Wall clock time and date at job start Tue Mar 24 2020 12:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35999 * 117.00225 * 2 1 4 4 C 1.38564 * 120.07228 * 0.02562 * 3 2 1 5 5 C 1.38239 * 120.00130 * 179.97438 * 4 3 2 6 6 C 1.50697 * 119.92835 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47211 * 270.01888 * 6 5 4 8 8 O 1.42910 * 109.46735 * 67.69088 * 7 6 5 9 9 Si 1.86296 * 109.47069 * 307.69788 * 7 6 5 10 10 H 1.48503 * 109.47073 * 355.36832 * 9 7 6 11 11 H 1.48499 * 109.47406 * 115.37272 * 9 7 6 12 12 H 1.48504 * 109.47037 * 235.37038 * 9 7 6 13 13 C 1.50693 * 109.47464 * 187.69322 * 7 6 5 14 14 O 1.21255 * 120.00425 * 229.58136 * 13 7 6 15 15 N 1.34782 * 119.99926 * 49.57552 * 13 7 6 16 16 C 1.46504 * 119.99968 * 175.37204 * 15 13 7 17 17 C 1.52998 * 109.46853 * 90.00208 * 16 15 13 18 18 C 1.53003 * 109.46967 * 179.97438 * 17 16 15 19 19 C 1.52995 * 109.47087 * 180.02562 * 18 17 16 20 20 N 1.46901 * 109.47181 * 179.97438 * 19 18 17 21 21 C 1.38161 * 119.99743 * 355.38087 * 15 13 7 22 22 N 1.30177 * 120.00240 * 39.49986 * 21 15 13 23 23 N 1.37443 * 119.99289 * 219.50306 * 21 15 13 24 24 C 1.38257 * 120.14558 * 0.02562 * 5 4 3 25 25 C 1.38246 * 120.14426 * 0.23453 * 24 5 4 26 26 C 1.38569 * 119.99991 * 359.48975 * 25 24 5 27 27 O 1.35993 * 120.07290 * 180.25012 * 26 25 24 28 28 H 1.09000 * 109.47285 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46665 * 299.99798 * 1 2 3 30 30 H 1.08999 * 109.47468 * 59.99357 * 1 2 3 31 31 H 1.08005 * 119.99913 * 359.97438 * 4 3 2 32 32 H 1.09005 * 109.47260 * 30.01792 * 6 5 4 33 33 H 1.09002 * 109.47322 * 150.01776 * 6 5 4 34 34 H 1.08998 * 109.46891 * 210.00728 * 16 15 13 35 35 H 1.09000 * 109.46824 * 330.00500 * 16 15 13 36 36 H 1.08998 * 109.47288 * 300.00107 * 17 16 15 37 37 H 1.09006 * 109.46719 * 59.99964 * 17 16 15 38 38 H 1.09008 * 109.47152 * 300.00109 * 18 17 16 39 39 H 1.08993 * 109.47367 * 60.00134 * 18 17 16 40 40 H 1.08998 * 109.47445 * 299.99848 * 19 18 17 41 41 H 1.09008 * 109.47409 * 60.00009 * 19 18 17 42 42 H 1.00905 * 111.00144 * 179.97438 * 20 19 18 43 43 H 1.00900 * 110.99825 * 303.94922 * 20 19 18 44 44 H 0.96999 * 120.00715 * 328.80170 * 22 21 15 45 45 H 0.96998 * 120.00853 * 359.97438 * 23 21 15 46 46 H 0.97003 * 119.99686 * 179.97438 * 23 21 15 47 47 H 1.08000 * 119.92450 * 179.97438 * 24 5 4 48 48 H 1.07995 * 119.99697 * 179.74461 * 25 24 5 49 49 H 0.96700 * 114.00204 * 270.27906 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2933 2.3748 0.0005 5 6 1.9225 3.6057 0.0011 6 6 1.1017 4.8696 0.0022 7 6 0.8230 5.2980 -1.4399 8 8 -0.0468 4.3482 -2.0592 9 14 2.4266 5.3797 -2.3844 10 1 3.5592 5.1169 -1.4606 11 1 2.4192 4.3577 -3.4618 12 1 2.5798 6.7297 -2.9839 13 6 0.1683 6.6553 -1.4431 14 8 -0.8414 6.8400 -2.0885 15 7 0.7052 7.6641 -0.7284 16 6 0.1284 9.0083 -0.8111 17 6 -0.9530 9.1660 0.2596 18 6 -1.5549 10.5700 0.1737 19 6 -2.6358 10.7279 1.2448 20 7 -3.2133 12.0761 1.1627 21 6 1.7995 7.4306 0.0820 22 7 2.7505 6.6381 -0.3209 23 7 1.8839 8.0349 1.3135 24 6 3.3030 3.6798 0.0005 25 6 4.0604 2.5233 -0.0054 26 6 3.4360 1.2862 -0.0002 27 8 4.1795 0.1476 -0.0009 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 0.2146 2.3197 0.0005 32 1 0.1577 4.6894 0.5166 33 1 1.6506 5.6588 0.5161 34 1 0.9108 9.7499 -0.6495 35 1 -0.3126 9.1544 -1.7972 36 1 -1.7352 8.4244 0.0979 37 1 -0.5119 9.0198 1.2457 38 1 -0.7723 11.3114 0.3356 39 1 -1.9958 10.7166 -0.8123 40 1 -3.4185 9.9866 1.0833 41 1 -2.1946 10.5815 2.2308 42 1 -3.9308 12.2053 1.8604 43 1 -2.4970 12.7819 1.2453 44 1 2.5451 5.8921 -0.9058 45 1 1.1755 8.6256 1.6136 46 1 2.6520 7.8707 1.8827 47 1 3.7909 4.6434 0.0005 48 1 5.1386 2.5839 -0.0100 49 1 4.3945 -0.1813 -0.8845 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184255492.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 24 2020 12:15:18 Heat of formation + Delta-G solvation = -35.972411 kcal Electronic energy + Delta-G solvation = -33364.870045 eV Core-core repulsion = 28910.862759 eV Total energy + Delta-G solvation = -4454.007285 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 353.183 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.43229 -41.27372 -39.01139 -38.61657 -38.12740 -37.25057 -35.53752 -34.66047 -33.21611 -32.31463 -31.39864 -30.98170 -28.78552 -28.37484 -27.35701 -25.39413 -23.93799 -23.32921 -22.97055 -22.17031 -21.95697 -21.30645 -19.53804 -18.40071 -18.26970 -18.10183 -17.58348 -17.31806 -16.88037 -16.85638 -16.64245 -16.52441 -16.10716 -16.03797 -15.53317 -15.36005 -15.14039 -15.00966 -14.87416 -14.75435 -14.55145 -14.30495 -13.68411 -13.52456 -13.43081 -13.06532 -12.86674 -12.75614 -12.62522 -12.53603 -12.34162 -12.20842 -12.12490 -11.83939 -11.62504 -11.53367 -11.43818 -11.11660 -10.95433 -10.47420 -10.22092 -9.64964 -9.60280 -9.14208 -9.00919 -8.33578 -7.86684 0.27211 0.41188 0.83474 1.13471 1.21640 1.32638 1.59052 1.87031 2.30454 2.35914 2.68206 2.91978 3.32230 3.55381 3.72485 3.85825 3.91479 3.96871 4.11189 4.19321 4.23292 4.27455 4.31218 4.40370 4.44597 4.48702 4.50563 4.53603 4.61621 4.63213 4.71557 4.72422 4.78911 4.84290 4.93839 4.98477 5.14557 5.26278 5.31052 5.32123 5.35483 5.39148 5.74525 5.83369 5.98275 6.23798 6.24438 6.31424 6.41177 6.62664 6.90713 7.01929 7.41076 7.67610 Molecular weight = 353.18amu Principal moments of inertia in cm(-1) A = 0.016227 B = 0.003099 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.101121 B = 9031.637552 C = 9408.623810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.320 6.320 3 C 0.079 3.921 4 C -0.180 4.180 5 C -0.045 4.045 6 C -0.142 4.142 7 C -0.057 4.057 8 O -0.886 6.886 9 Si 0.931 3.069 10 H -0.158 1.158 11 H -0.340 1.340 12 H -0.298 1.298 13 C 0.483 3.517 14 O -0.555 6.555 15 N -0.604 5.604 16 C 0.092 3.908 17 C -0.124 4.124 18 C -0.106 4.106 19 C 0.062 3.938 20 N -0.863 5.863 21 C 0.652 3.348 22 N -0.828 5.828 23 N -0.801 5.801 24 C -0.154 4.154 25 C -0.107 4.107 26 C 0.058 3.942 27 O -0.490 6.490 28 H 0.134 0.866 29 H 0.056 0.944 30 H 0.038 0.962 31 H 0.111 0.889 32 H 0.034 0.966 33 H 0.135 0.865 34 H 0.118 0.882 35 H 0.063 0.937 36 H 0.035 0.965 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.045 0.955 42 H 0.350 0.650 43 H 0.350 0.650 44 H 0.339 0.661 45 H 0.416 0.584 46 H 0.433 0.567 47 H 0.165 0.835 48 H 0.171 0.829 49 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.709 9.034 13.442 17.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.234 6.234 3 C 0.033 3.967 4 C -0.199 4.199 5 C -0.046 4.046 6 C -0.180 4.180 7 C -0.157 4.157 8 O -0.831 6.831 9 Si 0.764 3.236 10 H -0.084 1.084 11 H -0.273 1.273 12 H -0.226 1.226 13 C 0.274 3.726 14 O -0.430 6.430 15 N -0.345 5.345 16 C -0.030 4.030 17 C -0.164 4.164 18 C -0.145 4.145 19 C -0.068 4.068 20 N -0.394 5.394 21 C 0.289 3.711 22 N -0.501 5.501 23 N -0.360 5.360 24 C -0.172 4.172 25 C -0.125 4.125 26 C 0.012 3.988 27 O -0.301 6.301 28 H 0.152 0.848 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.129 0.871 32 H 0.053 0.947 33 H 0.152 0.848 34 H 0.136 0.864 35 H 0.082 0.918 36 H 0.054 0.946 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.163 0.837 43 H 0.163 0.837 44 H 0.179 0.821 45 H 0.250 0.750 46 H 0.268 0.732 47 H 0.182 0.818 48 H 0.188 0.812 49 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 6.376 8.537 12.474 16.405 hybrid contribution -2.145 -0.036 -0.548 2.214 sum 4.230 8.501 11.926 15.244 Atomic orbital electron populations 1.23234 0.77438 1.05341 1.01143 1.86015 1.22436 1.25937 1.89025 1.19641 0.92573 0.84603 0.99858 1.21078 0.99788 0.92219 1.06860 1.19669 0.94470 0.94345 0.96085 1.22482 0.98748 0.97803 0.98957 1.24912 1.04636 0.89925 0.96265 1.95001 1.59926 1.51408 1.76779 0.87108 0.81495 0.75788 0.79169 1.08440 1.27291 1.22635 1.24472 0.83885 0.88093 0.76102 1.90415 1.25689 1.83482 1.43394 1.47500 1.32488 1.11153 1.43309 1.21933 0.97945 0.82145 1.00997 1.21902 0.97569 0.98065 0.98848 1.21419 0.98336 0.95159 0.99548 1.21718 0.96601 0.91101 0.97424 1.58626 1.18272 1.03932 1.58587 1.19064 0.78215 0.89204 0.84654 1.69856 1.26822 1.15158 1.38243 1.42146 1.28944 1.53784 1.11084 1.21609 0.92317 1.00483 1.02809 1.21458 1.01769 0.89578 0.99653 1.17763 0.85520 0.87424 1.08058 1.84787 1.71233 1.39349 1.34753 0.84800 0.92519 0.94368 0.87092 0.94711 0.84844 0.86363 0.91802 0.94581 0.89235 0.89085 0.92807 0.92872 0.93633 0.83667 0.83691 0.82137 0.75040 0.73153 0.81819 0.81155 0.74251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.74 9.81 113.37 1.11 1.86 16 2 O -0.32 -12.23 10.28 -79.68 -0.82 -13.05 16 3 C 0.08 3.30 6.70 22.57 0.15 3.45 16 4 C -0.18 -8.54 8.46 22.35 0.19 -8.35 16 5 C -0.05 -2.12 4.12 -19.86 -0.08 -2.20 16 6 C -0.14 -7.02 4.05 29.85 0.12 -6.90 16 7 C -0.06 -3.34 0.63 29.85 0.02 -3.32 16 8 O -0.89 -66.20 16.84 -130.15 -2.19 -68.39 16 9 Si 0.93 49.93 21.02 68.60 1.44 51.37 16 10 H -0.16 -6.81 3.28 99.48 0.33 -6.49 16 11 H -0.34 -20.90 7.11 99.48 0.71 -20.20 16 12 H -0.30 -15.75 7.11 99.48 0.71 -15.04 16 13 C 0.48 26.65 5.88 87.65 0.52 27.16 16 14 O -0.56 -35.01 16.16 15.87 0.26 -34.75 16 15 N -0.60 -24.08 2.60 -641.87 -1.67 -25.75 16 16 C 0.09 2.77 4.95 86.38 0.43 3.19 16 17 C -0.12 -3.03 5.43 30.59 0.17 -2.86 16 18 C -0.11 -2.00 5.47 30.59 0.17 -1.84 16 19 C 0.06 1.07 6.79 86.30 0.59 1.66 16 20 N -0.86 -12.90 9.62 -186.72 -1.80 -14.69 16 21 C 0.65 21.77 5.70 260.29 1.48 23.26 16 22 N -0.83 -31.55 8.90 -58.21 -0.52 -32.07 16 23 N -0.80 -15.47 8.91 -58.25 -0.52 -15.99 16 24 C -0.15 -6.08 7.02 22.28 0.16 -5.92 16 25 C -0.11 -3.64 9.98 22.35 0.22 -3.42 16 26 C 0.06 2.12 6.72 22.57 0.15 2.27 16 27 O -0.49 -15.06 13.29 -79.61 -1.06 -16.12 16 28 H 0.13 3.14 8.14 -2.39 -0.02 3.12 16 29 H 0.06 1.75 7.66 -2.39 -0.02 1.74 16 30 H 0.04 1.40 7.66 -2.39 -0.02 1.38 16 31 H 0.11 5.59 6.30 -2.91 -0.02 5.57 16 32 H 0.03 1.81 8.08 -2.38 -0.02 1.79 16 33 H 0.13 5.57 3.16 -41.94 -0.13 5.44 16 34 H 0.12 2.51 8.04 -2.39 -0.02 2.49 16 35 H 0.06 2.27 7.49 -2.39 -0.02 2.26 16 36 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.09 1.57 5.98 -2.38 -0.01 1.56 16 38 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 39 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 42 H 0.35 4.11 9.08 -89.69 -0.81 3.30 16 43 H 0.35 3.86 8.99 -89.69 -0.81 3.06 16 44 H 0.34 15.08 0.00 0.00 0.00 15.08 16 45 H 0.42 5.70 6.17 -92.71 -0.57 5.13 16 46 H 0.43 6.14 8.94 -92.71 -0.83 5.31 16 47 H 0.16 5.96 4.91 -2.91 -0.01 5.94 16 48 H 0.17 4.36 8.06 -2.91 -0.02 4.34 16 49 H 0.40 8.63 9.06 -74.06 -0.67 7.96 16 Total: -1.00 -98.51 375.27 -3.85 -102.36 By element: Atomic # 1 Polarization: 41.39 SS G_CDS: -2.36 Total: 39.03 kcal Atomic # 6 Polarization: 22.66 SS G_CDS: 5.39 Total: 28.05 kcal Atomic # 7 Polarization: -83.99 SS G_CDS: -4.50 Total: -88.50 kcal Atomic # 8 Polarization: -128.49 SS G_CDS: -3.81 Total: -132.31 kcal Atomic # 14 Polarization: 49.93 SS G_CDS: 1.44 Total: 51.37 kcal Total: -98.51 -3.85 -102.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184255492.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.388 kcal (2) G-P(sol) polarization free energy of solvation -98.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds