Wall clock time and date at job start Tue Mar 24 2020 12:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46897 * 109.47165 * 2 1 4 4 C 1.46902 * 110.99741 * 66.05032 * 3 2 1 5 5 C 1.53002 * 109.46788 * 200.62769 * 4 3 2 6 6 C 1.46901 * 110.99944 * 190.00110 * 3 2 1 7 7 C 1.53002 * 109.47007 * 76.84702 * 6 3 2 8 8 N 1.46497 * 109.47113 * 184.50985 * 7 6 3 9 9 C 1.38156 * 119.99830 * 269.99897 * 8 7 6 10 10 N 1.30186 * 120.00430 * 219.55615 * 9 8 7 11 11 N 1.37451 * 120.00213 * 39.55468 * 9 8 7 12 12 C 1.34773 * 120.00469 * 89.99586 * 8 7 6 13 13 O 1.21257 * 119.99762 * 355.43680 * 12 8 7 14 14 C 1.50699 * 120.00202 * 175.43819 * 12 8 7 15 15 O 1.42903 * 109.47138 * 169.48239 * 14 12 8 16 16 Si 1.86295 * 109.47112 * 289.48128 * 14 12 8 17 17 H 1.48500 * 109.47478 * 115.42764 * 16 14 12 18 18 H 1.48505 * 109.47469 * 235.42712 * 16 14 12 19 19 H 1.48504 * 109.47327 * 355.42514 * 16 14 12 20 20 C 1.52998 * 109.47297 * 49.48392 * 14 12 8 21 21 C 1.50694 * 109.47174 * 187.75265 * 20 14 12 22 22 C 1.38243 * 119.99525 * 269.72427 * 21 20 14 23 23 C 1.38236 * 119.99816 * 179.76997 * 22 21 20 24 24 C 1.38238 * 119.99981 * 0.50042 * 23 22 21 25 25 C 1.38237 * 119.99803 * 359.75038 * 24 23 22 26 26 C 1.38231 * 120.00562 * 89.99727 * 21 20 14 27 27 H 1.08994 * 109.47350 * 59.99706 * 1 2 3 28 28 H 1.09005 * 109.47303 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46788 * 299.99463 * 1 2 3 30 30 H 1.09004 * 109.46788 * 240.00536 * 2 1 3 31 31 H 1.08998 * 109.47446 * 120.00807 * 2 1 3 32 32 H 1.09000 * 109.47143 * 320.62406 * 4 3 2 33 33 H 1.09001 * 109.47297 * 80.62959 * 4 3 2 34 34 H 1.09006 * 109.46863 * 184.59533 * 5 4 3 35 35 H 1.09000 * 109.47326 * 304.58837 * 5 4 3 36 36 H 1.08992 * 109.47060 * 64.59684 * 5 4 3 37 37 H 1.09001 * 109.46935 * 316.84678 * 6 3 2 38 38 H 1.08998 * 109.47067 * 196.84310 * 6 3 2 39 39 H 1.08995 * 109.47193 * 64.50583 * 7 6 3 40 40 H 1.08997 * 109.46670 * 304.50403 * 7 6 3 41 41 H 0.97007 * 119.99448 * 328.72260 * 10 9 8 42 42 H 0.96995 * 119.99517 * 0.02562 * 11 9 8 43 43 H 0.96997 * 119.99987 * 179.97438 * 11 9 8 44 44 H 1.09006 * 109.46884 * 307.74950 * 20 14 12 45 45 H 1.08995 * 109.47419 * 67.74478 * 20 14 12 46 46 H 1.07995 * 119.99771 * 359.97438 * 22 21 20 47 47 H 1.07997 * 120.00087 * 180.22887 * 23 22 21 48 48 H 1.07999 * 120.00096 * 179.72738 * 24 23 22 49 49 H 1.08003 * 119.99451 * 179.97438 * 25 24 23 50 50 H 1.07998 * 119.99644 * 0.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6703 2.0668 1.2534 5 6 1.7164 3.5812 1.0401 6 6 3.4685 1.4311 -0.2382 7 6 3.7486 1.2009 -1.7246 8 7 5.1955 1.1395 -1.9451 9 6 5.9007 2.2934 -2.2280 10 7 6.8568 2.2720 -3.1113 11 7 5.5927 3.4641 -1.5769 12 6 5.8389 -0.0425 -1.8720 13 8 5.2359 -1.0416 -1.5427 14 6 7.3077 -0.1224 -2.1995 15 8 7.8117 -1.4042 -1.8183 16 14 7.5499 0.1204 -4.0306 17 1 8.3160 1.3704 -4.2672 18 1 8.3006 -1.0332 -4.5880 19 1 6.2260 0.2177 -4.6964 20 6 8.0606 0.9691 -1.4362 21 6 9.4920 1.0137 -1.9051 22 6 10.4502 0.2423 -1.2743 23 6 11.7625 0.2795 -1.7074 24 6 12.1185 1.0960 -2.7645 25 6 11.1613 1.8713 -3.3919 26 6 9.8481 1.8302 -2.9622 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 0.6659 1.7734 1.5589 33 1 2.3825 1.7874 2.0298 34 1 1.5374 4.0873 1.9887 35 1 2.6966 3.8644 0.6565 36 1 0.9481 3.8707 0.3232 37 1 3.9581 0.6537 0.3485 38 1 3.8544 2.4067 0.0574 39 1 3.3270 2.0214 -2.3051 40 1 3.2931 0.2618 -2.0389 41 1 7.3815 1.4661 -3.2386 42 1 4.8806 3.4800 -0.9186 43 1 6.0881 4.2741 -1.7753 44 1 7.5876 1.9337 -1.6209 45 1 8.0345 0.7501 -0.3688 46 1 10.1729 -0.3919 -0.4453 47 1 12.5104 -0.3259 -1.2170 48 1 13.1446 1.1284 -3.1001 49 1 11.4396 2.5095 -4.2176 50 1 9.1004 2.4364 -3.4518 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181380636.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 24 2020 12:08:43 Heat of formation + Delta-G solvation = 90.553444 kcal Electronic energy + Delta-G solvation = -31206.935796 eV Core-core repulsion = 27240.241849 eV Total energy + Delta-G solvation = -3966.693948 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.63770 -38.58473 -38.01386 -36.74509 -34.46190 -33.12315 -31.89949 -31.41457 -30.42961 -29.90066 -29.80159 -27.24996 -26.21849 -23.78560 -23.13218 -22.84451 -21.83212 -21.14712 -20.39537 -19.98401 -19.54174 -16.76729 -16.62186 -16.20805 -16.10164 -15.73545 -15.18404 -15.04985 -14.68127 -14.52462 -14.20286 -13.97132 -13.83804 -13.60427 -13.29732 -12.99508 -12.69775 -12.61267 -12.46389 -12.29169 -12.12602 -11.92270 -11.84972 -11.67687 -11.56111 -11.45512 -11.28868 -10.75214 -10.67045 -10.54400 -10.32089 -10.19927 -10.12229 -9.46551 -9.28499 -8.85160 -8.77727 -8.62916 -8.36695 -7.95690 -7.82336 -7.41769 -5.91167 -5.43609 2.16748 2.22020 2.61269 3.12265 3.23890 3.37382 3.50530 3.80526 3.90814 4.34881 4.45741 4.65560 4.84155 4.93758 5.09537 5.15456 5.19087 5.35737 5.42230 5.51708 5.56566 5.60111 5.60389 5.67684 5.69472 5.74531 5.82796 5.88116 5.94415 5.98991 6.06307 6.09616 6.12421 6.18654 6.33148 6.36643 6.44627 6.52088 6.72613 6.78003 6.86530 6.92247 7.03991 7.04630 7.20497 7.24853 7.29083 7.54160 7.65331 7.79495 7.87600 7.90639 8.87536 9.08175 9.89973 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019305 B = 0.003687 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.079037 B = 7592.917751 C = 7987.017234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.045 3.955 3 N -0.535 5.535 4 C 0.044 3.956 5 C -0.145 4.145 6 C 0.038 3.962 7 C 0.105 3.895 8 N -0.606 5.606 9 C 0.654 3.346 10 N -0.812 5.812 11 N -0.839 5.839 12 C 0.487 3.513 13 O -0.509 6.509 14 C -0.013 4.013 15 O -0.806 6.806 16 Si 0.909 3.091 17 H -0.227 1.227 18 H -0.291 1.291 19 H -0.295 1.295 20 C -0.158 4.158 21 C -0.050 4.050 22 C -0.087 4.087 23 C -0.135 4.135 24 C -0.140 4.140 25 C -0.137 4.137 26 C -0.130 4.130 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.081 0.919 31 H 0.034 0.966 32 H 0.076 0.924 33 H 0.034 0.966 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.048 0.952 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.357 0.643 42 H 0.397 0.603 43 H 0.415 0.585 44 H 0.101 0.899 45 H 0.058 0.942 46 H 0.120 0.880 47 H 0.111 0.889 48 H 0.109 0.891 49 H 0.112 0.888 50 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.941 12.511 4.599 15.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.083 4.083 3 N -0.261 5.261 4 C -0.084 4.084 5 C -0.203 4.203 6 C -0.091 4.091 7 C -0.020 4.020 8 N -0.350 5.350 9 C 0.291 3.709 10 N -0.486 5.486 11 N -0.396 5.396 12 C 0.279 3.721 13 O -0.379 6.379 14 C -0.116 4.116 15 O -0.748 6.748 16 Si 0.741 3.259 17 H -0.156 1.156 18 H -0.219 1.219 19 H -0.223 1.223 20 C -0.196 4.196 21 C -0.050 4.050 22 C -0.105 4.105 23 C -0.153 4.153 24 C -0.158 4.158 25 C -0.155 4.155 26 C -0.148 4.148 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.099 0.901 31 H 0.053 0.947 32 H 0.095 0.905 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.200 0.800 42 H 0.228 0.772 43 H 0.247 0.753 44 H 0.118 0.882 45 H 0.076 0.924 46 H 0.138 0.862 47 H 0.129 0.871 48 H 0.128 0.872 49 H 0.130 0.870 50 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -7.889 12.411 3.005 15.011 hybrid contribution -0.154 -1.163 1.440 1.857 sum -8.043 11.248 4.445 14.525 Atomic orbital electron populations 1.21815 0.94988 1.01466 1.02119 1.22165 0.95679 0.88711 1.01733 1.62003 1.13425 1.16111 1.34517 1.22166 1.00929 0.94991 0.90339 1.21767 1.02305 0.94793 1.01399 1.22606 0.87751 1.01182 0.97545 1.21468 0.81449 1.03876 0.95167 1.47858 1.07841 1.08013 1.71241 1.18743 0.89289 0.79660 0.83247 1.69878 1.19410 1.41253 1.18017 1.42297 1.43120 1.10379 1.43756 1.25168 0.93310 0.80251 0.73386 1.90443 1.68457 1.34910 1.44056 1.24210 0.85549 0.99165 1.02717 1.95090 1.76827 1.18769 1.84121 0.87384 0.79431 0.76646 0.82412 1.15648 1.21944 1.22336 1.22635 0.93183 1.02590 1.01178 1.19761 0.95821 0.94438 0.94956 1.21094 0.92123 0.97013 1.00318 1.21033 0.96367 0.99840 0.98093 1.20929 0.98641 0.98657 0.97541 1.20957 0.93467 1.00648 1.00424 1.21697 0.96476 0.99857 0.96747 0.91889 0.92352 0.92878 0.90062 0.94739 0.90541 0.94779 0.92574 0.92745 0.91985 0.93349 0.91153 0.90111 0.89404 0.80010 0.77181 0.75298 0.88197 0.92354 0.86186 0.87071 0.87245 0.86981 0.83734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.89 37.16 0.37 -1.09 16 2 C 0.04 0.57 5.50 -3.83 -0.02 0.55 16 3 N -0.54 -6.56 4.35 -234.62 -1.02 -7.58 16 4 C 0.04 0.44 5.54 -3.82 -0.02 0.42 16 5 C -0.14 -1.21 10.07 37.16 0.37 -0.84 16 6 C 0.04 0.55 5.00 -3.82 -0.02 0.53 16 7 C 0.10 1.77 5.13 -4.04 -0.02 1.74 16 8 N -0.61 -12.67 2.60 -116.81 -0.30 -12.98 16 9 C 0.65 12.23 5.69 -319.36 -1.82 10.41 16 10 N -0.81 -17.12 8.92 30.25 0.27 -16.85 16 11 N -0.84 -10.65 8.91 30.24 0.27 -10.38 16 12 C 0.49 13.17 5.88 -10.99 -0.06 13.11 16 13 O -0.51 -15.20 16.16 -14.11 -0.23 -15.43 16 14 C -0.01 -0.36 0.63 -27.88 -0.02 -0.38 16 15 O -0.81 -28.74 16.86 -54.92 -0.93 -29.66 16 16 Si 0.91 24.73 21.02 -169.99 -3.57 21.16 16 17 H -0.23 -5.38 3.28 56.52 0.19 -5.19 16 18 H -0.29 -8.70 7.11 56.52 0.40 -8.30 16 19 H -0.30 -7.96 7.11 56.52 0.40 -7.56 16 20 C -0.16 -3.91 4.05 -27.89 -0.11 -4.02 16 21 C -0.05 -1.18 4.11 -104.63 -0.43 -1.61 16 22 C -0.09 -2.01 9.50 -39.58 -0.38 -2.38 16 23 C -0.14 -2.64 10.05 -39.58 -0.40 -3.04 16 24 C -0.14 -2.51 10.05 -39.58 -0.40 -2.91 16 25 C -0.14 -2.56 10.05 -39.58 -0.40 -2.96 16 26 C -0.13 -2.78 7.02 -39.59 -0.28 -3.06 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.47 6.24 -51.93 -0.32 0.15 16 30 H 0.08 1.18 6.64 -51.93 -0.34 0.84 16 31 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 32 H 0.08 0.70 5.87 -51.93 -0.30 0.39 16 33 H 0.03 0.36 7.99 -51.93 -0.41 -0.05 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.05 0.45 6.73 -51.93 -0.35 0.10 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.05 0.85 7.98 -51.93 -0.41 0.43 16 38 H 0.07 0.85 4.37 -51.93 -0.23 0.62 16 39 H 0.08 1.17 8.04 -51.93 -0.42 0.75 16 40 H 0.09 1.64 6.08 -51.93 -0.32 1.32 16 41 H 0.36 8.43 0.00 0.00 0.00 8.43 16 42 H 0.40 4.15 6.18 -40.82 -0.25 3.90 16 43 H 0.42 4.33 8.94 -40.82 -0.37 3.97 16 44 H 0.10 2.20 3.16 -71.92 -0.23 1.98 16 45 H 0.06 1.48 8.08 -51.93 -0.42 1.06 16 46 H 0.12 2.84 8.06 -52.49 -0.42 2.42 16 47 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 48 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 49 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 50 H 0.15 3.02 4.92 -52.49 -0.26 2.76 16 LS Contribution 368.62 15.07 5.56 5.56 Total: -1.00 -38.30 368.62 -11.04 -49.34 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -7.45 Total: 12.35 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: -3.63 Total: 4.47 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: -0.79 Total: -47.79 kcal Atomic # 8 Polarization: -43.93 SS G_CDS: -1.15 Total: -45.09 kcal Atomic # 14 Polarization: 24.73 SS G_CDS: -3.57 Total: 21.16 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -38.30 -11.04 -49.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181380636.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.894 kcal (2) G-P(sol) polarization free energy of solvation -38.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds