Wall clock time and date at job start Tue Mar 24 2020 12:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46970 * 2 1 4 4 O 1.42901 * 109.47376 * 65.00123 * 3 2 1 5 5 Si 1.86302 * 109.47300 * 304.99891 * 3 2 1 6 6 H 1.48503 * 109.46808 * 60.00086 * 5 3 2 7 7 H 1.48499 * 109.47201 * 180.02562 * 5 3 2 8 8 H 1.48497 * 109.46956 * 300.00310 * 5 3 2 9 9 C 1.50698 * 109.46855 * 185.00182 * 3 2 1 10 10 O 1.21283 * 119.99698 * 239.99982 * 9 3 2 11 11 N 1.34776 * 120.00418 * 60.00045 * 9 3 2 12 12 C 1.46501 * 120.00503 * 180.02562 * 11 9 3 13 13 C 1.52998 * 109.47171 * 179.97438 * 12 11 9 14 14 O 1.42902 * 109.47023 * 65.00068 * 13 12 11 15 Xx 1.42003 * 113.99877 * 186.05766 * 14 13 12 16 15 C 1.57005 * 120.00021 * 174.22539 * 15 14 13 17 16 C 1.39373 * 120.11873 * 171.88637 * 16 15 14 18 17 C 1.37972 * 119.87860 * 179.72134 * 17 16 15 19 18 C 1.38374 * 120.12012 * 0.55389 * 18 17 16 20 19 C 1.38382 * 120.23723 * 359.71914 * 19 18 17 21 20 C 1.37975 * 120.11997 * 0.02562 * 20 19 18 22 21 C 1.56996 * 119.99899 * 354.22480 * 15 14 13 23 22 C 1.39371 * 120.12085 * 309.60283 * 22 15 14 24 23 C 1.37974 * 119.87963 * 179.72548 * 23 22 15 25 24 C 1.38374 * 120.11918 * 0.54591 * 24 23 22 26 25 C 1.38378 * 120.23767 * 359.72824 * 25 24 23 27 26 C 1.37968 * 120.12035 * 359.97438 * 26 25 24 28 27 H 1.08997 * 109.47049 * 180.02562 * 1 2 3 29 28 H 1.09002 * 109.47060 * 299.99992 * 1 2 3 30 29 H 1.08998 * 109.47139 * 59.99740 * 1 2 3 31 30 H 1.08998 * 109.47139 * 120.00260 * 2 1 3 32 31 H 1.09001 * 109.46540 * 239.99956 * 2 1 3 33 32 H 0.97005 * 119.99546 * 359.97438 * 11 9 3 34 33 H 1.09005 * 109.46472 * 299.99672 * 12 11 9 35 34 H 1.08994 * 109.47300 * 59.99499 * 12 11 9 36 35 H 1.09001 * 109.46965 * 184.99315 * 13 12 11 37 36 H 1.08993 * 109.47174 * 304.99909 * 13 12 11 38 37 H 1.07998 * 120.05853 * 359.97301 * 17 16 15 39 38 H 1.07998 * 119.94242 * 180.25081 * 18 17 16 40 39 H 1.07996 * 119.88277 * 179.69851 * 19 18 17 41 40 H 1.08001 * 119.93950 * 179.97438 * 20 19 18 42 41 H 1.07999 * 120.06047 * 179.97438 * 21 20 19 43 42 H 1.07998 * 120.05750 * 359.97438 * 23 22 15 44 43 H 1.07998 * 119.94219 * 180.25411 * 24 23 22 45 44 H 1.07996 * 119.88083 * 179.70293 * 25 24 23 46 45 H 1.08003 * 119.93725 * 179.97438 * 26 25 24 47 46 H 1.07995 * 120.06179 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.6620 2.0814 1.2210 5 14 1.2972 2.3638 -1.4388 6 1 -0.1828 2.3620 -1.3168 7 1 1.7926 3.7637 -1.4392 8 1 1.6900 1.6999 -2.7077 9 6 3.5419 1.4443 -0.1239 10 8 4.2216 1.9435 0.7477 11 7 4.1298 0.8911 -1.2032 12 6 5.5898 0.8923 -1.3233 13 6 5.9945 0.2079 -2.6305 14 8 5.5235 0.9789 -3.7376 15 6 5.1440 1.0205 -6.2999 16 6 5.4828 0.5142 -7.5534 17 6 4.9621 1.0934 -8.6923 18 6 4.1141 2.1823 -8.5920 19 6 3.7789 2.6925 -7.3501 20 6 4.2898 2.1176 -6.2046 21 6 6.5384 -0.9797 -5.0958 22 6 7.7866 -1.0878 -4.4853 23 6 8.4919 -2.2708 -4.5678 24 6 7.9672 -3.3449 -5.2647 25 6 6.7309 -3.2410 -5.8776 26 6 6.0144 -2.0648 -5.7961 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8934 -0.5139 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 3.5861 0.4915 -1.9001 33 1 5.9535 1.9200 -1.3231 34 1 6.0241 0.3531 -0.4816 35 1 7.0807 0.1294 -2.6784 36 1 5.5561 -0.7893 -2.6693 37 1 6.1484 -0.3325 -7.6330 38 1 5.2207 0.6994 -9.6640 39 1 3.7126 2.6357 -9.4861 40 1 3.1169 3.5428 -7.2774 41 1 4.0279 2.5169 -5.2358 42 1 8.1992 -0.2485 -3.9452 43 1 9.4574 -2.3571 -4.0916 44 1 8.5247 -4.2675 -5.3309 45 1 6.3261 -4.0823 -6.4206 46 1 5.0498 -1.9846 -6.2751 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE ALL CONVERGERS ARE NOW FORCED ON SHIFT=1000, PULAY ON, CAMP-KING ON AND ITERATION COUNTER RESET CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143971962.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 24 2020 12:14:04 Heat of formation + Delta-G solvation = 126.746874 kcal Electronic energy + Delta-G solvation = -27248.666382 eV Core-core repulsion = 23384.953756 eV Total energy + Delta-G solvation = -3863.712627 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 52.38 seconds Orbital eigenvalues (eV) -38.72092 -38.63281 -38.42896 -34.70007 -34.26359 -31.85413 -31.01066 -30.73888 -30.11391 -30.02754 -29.64505 -27.58043 -24.84079 -22.51217 -22.11726 -21.71002 -21.46744 -21.37330 -20.54395 -18.88437 -16.90471 -16.48447 -16.06154 -15.31212 -14.78954 -14.70276 -14.61027 -14.57382 -14.44616 -14.29844 -13.55054 -13.51882 -13.32715 -13.30720 -12.92423 -12.71635 -12.59260 -12.53729 -12.32602 -11.97357 -11.78379 -11.54248 -11.39404 -11.32815 -11.02393 -10.97165 -10.90467 -10.80022 -10.25881 -10.24709 -9.77520 -8.98110 -8.95758 -8.89260 -8.66254 -8.62895 -8.10178 -7.62266 -7.44468 -7.25316 -5.60484 -4.32092 -0.60006 1.37017 1.44739 1.52064 1.58671 2.86959 3.04724 3.12295 3.52921 3.89324 3.96750 4.02077 4.31227 4.94273 4.97198 4.99198 5.04863 5.12382 5.19879 5.47702 5.52739 5.54628 5.61799 5.71290 5.75122 5.81601 5.84029 5.86118 5.98706 6.04640 6.10552 6.14285 6.26047 6.35604 6.38632 6.44156 6.45308 6.49456 6.54417 6.56973 6.61572 6.81987 6.83859 6.88134 6.90345 6.91429 6.93019 6.98156 7.42425 8.20811 8.26712 8.67330 9.34529 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.009521 B = 0.003773 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2940.039182 B = 7420.111470 C = 9123.400018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.130 4.130 3 C -0.048 4.048 4 O -0.638 6.638 5 Si 0.972 3.028 6 H -0.259 1.259 7 H -0.268 1.268 8 H -0.258 1.258 9 C 0.493 3.507 10 O -0.532 6.532 11 N -0.719 5.719 12 C 0.112 3.888 13 C 0.085 3.915 14 O -0.598 6.598 15 C 0.065 3.935 16 C -0.153 4.153 17 C -0.114 4.114 18 C -0.151 4.151 19 C -0.108 4.108 20 C -0.112 4.112 21 C 0.050 3.950 22 C -0.134 4.134 23 C -0.104 4.104 24 C -0.153 4.153 25 C -0.108 4.108 26 C -0.148 4.148 27 H 0.047 0.953 28 H 0.066 0.934 29 H 0.048 0.952 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.400 0.600 33 H 0.056 0.944 34 H 0.051 0.949 35 H 0.030 0.970 36 H 0.009 0.991 37 H 0.128 0.872 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.129 0.871 41 H 0.142 0.858 42 H 0.138 0.862 43 H 0.127 0.873 44 H 0.121 0.879 45 H 0.125 0.875 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.548 -8.337 -16.882 19.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.168 4.168 3 C -0.147 4.147 4 O -0.582 6.582 5 Si 0.789 3.211 6 H -0.184 1.184 7 H -0.192 1.192 8 H -0.185 1.185 9 C 0.280 3.720 10 O -0.408 6.408 11 N -0.377 5.377 12 C -0.012 4.012 13 C -0.001 4.001 14 O -0.545 6.545 15 C 0.065 3.935 16 C -0.171 4.171 17 C -0.132 4.132 18 C -0.169 4.169 19 C -0.125 4.125 20 C -0.130 4.130 21 C 0.048 3.952 22 C -0.152 4.152 23 C -0.122 4.122 24 C -0.171 4.171 25 C -0.126 4.126 26 C -0.166 4.166 27 H 0.067 0.933 28 H 0.085 0.915 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.235 0.765 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.047 0.953 36 H 0.027 0.973 37 H 0.146 0.854 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.147 0.853 41 H 0.160 0.840 42 H 0.155 0.845 43 H 0.145 0.855 44 H 0.139 0.861 45 H 0.143 0.857 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.543 -7.299 -16.852 18.918 hybrid contribution 0.110 -0.539 0.447 0.709 sum 4.653 -7.838 -16.405 18.767 Atomic orbital electron populations 1.21783 0.96041 1.00564 1.02371 1.21906 0.96350 0.97461 1.01121 1.24959 0.89287 0.96241 1.04167 1.94970 1.72777 1.69376 1.21044 0.86150 0.79957 0.81216 0.73748 1.18378 1.19228 1.18455 1.22942 0.91359 0.76842 0.80838 1.90523 1.64197 1.45594 1.40533 1.46398 1.07207 1.61115 1.22934 1.22457 0.80645 1.01115 0.97026 1.21881 0.95134 0.94046 0.89000 1.94947 1.78426 1.54288 1.26803 1.33082 0.89193 0.89794 0.81445 1.21885 1.02697 1.02406 0.90135 1.21206 0.98062 0.96669 0.97260 1.21151 1.00237 0.97888 0.97611 1.21236 1.00095 0.99910 0.91303 1.21372 0.96953 0.95249 0.99440 1.33088 0.87775 0.84504 0.89790 1.21364 0.93700 0.98237 1.01914 1.21160 0.99681 0.92056 0.99322 1.21135 0.96701 0.99060 1.00221 1.21175 0.94839 0.96560 0.99980 1.21537 1.01868 0.91636 1.01567 0.93349 0.91454 0.93276 0.91524 0.92872 0.76541 0.92583 0.93069 0.95302 0.97340 0.85405 0.85873 0.86074 0.85302 0.84034 0.84463 0.85502 0.86076 0.85716 0.85290 Number of geometries 1 Number of calculations of the screened coulomb radii 20 The total number of SCF iterations 1072. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.20 37.16 0.34 -2.43 16 2 C -0.13 -2.71 4.82 -26.73 -0.13 -2.84 16 3 C -0.05 -1.21 0.64 -27.88 -0.02 -1.23 16 4 O -0.64 -19.49 16.74 -55.14 -0.92 -20.41 16 5 Si 0.97 21.14 24.06 -169.99 -4.09 17.05 16 6 H -0.26 -5.23 6.38 56.52 0.36 -4.87 16 7 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 8 H -0.26 -5.00 7.10 56.52 0.40 -4.60 16 9 C 0.49 12.78 6.01 -10.99 -0.07 12.72 16 10 O -0.53 -15.89 16.50 -14.36 -0.24 -16.13 16 11 N -0.72 -16.14 4.99 -60.30 -0.30 -16.44 16 12 C 0.11 2.38 6.06 -4.04 -0.02 2.35 16 13 C 0.08 1.67 5.04 37.16 0.19 1.86 16 14 O -0.60 -13.05 13.31 -35.23 -0.47 -13.52 16 15 C 0.07 1.07 9.45 -38.74 -0.37 0.71 16 16 C -0.15 -2.06 9.15 -39.26 -0.36 -2.42 16 17 C -0.11 -1.32 10.03 -39.63 -0.40 -1.71 16 18 C -0.15 -1.73 10.04 -39.48 -0.40 -2.12 16 19 C -0.11 -1.39 10.03 -39.62 -0.40 -1.79 16 20 C -0.11 -1.80 9.76 -39.26 -0.38 -2.18 16 21 C 0.05 0.78 7.20 -38.74 -0.28 0.50 16 22 C -0.13 -1.91 8.40 -39.26 -0.33 -2.24 16 23 C -0.10 -1.22 10.03 -39.63 -0.40 -1.61 16 24 C -0.15 -1.65 10.04 -39.48 -0.40 -2.04 16 25 C -0.11 -1.19 10.03 -39.63 -0.40 -1.59 16 26 C -0.15 -1.95 8.42 -39.26 -0.33 -2.28 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.07 1.35 7.82 -51.93 -0.41 0.94 16 29 H 0.05 0.85 5.34 -51.93 -0.28 0.58 16 30 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 31 H 0.05 0.95 7.35 -51.93 -0.38 0.57 16 32 H 0.40 8.30 7.07 -40.82 -0.29 8.01 16 33 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.03 0.54 5.36 -51.93 -0.28 0.26 16 36 H 0.01 0.18 7.75 -51.93 -0.40 -0.23 16 37 H 0.13 1.57 6.42 -52.49 -0.34 1.23 16 38 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 39 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 40 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 41 H 0.14 2.49 7.80 -52.49 -0.41 2.08 16 42 H 0.14 1.98 6.46 -52.49 -0.34 1.64 16 43 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 44 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 45 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 46 H 0.13 1.59 7.91 -52.49 -0.42 1.18 16 LS Contribution 390.74 15.07 5.89 5.89 Total: -1.00 -33.09 390.74 -10.87 -43.95 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -6.60 Total: 7.96 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -4.14 Total: -8.35 kcal Atomic # 7 Polarization: -16.14 SS G_CDS: -0.30 Total: -16.44 kcal Atomic # 8 Polarization: -48.44 SS G_CDS: -1.63 Total: -50.07 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.09 Total: 17.05 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.09 -10.87 -43.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143971962.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.702 kcal (2) G-P(sol) polarization free energy of solvation -33.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 52.38 seconds