Wall clock time and date at job start Tue Mar 24 2020 12:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46970 * 2 1 4 4 O 1.42901 * 109.47376 * 65.00123 * 3 2 1 5 5 Si 1.86302 * 109.47300 * 304.99891 * 3 2 1 6 6 H 1.48503 * 109.46808 * 60.00086 * 5 3 2 7 7 H 1.48499 * 109.47201 * 180.02562 * 5 3 2 8 8 H 1.48497 * 109.46956 * 300.00310 * 5 3 2 9 9 C 1.50698 * 109.46855 * 185.00182 * 3 2 1 10 10 O 1.21283 * 119.99698 * 239.99982 * 9 3 2 11 11 N 1.34776 * 120.00418 * 60.00045 * 9 3 2 12 12 C 1.46501 * 120.00503 * 180.02562 * 11 9 3 13 13 C 1.52998 * 109.47171 * 179.97438 * 12 11 9 14 14 O 1.42902 * 109.47023 * 65.00068 * 13 12 11 15 Xx 1.42003 * 113.99877 * 186.05766 * 14 13 12 16 15 C 1.57005 * 120.00021 * 174.22539 * 15 14 13 17 16 C 1.39373 * 120.11873 * 171.88637 * 16 15 14 18 17 C 1.37972 * 119.87860 * 179.72134 * 17 16 15 19 18 C 1.38374 * 120.12012 * 0.55389 * 18 17 16 20 19 C 1.38382 * 120.23723 * 359.71914 * 19 18 17 21 20 C 1.37975 * 120.11997 * 0.02562 * 20 19 18 22 21 C 1.56996 * 119.99899 * 354.22480 * 15 14 13 23 22 C 1.39371 * 120.12085 * 309.60283 * 22 15 14 24 23 C 1.37974 * 119.87963 * 179.72548 * 23 22 15 25 24 C 1.38374 * 120.11918 * 0.54591 * 24 23 22 26 25 C 1.38378 * 120.23767 * 359.72824 * 25 24 23 27 26 C 1.37968 * 120.12035 * 359.97438 * 26 25 24 28 27 H 1.08997 * 109.47049 * 180.02562 * 1 2 3 29 28 H 1.09002 * 109.47060 * 299.99992 * 1 2 3 30 29 H 1.08998 * 109.47139 * 59.99740 * 1 2 3 31 30 H 1.08998 * 109.47139 * 120.00260 * 2 1 3 32 31 H 1.09001 * 109.46540 * 239.99956 * 2 1 3 33 32 H 0.97005 * 119.99546 * 359.97438 * 11 9 3 34 33 H 1.09005 * 109.46472 * 299.99672 * 12 11 9 35 34 H 1.08994 * 109.47300 * 59.99499 * 12 11 9 36 35 H 1.09001 * 109.46965 * 184.99315 * 13 12 11 37 36 H 1.08993 * 109.47174 * 304.99909 * 13 12 11 38 37 H 1.07998 * 120.05853 * 359.97301 * 17 16 15 39 38 H 1.07998 * 119.94242 * 180.25081 * 18 17 16 40 39 H 1.07996 * 119.88277 * 179.69851 * 19 18 17 41 40 H 1.08001 * 119.93950 * 179.97438 * 20 19 18 42 41 H 1.07999 * 120.06047 * 179.97438 * 21 20 19 43 42 H 1.07998 * 120.05750 * 359.97438 * 23 22 15 44 43 H 1.07998 * 119.94219 * 180.25411 * 24 23 22 45 44 H 1.07996 * 119.88083 * 179.70293 * 25 24 23 46 45 H 1.08003 * 119.93725 * 179.97438 * 26 25 24 47 46 H 1.07995 * 120.06179 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.6620 2.0814 1.2210 5 14 1.2972 2.3638 -1.4388 6 1 -0.1828 2.3620 -1.3168 7 1 1.7926 3.7637 -1.4392 8 1 1.6900 1.6999 -2.7077 9 6 3.5419 1.4443 -0.1239 10 8 4.2216 1.9435 0.7477 11 7 4.1298 0.8911 -1.2032 12 6 5.5898 0.8923 -1.3233 13 6 5.9945 0.2079 -2.6305 14 8 5.5235 0.9789 -3.7376 15 6 5.1440 1.0205 -6.2999 16 6 5.4828 0.5142 -7.5534 17 6 4.9621 1.0934 -8.6923 18 6 4.1141 2.1823 -8.5920 19 6 3.7789 2.6925 -7.3501 20 6 4.2898 2.1176 -6.2046 21 6 6.5384 -0.9797 -5.0958 22 6 7.7866 -1.0878 -4.4853 23 6 8.4919 -2.2708 -4.5678 24 6 7.9672 -3.3449 -5.2647 25 6 6.7309 -3.2410 -5.8776 26 6 6.0144 -2.0648 -5.7961 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8934 -0.5139 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 3.5861 0.4915 -1.9001 33 1 5.9535 1.9200 -1.3231 34 1 6.0241 0.3531 -0.4816 35 1 7.0807 0.1294 -2.6784 36 1 5.5561 -0.7893 -2.6693 37 1 6.1484 -0.3325 -7.6330 38 1 5.2207 0.6994 -9.6640 39 1 3.7126 2.6357 -9.4861 40 1 3.1169 3.5428 -7.2774 41 1 4.0279 2.5169 -5.2358 42 1 8.1992 -0.2485 -3.9452 43 1 9.4574 -2.3571 -4.0916 44 1 8.5247 -4.2675 -5.3309 45 1 6.3261 -4.0823 -6.4206 46 1 5.0498 -1.9846 -6.2751 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143971962.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 24 2020 12:14:03 Heat of formation + Delta-G solvation = 88.411284 kcal Electronic energy + Delta-G solvation = -27250.328738 eV Core-core repulsion = 23384.953756 eV Total energy + Delta-G solvation = -3865.374982 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.31308 -40.00712 -39.75703 -36.37632 -35.62333 -33.54933 -32.29421 -32.01218 -31.45262 -31.09755 -30.98966 -29.25553 -26.24961 -23.78821 -23.44619 -22.96245 -22.88351 -22.72519 -22.21637 -20.47038 -18.07213 -17.71911 -17.49786 -16.93683 -16.36109 -15.92822 -15.92159 -15.85212 -15.74764 -15.70857 -15.11050 -14.95428 -14.77748 -14.59004 -14.54485 -14.08789 -13.89552 -13.84802 -13.61641 -13.28450 -13.18578 -12.97266 -12.87375 -12.80823 -12.66466 -12.31031 -12.20323 -12.13431 -11.91321 -11.59725 -11.18223 -10.61854 -10.18369 -10.14477 -10.04895 -9.99561 -9.86646 -9.42372 -9.07170 -8.23934 -7.73263 -5.48806 -2.10230 0.15450 0.16160 0.19233 0.20986 1.22756 1.34447 1.45021 1.97000 2.52766 2.62189 2.62542 2.74584 3.78871 3.80854 3.82766 3.85604 4.11838 4.13175 4.24696 4.25422 4.26483 4.28149 4.29079 4.32462 4.39912 4.47882 4.51751 4.56711 4.58393 4.61805 4.82267 4.91113 4.93536 4.95495 5.04829 5.18540 5.20125 5.24491 5.27424 5.34784 5.35845 5.39866 5.44040 5.50422 5.57297 5.69367 5.70454 5.77047 6.50020 6.80168 7.51204 7.97315 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.009521 B = 0.003773 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2940.039182 B = 7420.111470 C = 9123.400018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.123 4.123 3 C -0.057 4.057 4 O -0.912 6.912 5 Si 0.962 3.038 6 H -0.252 1.252 7 H -0.322 1.322 8 H -0.238 1.238 9 C 0.470 3.530 10 O -0.609 6.609 11 N -0.717 5.717 12 C 0.103 3.897 13 C 0.101 3.899 14 O -0.651 6.651 15 C 0.078 3.922 16 C -0.135 4.135 17 C -0.086 4.086 18 C -0.124 4.124 19 C -0.097 4.097 20 C -0.139 4.139 21 C 0.072 3.928 22 C -0.145 4.145 23 C -0.089 4.089 24 C -0.124 4.124 25 C -0.083 4.083 26 C -0.139 4.139 27 H 0.083 0.917 28 H 0.031 0.969 29 H 0.055 0.945 30 H 0.028 0.972 31 H 0.070 0.930 32 H 0.403 0.597 33 H 0.024 0.976 34 H 0.045 0.955 35 H 0.041 0.959 36 H 0.015 0.985 37 H 0.161 0.839 38 H 0.185 0.815 39 H 0.172 0.828 40 H 0.157 0.843 41 H 0.117 0.883 42 H 0.137 0.863 43 H 0.165 0.835 44 H 0.171 0.829 45 H 0.179 0.821 46 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.219 -16.145 -34.661 40.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.161 4.161 3 C -0.157 4.157 4 O -0.859 6.859 5 Si 0.788 3.212 6 H -0.176 1.176 7 H -0.251 1.251 8 H -0.163 1.163 9 C 0.261 3.739 10 O -0.491 6.491 11 N -0.373 5.373 12 C -0.021 4.021 13 C 0.017 3.983 14 O -0.598 6.598 15 C 0.077 3.923 16 C -0.152 4.152 17 C -0.103 4.103 18 C -0.141 4.141 19 C -0.114 4.114 20 C -0.157 4.157 21 C 0.068 3.932 22 C -0.163 4.163 23 C -0.106 4.106 24 C -0.142 4.142 25 C -0.101 4.101 26 C -0.156 4.156 27 H 0.102 0.898 28 H 0.051 0.949 29 H 0.074 0.926 30 H 0.047 0.953 31 H 0.089 0.911 32 H 0.239 0.761 33 H 0.042 0.958 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.033 0.967 37 H 0.178 0.822 38 H 0.202 0.798 39 H 0.190 0.810 40 H 0.174 0.826 41 H 0.135 0.865 42 H 0.154 0.846 43 H 0.183 0.817 44 H 0.188 0.812 45 H 0.196 0.804 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 12.173 -15.126 -34.701 39.764 hybrid contribution 0.116 0.783 2.101 2.245 sum 12.289 -14.344 -32.600 37.677 Atomic orbital electron populations 1.21663 0.94929 1.01826 1.01023 1.21840 0.97489 0.97273 0.99527 1.24509 0.87591 0.97497 1.06130 1.94920 1.84607 1.76628 1.29793 0.86047 0.80526 0.78891 0.75731 1.17620 1.25095 1.16320 1.24257 0.94805 0.74946 0.79906 1.90341 1.67164 1.48324 1.43234 1.46256 1.07391 1.60691 1.22990 1.22091 0.81395 0.99443 0.99156 1.21635 0.95901 0.93375 0.87399 1.94825 1.81554 1.54397 1.29004 1.32428 0.93319 0.92405 0.74120 1.22158 1.02966 1.03345 0.86765 1.21861 0.95772 0.95244 0.97441 1.21861 0.97614 0.96500 0.98144 1.21639 0.99569 1.00224 0.89990 1.21558 0.98187 0.95792 1.00152 1.32135 0.86878 0.76454 0.97709 1.21653 0.93242 0.99753 1.01609 1.21629 1.00683 0.89649 0.98685 1.21882 0.96143 1.00011 0.96141 1.21748 0.94105 0.95196 0.99013 1.21860 1.03244 0.89459 1.01055 0.89845 0.94948 0.92581 0.95305 0.91120 0.76149 0.95798 0.93659 0.94167 0.96737 0.82168 0.79835 0.81018 0.82576 0.86487 0.84581 0.81745 0.81182 0.80380 0.82776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.42 9.20 71.98 0.66 -5.76 16 2 C -0.12 -6.60 4.82 30.60 0.15 -6.46 16 3 C -0.06 -3.73 0.64 29.85 0.02 -3.71 16 4 O -0.91 -74.92 16.74 -129.94 -2.17 -77.09 16 5 Si 0.96 53.30 24.06 68.60 1.65 54.95 16 6 H -0.25 -12.90 6.38 99.48 0.63 -12.27 16 7 H -0.32 -19.76 7.11 99.48 0.71 -19.06 16 8 H -0.24 -10.91 7.10 99.48 0.71 -10.21 16 9 C 0.47 31.01 6.01 87.66 0.53 31.53 16 10 O -0.61 -46.15 16.50 16.00 0.26 -45.89 16 11 N -0.72 -38.70 4.99 -463.06 -2.31 -41.01 16 12 C 0.10 5.08 6.06 86.38 0.52 5.60 16 13 C 0.10 4.00 5.04 71.98 0.36 4.36 16 14 O -0.65 -27.90 13.31 -148.98 -1.98 -29.89 16 15 C 0.08 1.89 9.45 22.82 0.22 2.10 16 16 C -0.13 -1.86 9.15 22.48 0.21 -1.65 16 17 C -0.09 -0.72 10.03 22.24 0.22 -0.50 16 18 C -0.12 -1.24 10.04 22.34 0.22 -1.01 16 19 C -0.10 -1.65 10.03 22.24 0.22 -1.42 16 20 C -0.14 -3.62 9.76 22.48 0.22 -3.40 16 21 C 0.07 1.51 7.20 22.82 0.16 1.67 16 22 C -0.14 -2.73 8.40 22.48 0.19 -2.54 16 23 C -0.09 -1.00 10.03 22.24 0.22 -0.77 16 24 C -0.12 -0.87 10.04 22.34 0.22 -0.64 16 25 C -0.08 -0.60 10.03 22.24 0.22 -0.38 16 26 C -0.14 -1.83 8.42 22.48 0.19 -1.64 16 27 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 28 H 0.03 1.70 7.82 -2.39 -0.02 1.68 16 29 H 0.06 2.43 5.34 -2.39 -0.01 2.42 16 30 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.07 3.16 7.35 -2.39 -0.02 3.14 16 32 H 0.40 19.63 7.07 -92.70 -0.66 18.98 16 33 H 0.02 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.04 1.42 5.36 -2.39 -0.01 1.40 16 36 H 0.01 0.56 7.75 -2.39 -0.02 0.55 16 37 H 0.16 1.47 6.42 -2.91 -0.02 1.45 16 38 H 0.18 0.05 8.06 -2.91 -0.02 0.02 16 39 H 0.17 0.53 8.06 -2.91 -0.02 0.51 16 40 H 0.16 2.11 8.06 -2.91 -0.02 2.08 16 41 H 0.12 3.96 7.80 -2.91 -0.02 3.94 16 42 H 0.14 2.96 6.46 -2.91 -0.02 2.94 16 43 H 0.17 1.05 8.06 -2.91 -0.02 1.02 16 44 H 0.17 0.10 8.06 -2.91 -0.02 0.08 16 45 H 0.18 0.06 8.06 -2.91 -0.02 0.04 16 46 H 0.15 1.66 7.91 -2.91 -0.02 1.64 16 Total: -1.00 -116.36 390.74 1.22 -115.13 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: 1.01 Total: 8.41 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: 4.77 Total: 15.38 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: -2.31 Total: -41.01 kcal Atomic # 8 Polarization: -148.97 SS G_CDS: -3.89 Total: -152.87 kcal Atomic # 14 Polarization: 53.30 SS G_CDS: 1.65 Total: 54.95 kcal Total: -116.36 1.22 -115.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143971962.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.545 kcal (2) G-P(sol) polarization free energy of solvation -116.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -115.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds