 44 H 0.96999 * 120.00715 * 328.80170 * 22 21 15 45 45 H 0.96998 * 120.00853 * 359.97438 * 23 21 15 46 46 H 0.97003 * 119.99686 * 179.97438 * 23 21 15 47 47 H 1.08000 * 119.92450 * 179.97438 * 24 5 4 48 48 H 1.07995 * 119.99697 * 179.74461 * 25 24 5 49 49 H 0.96700 * 114.00204 * 270.27906 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2933 2.3748 0.0005 5 6 1.9225 3.6057 0.0011 6 6 1.1017 4.8696 0.0022 7 6 0.8230 5.2980 -1.4399 8 8 -0.0468 4.3482 -2.0592 9 14 2.4266 5.3797 -2.3844 10 1 3.5592 5.1169 -1.4606 11 1 2.4192 4.3577 -3.4618 12 1 2.5798 6.7297 -2.9839 13 6 0.1683 6.6553 -1.4431 14 8 -0.8414 6.8400 -2.0885 15 7 0.7052 7.6641 -0.7284 16 6 0.1284 9.0083 -0.8111 17 6 -0.9530 9.1660 0.2596 18 6 -1.5549 10.5700 0.1737 19 6 -2.6358 10.7279 1.2448 20 7 -3.2133 12.0761 1.1627 21 6 1.7995 7.4306 0.0820 22 7 2.7505 6.6381 -0.3209 23 7 1.8839 8.0349 1.3135 24 6 3.3030 3.6798 0.0005 25 6 4.0604 2.5233 -0.0054 26 6 3.4360 1.2862 -0.0002 27 8 4.1795 0.1476 -0.0009 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 0.2146 2.3197 0.0005 32 1 0.1577 4.6894 0.5166 33 1 1.6506 5.6588 0.5161 34 1 0.9108 9.7499 -0.6495 35 1 -0.3126 9.1544 -1.7972 36 1 -1.7352 8.4244 0.0979 37 1 -0.5119 9.0198 1.2457 38 1 -0.7723 11.3114 0.3356 39 1 -1.9958 10.7166 -0.8123 40 1 -3.4185 9.9866 1.0833 41 1 -2.1946 10.5815 2.2308 42 1 -3.9308 12.2053 1.8604 43 1 -2.4970 12.7819 1.2453 44 1 2.5451 5.8921 -0.9058 45 1 1.1755 8.6256 1.6136 46 1 2.6520 7.8707 1.8827 47 1 3.7909 4.6434 0.0005 48 1 5.1386 2.5839 -0.0100 49 1 4.3945 -0.1813 -0.8845 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184255492.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 24 2020 12:15:18 Heat of formation + Delta-G solvation = 0.087100 kcal Electronic energy + Delta-G solvation = -33363.306387 eV Core-core repulsion = 28910.862759 eV Total energy + Delta-G solvation = -4452.443628 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 353.183 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.70453 -39.71816 -37.41243 -36.92872 -36.67663 -36.15395 -34.15454 -33.14241 -31.84369 -30.76754 -29.61127 -29.37167 -27.16096 -27.10602 -25.73014 -23.69734 -22.73432 -21.81361 -21.35544 -21.19331 -20.23641 -19.67649 -18.07848 -16.88814 -16.68717 -16.59406 -16.28412 -15.85634 -15.55039 -15.46143 -15.32014 -15.10200 -14.83495 -14.58352 -14.33797 -13.69916 -13.63580 -13.40265 -13.32315 -13.10664 -12.90133 -12.82681 -12.37270 -11.83636 -11.77803 -11.69967 -11.54028 -11.47870 -11.22370 -11.10390 -10.91880 -10.64856 -10.58271 -10.41450 -10.01684 -9.98560 -9.52475 -9.29507 -8.95843 -8.90143 -8.73796 -8.64442 -8.00319 -7.53561 -7.35704 -5.97438 -5.50176 1.87637 2.04111 2.56043 3.14575 3.18205 3.31770 3.45673 3.73452 3.79564 4.16255 4.24735 4.41261 4.44989 4.78359 4.79255 4.91213 5.14707 5.24209 5.39595 5.45061 5.50014 5.51543 5.58422 5.60117 5.67727 5.78582 5.81916 5.94231 5.95927 6.01819 6.08467 6.13717 6.24332 6.32126 6.34423 6.42226 6.60689 6.71188 6.76182 6.85775 6.90568 6.99203 7.04928 7.15386 7.35547 7.50898 7.51222 7.71217 7.74868 7.85335 8.22763 8.82648 9.04437 9.83253 Molecular weight = 353.18amu Principal moments of inertia in cm(-1) A = 0.016227 B = 0.003099 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.101121 B = 9031.637552 C = 9408.623810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.316 6.316 3 C 0.089 3.911 4 C -0.158 4.158 5 C -0.017 4.017 6 C -0.159 4.159 7 C -0.013 4.013 8 O -0.806 6.806 9 Si 0.908 3.092 10 H -0.226 1.226 11 H -0.290 1.290 12 H -0.295 1.295 13 C 0.487 3.513 14 O -0.506 6.506 15 N -0.607 5.607 16 C 0.099 3.901 17 C -0.134 4.134 18 C -0.115 4.115 19 C 0.060 3.940 20 N -0.853 5.853 21 C 0.653 3.347 22 N -0.813 5.813 23 N -0.840 5.840 24 C -0.151 4.151 25 C -0.119 4.119 26 C 0.050 3.950 27 O -0.492 6.492 28 H 0.093 0.907 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.134 0.866 32 H 0.060 0.940 33 H 0.104 0.896 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.026 0.974 42 H 0.340 0.660 43 H 0.338 0.662 44 H 0.356 0.644 45 H 0.398 0.602 46 H 0.415 0.585 47 H 0.153 0.847 48 H 0.128 0.872 49 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.358 7.432 10.391 12.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.230 6.230 3 C 0.044 3.956 4 C -0.176 4.176 5 C -0.018 4.018 6 C -0.197 4.197 7 C -0.117 4.117 8 O -0.748 6.748 9 Si 0.740 3.260 10 H -0.155 1.155 11 H -0.219 1.219 12 H -0.223 1.223 13 C 0.279 3.721 14 O -0.376 6.376 15 N -0.350 5.350 16 C -0.025 4.025 17 C -0.174 4.174 18 C -0.153 4.153 19 C -0.070 4.070 20 N -0.382 5.382 21 C 0.290 3.710 22 N -0.487 5.487 23 N -0.396 5.396 24 C -0.168 4.168 25 C -0.138 4.138 26 C 0.005 3.995 27 O -0.300 6.300 28 H 0.111 0.889 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.151 0.849 32 H 0.079 0.921 33 H 0.121 0.879 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.094 0.906 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.044 0.956 42 H 0.152 0.848 43 H 0.151 0.849 44 H 0.199 0.801 45 H 0.229 0.771 46 H 0.247 0.753 47 H 0.170 0.830 48 H 0.146 0.854 49 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 2.978 6.835 9.297 11.917 hybrid contribution -1.044 0.460 0.337 1.190 sum 1.933 7.294 9.634 12.238 Atomic orbital electron populations 1.23028 0.78897 1.02995 1.02032 1.86032 1.20959 1.26739 1.89240 1.19414 0.91560 0.84745 0.99886 1.21129 1.00451 0.90976 1.05077 1.19601 0.93154 0.94990 0.94007 1.22683 0.99210 0.95964 1.01843 1.24210 1.03794 0.89975 0.93726 1.95089 1.57052 1.48195 1.74464 0.87393 0.80415 0.77589 0.80598 1.15507 1.21887 1.22258 1.25062 0.84402 0.86936 0.75734 1.90457 1.23689 1.82415 1.41054 1.47848 1.32418 1.10606 1.44112 1.21562 0.95894 0.84034 1.00974 1.22012 0.99423 0.97457 0.98502 1.21505 0.97347 0.96308 1.00184 1.21821 0.97387 0.90888 0.96931 1.58696 1.17527 1.04204 1.57811 1.18759 0.79372 0.89256 0.83621 1.69880 1.26040 1.14634 1.38107 1.42314 1.28023 1.55262 1.14005 1.21542 0.93549 0.99198 1.02556 1.21052 0.99835 0.90854 1.02027 1.17626 0.86010 0.86199 1.09617 1.84851 1.72065 1.40337 1.32720 0.88897 0.92982 0.91991 0.84867 0.92147 0.87888 0.90892 0.89313 0.90592 0.92325 0.92124 0.90691 0.90833 0.95621 0.84778 0.84947 0.80076 0.77071 0.75323 0.82971 0.85416 0.76981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.81 101.05 0.99 1.40 16 2 O -0.32 -6.07 10.28 -34.24 -0.35 -6.42 16 3 C 0.09 1.87 6.70 -39.12 -0.26 1.61 16 4 C -0.16 -3.58 8.46 -39.46 -0.33 -3.92 16 5 C -0.02 -0.40 4.12 -104.62 -0.43 -0.83 16 6 C -0.16 -3.82 4.05 -27.88 -0.11 -3.93 16 7 C -0.01 -0.37 0.63 -27.89 -0.02 -0.39 16 8 O -0.81 -27.94 16.84 -54.92 -0.92 -28.86 16 9 Si 0.91 23.97 21.02 -169.99 -3.57 20.40 16 10 H -0.23 -5.14 3.28 56.52 0.19 -4.96 16 11 H -0.29 -8.43 7.11 56.52 0.40 -8.02 16 12 H -0.29 -7.73 7.11 56.52 0.40 -7.33 16 13 C 0.49 12.86 5.88 -10.99 -0.06 12.80 16 14 O -0.51 -14.90 16.16 -14.11 -0.23 -15.12 16 15 N -0.61 -12.24 2.60 -116.81 -0.30 -12.55 16 16 C 0.10 1.55 4.95 -4.04 -0.02 1.53 16 17 C -0.13 -1.72 5.43 -26.73 -0.15 -1.87 16 18 C -0.11 -1.20 5.47 -26.73 -0.15 -1.34 16 19 C 0.06 0.57 6.79 -3.83 -0.03 0.55 16 20 N -0.85 -7.25 9.62 -10.37 -0.10 -7.35 16 21 C 0.65 11.76 5.70 -319.38 -1.82 9.94 16 22 N -0.81 -16.57 8.90 30.25 0.27 -16.30 16 23 N -0.84 -10.05 8.91 30.24 0.27 -9.78 16 24 C -0.15 -3.13 7.02 -39.57 -0.28 -3.41 16 25 C -0.12 -2.25 9.98 -39.46 -0.39 -2.64 16 26 C 0.05 0.99 6.72 -39.12 -0.26 0.72 16 27 O -0.49 -8.41 13.29 -34.22 -0.45 -8.86 16 28 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.05 0.77 7.66 -51.93 -0.40 0.38 16 30 H 0.06 1.06 7.66 -51.93 -0.40 0.66 16 31 H 0.13 3.08 6.30 -52.48 -0.33 2.75 16 32 H 0.06 1.49 8.08 -51.93 -0.42 1.07 16 33 H 0.10 2.20 3.16 -71.96 -0.23 1.97 16 34 H 0.07 0.92 8.04 -51.93 -0.42 0.50 16 35 H 0.09 1.54 7.49 -51.93 -0.39 1.16 16 36 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.06 0.62 5.98 -51.93 -0.31 0.31 16 38 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.03 0.22 8.14 -51.92 -0.42 -0.21 16 42 H 0.34 2.32 9.08 -39.29 -0.36 1.96 16 43 H 0.34 2.35 8.99 -39.29 -0.35 2.00 16 44 H 0.36 8.15 0.00 0.00 0.00 8.15 16 45 H 0.40 3.79 6.17 -40.82 -0.25 3.54 16 46 H 0.41 4.08 8.94 -40.82 -0.37 3.72 16 47 H 0.15 3.06 4.91 -52.49 -0.26 2.80 16 48 H 0.13 2.01 8.06 -52.49 -0.42 1.59 16 49 H 0.38 4.75 9.06 45.56 0.41 5.16 16 LS Contribution 375.27 15.07 5.66 5.66 Total: -1.00 -40.26 375.27 -9.10 -49.35 By element: Atomic # 1 Polarization: 25.66 SS G_CDS: -6.03 Total: 19.62 kcal Atomic # 6 Polarization: 13.53 SS G_CDS: -3.32 Total: 10.21 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: 0.13 Total: -45.97 kcal Atomic # 8 Polarization: -57.31 SS G_CDS: -1.96 Total: -59.27 kcal Atomic # 14 Polarization: 23.97 SS G_CDS: -3.57 Total: 20.40 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -40.26 -9.10 -49.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184255492.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.441 kcal (2) G-P(sol) polarization free energy of solvation -40.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds