Wall clock time and date at job start Tue Mar 24 2020 12:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46897 * 109.47165 * 2 1 4 4 C 1.46902 * 110.99741 * 66.05032 * 3 2 1 5 5 C 1.53002 * 109.46788 * 200.62769 * 4 3 2 6 6 C 1.46901 * 110.99944 * 190.00110 * 3 2 1 7 7 C 1.53002 * 109.47007 * 76.84702 * 6 3 2 8 8 N 1.46497 * 109.47113 * 184.50985 * 7 6 3 9 9 C 1.38156 * 119.99830 * 269.99897 * 8 7 6 10 10 N 1.30186 * 120.00430 * 219.55615 * 9 8 7 11 11 N 1.37451 * 120.00213 * 39.55468 * 9 8 7 12 12 C 1.34773 * 120.00469 * 89.99586 * 8 7 6 13 13 O 1.21257 * 119.99762 * 355.43680 * 12 8 7 14 14 C 1.50699 * 120.00202 * 175.43819 * 12 8 7 15 15 O 1.42903 * 109.47138 * 169.48239 * 14 12 8 16 16 Si 1.86295 * 109.47112 * 289.48128 * 14 12 8 17 17 H 1.48500 * 109.47478 * 115.42764 * 16 14 12 18 18 H 1.48505 * 109.47469 * 235.42712 * 16 14 12 19 19 H 1.48504 * 109.47327 * 355.42514 * 16 14 12 20 20 C 1.52998 * 109.47297 * 49.48392 * 14 12 8 21 21 C 1.50694 * 109.47174 * 187.75265 * 20 14 12 22 22 C 1.38243 * 119.99525 * 269.72427 * 21 20 14 23 23 C 1.38236 * 119.99816 * 179.76997 * 22 21 20 24 24 C 1.38238 * 119.99981 * 0.50042 * 23 22 21 25 25 C 1.38237 * 119.99803 * 359.75038 * 24 23 22 26 26 C 1.38231 * 120.00562 * 89.99727 * 21 20 14 27 27 H 1.08994 * 109.47350 * 59.99706 * 1 2 3 28 28 H 1.09005 * 109.47303 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46788 * 299.99463 * 1 2 3 30 30 H 1.09004 * 109.46788 * 240.00536 * 2 1 3 31 31 H 1.08998 * 109.47446 * 120.00807 * 2 1 3 32 32 H 1.09000 * 109.47143 * 320.62406 * 4 3 2 33 33 H 1.09001 * 109.47297 * 80.62959 * 4 3 2 34 34 H 1.09006 * 109.46863 * 184.59533 * 5 4 3 35 35 H 1.09000 * 109.47326 * 304.58837 * 5 4 3 36 36 H 1.08992 * 109.47060 * 64.59684 * 5 4 3 37 37 H 1.09001 * 109.46935 * 316.84678 * 6 3 2 38 38 H 1.08998 * 109.47067 * 196.84310 * 6 3 2 39 39 H 1.08995 * 109.47193 * 64.50583 * 7 6 3 40 40 H 1.08997 * 109.46670 * 304.50403 * 7 6 3 41 41 H 0.97007 * 119.99448 * 328.72260 * 10 9 8 42 42 H 0.96995 * 119.99517 * 0.02562 * 11 9 8 43 43 H 0.96997 * 119.99987 * 179.97438 * 11 9 8 44 44 H 1.09006 * 109.46884 * 307.74950 * 20 14 12 45 45 H 1.08995 * 109.47419 * 67.74478 * 20 14 12 46 46 H 1.07995 * 119.99771 * 359.97438 * 22 21 20 47 47 H 1.07997 * 120.00087 * 180.22887 * 23 22 21 48 48 H 1.07999 * 120.00096 * 179.72738 * 24 23 22 49 49 H 1.08003 * 119.99451 * 179.97438 * 25 24 23 50 50 H 1.07998 * 119.99644 * 0.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6703 2.0668 1.2534 5 6 1.7164 3.5812 1.0401 6 6 3.4685 1.4311 -0.2382 7 6 3.7486 1.2009 -1.7246 8 7 5.1955 1.1395 -1.9451 9 6 5.9007 2.2934 -2.2280 10 7 6.8568 2.2720 -3.1113 11 7 5.5927 3.4641 -1.5769 12 6 5.8389 -0.0425 -1.8720 13 8 5.2359 -1.0416 -1.5427 14 6 7.3077 -0.1224 -2.1995 15 8 7.8117 -1.4042 -1.8183 16 14 7.5499 0.1204 -4.0306 17 1 8.3160 1.3704 -4.2672 18 1 8.3006 -1.0332 -4.5880 19 1 6.2260 0.2177 -4.6964 20 6 8.0606 0.9691 -1.4362 21 6 9.4920 1.0137 -1.9051 22 6 10.4502 0.2423 -1.2743 23 6 11.7625 0.2795 -1.7074 24 6 12.1185 1.0960 -2.7645 25 6 11.1613 1.8713 -3.3919 26 6 9.8481 1.8302 -2.9622 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 0.6659 1.7734 1.5589 33 1 2.3825 1.7874 2.0298 34 1 1.5374 4.0873 1.9887 35 1 2.6966 3.8644 0.6565 36 1 0.9481 3.8707 0.3232 37 1 3.9581 0.6537 0.3485 38 1 3.8544 2.4067 0.0574 39 1 3.3270 2.0214 -2.3051 40 1 3.2931 0.2618 -2.0389 41 1 7.3815 1.4661 -3.2386 42 1 4.8806 3.4800 -0.9186 43 1 6.0881 4.2741 -1.7753 44 1 7.5876 1.9337 -1.6209 45 1 8.0345 0.7501 -0.3688 46 1 10.1729 -0.3919 -0.4453 47 1 12.5104 -0.3259 -1.2170 48 1 13.1446 1.1284 -3.1001 49 1 11.4396 2.5095 -4.2176 50 1 9.1004 2.4364 -3.4518 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181380636.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 24 2020 12:08:42 Heat of formation + Delta-G solvation = 61.047193 kcal Electronic energy + Delta-G solvation = -31208.215283 eV Core-core repulsion = 27240.241849 eV Total energy + Delta-G solvation = -3967.973435 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.43983 -40.14641 -39.18841 -38.65227 -36.15767 -34.71643 -33.02562 -32.70798 -32.11896 -31.63757 -31.25920 -28.67638 -28.01526 -25.53854 -24.21291 -24.00486 -23.41693 -22.89939 -21.71557 -21.42664 -21.24714 -18.34589 -18.28425 -17.74336 -17.57942 -16.96197 -16.67264 -16.46000 -16.23002 -15.89094 -15.79863 -15.49654 -15.33237 -14.89768 -14.83279 -14.66829 -14.59730 -14.17234 -13.79957 -13.61651 -13.53116 -13.32298 -13.18644 -13.01350 -12.62025 -12.51586 -12.49052 -12.41142 -12.28884 -11.95265 -11.85523 -11.75366 -11.57462 -11.42258 -11.21334 -10.95098 -10.55224 -10.29292 -9.58312 -9.50948 -9.46459 -9.12219 -8.36778 -7.88509 0.55155 0.60600 0.81508 1.12863 1.19689 1.30311 1.51876 1.82912 2.34976 2.75183 2.95090 3.03664 3.67994 3.84868 3.95024 3.98097 4.09174 4.14319 4.22955 4.25571 4.30631 4.35230 4.38708 4.43218 4.50377 4.55819 4.58383 4.64189 4.68401 4.74543 4.77265 4.80887 4.87320 4.93530 4.97571 5.04527 5.10255 5.13745 5.26782 5.29466 5.31545 5.38944 5.43569 5.68717 5.70053 5.88626 5.93793 6.00365 6.07023 6.25831 6.28777 6.39163 6.98222 7.37450 7.66281 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019305 B = 0.003687 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.079037 B = 7592.917751 C = 7987.017234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.041 3.959 3 N -0.527 5.527 4 C 0.039 3.961 5 C -0.141 4.141 6 C 0.050 3.950 7 C 0.103 3.897 8 N -0.602 5.602 9 C 0.653 3.347 10 N -0.825 5.825 11 N -0.801 5.801 12 C 0.483 3.517 13 O -0.556 6.556 14 C -0.057 4.057 15 O -0.888 6.888 16 Si 0.934 3.066 17 H -0.160 1.160 18 H -0.340 1.340 19 H -0.298 1.298 20 C -0.142 4.142 21 C -0.082 4.082 22 C -0.123 4.123 23 C -0.135 4.135 24 C -0.128 4.128 25 C -0.129 4.129 26 C -0.143 4.143 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.020 0.980 32 H 0.090 0.910 33 H 0.026 0.974 34 H 0.072 0.928 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.007 0.993 38 H 0.100 0.900 39 H 0.118 0.882 40 H 0.064 0.936 41 H 0.340 0.660 42 H 0.413 0.587 43 H 0.434 0.566 44 H 0.131 0.869 45 H 0.028 0.972 46 H 0.089 0.911 47 H 0.138 0.862 48 H 0.158 0.842 49 H 0.157 0.843 50 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.736 17.360 3.745 19.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.087 4.087 3 N -0.252 5.252 4 C -0.088 4.088 5 C -0.199 4.199 6 C -0.080 4.080 7 C -0.020 4.020 8 N -0.344 5.344 9 C 0.289 3.711 10 N -0.498 5.498 11 N -0.359 5.359 12 C 0.275 3.725 13 O -0.430 6.430 14 C -0.157 4.157 15 O -0.833 6.833 16 Si 0.767 3.233 17 H -0.086 1.086 18 H -0.273 1.273 19 H -0.227 1.227 20 C -0.180 4.180 21 C -0.082 4.082 22 C -0.141 4.141 23 C -0.153 4.153 24 C -0.146 4.146 25 C -0.146 4.146 26 C -0.160 4.160 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.038 0.962 32 H 0.108 0.892 33 H 0.045 0.955 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.026 0.974 38 H 0.118 0.882 39 H 0.136 0.864 40 H 0.082 0.918 41 H 0.180 0.820 42 H 0.247 0.753 43 H 0.270 0.730 44 H 0.148 0.852 45 H 0.047 0.953 46 H 0.107 0.893 47 H 0.156 0.844 48 H 0.175 0.825 49 H 0.175 0.825 50 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -7.745 17.428 2.193 19.197 hybrid contribution -0.248 -2.634 1.802 3.201 sum -7.992 14.794 3.995 17.283 Atomic orbital electron populations 1.21743 0.92306 1.02254 1.03054 1.22183 0.97849 0.88876 0.99787 1.62073 1.11382 1.15695 1.36048 1.22339 1.01404 0.96257 0.88834 1.21761 1.02641 0.92933 1.02554 1.22424 0.89272 1.01278 0.95012 1.21724 0.78542 1.04163 0.97586 1.47482 1.09662 1.07089 1.70136 1.19048 0.88495 0.80516 0.83010 1.69856 1.20197 1.39455 1.20339 1.42119 1.43025 1.08810 1.41972 1.24577 0.93204 0.81481 0.73270 1.90401 1.69264 1.36986 1.46334 1.24938 0.86865 0.98056 1.05868 1.94996 1.79200 1.22732 1.86396 0.87064 0.79612 0.77363 0.79239 1.08610 1.27324 1.22656 1.22438 0.94603 1.02197 0.98725 1.19805 0.94936 0.96497 0.96981 1.21108 0.94342 0.97895 1.00790 1.21380 0.95165 1.00151 0.98593 1.21473 1.00877 0.96497 0.95720 1.21499 0.92113 1.00260 1.00755 1.21771 0.98263 0.99733 0.96268 0.91493 0.91766 0.91218 0.92803 0.96160 0.89174 0.95531 0.90871 0.92449 0.91557 0.97413 0.88160 0.86398 0.91796 0.82014 0.75316 0.73045 0.85228 0.95288 0.89314 0.84396 0.82481 0.82527 0.83141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.89 71.98 0.71 -1.86 16 2 C 0.04 1.08 5.50 86.30 0.47 1.55 16 3 N -0.53 -12.43 4.35 -896.21 -3.90 -16.33 16 4 C 0.04 0.70 5.54 86.30 0.48 1.18 16 5 C -0.14 -1.85 10.07 71.98 0.73 -1.13 16 6 C 0.05 1.42 5.00 86.30 0.43 1.85 16 7 C 0.10 3.45 5.13 86.38 0.44 3.89 16 8 N -0.60 -25.45 2.60 -641.88 -1.67 -27.12 16 9 C 0.65 23.25 5.69 260.28 1.48 24.73 16 10 N -0.83 -33.16 8.92 -58.20 -0.52 -33.68 16 11 N -0.80 -17.31 8.91 -58.25 -0.52 -17.83 16 12 C 0.48 27.62 5.88 87.66 0.52 28.13 16 13 O -0.56 -35.90 16.16 15.87 0.26 -35.65 16 14 C -0.06 -3.46 0.63 29.85 0.02 -3.44 16 15 O -0.89 -68.54 16.86 -130.15 -2.19 -70.74 16 16 Si 0.93 51.93 21.02 68.60 1.44 53.37 16 17 H -0.16 -7.23 3.28 99.48 0.33 -6.90 16 18 H -0.34 -21.58 7.11 99.48 0.71 -20.87 16 19 H -0.30 -16.29 7.11 99.48 0.71 -15.58 16 20 C -0.14 -7.32 4.05 29.85 0.12 -7.20 16 21 C -0.08 -3.95 4.11 -19.87 -0.08 -4.03 16 22 C -0.12 -5.87 9.50 22.27 0.21 -5.66 16 23 C -0.14 -5.08 10.05 22.27 0.22 -4.86 16 24 C -0.13 -4.06 10.05 22.27 0.22 -3.83 16 25 C -0.13 -4.24 10.05 22.27 0.22 -4.01 16 26 C -0.14 -5.78 7.02 22.27 0.16 -5.62 16 27 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 29 H 0.07 1.09 6.24 -2.39 -0.01 1.07 16 30 H 0.05 1.70 6.64 -2.39 -0.02 1.68 16 31 H 0.02 0.58 8.12 -2.39 -0.02 0.56 16 32 H 0.09 1.41 5.87 -2.39 -0.01 1.39 16 33 H 0.03 0.53 7.99 -2.39 -0.02 0.51 16 34 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 35 H 0.06 0.71 6.73 -2.39 -0.02 0.70 16 36 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.01 0.28 7.98 -2.39 -0.02 0.26 16 38 H 0.10 2.18 4.37 -2.39 -0.01 2.17 16 39 H 0.12 3.10 8.04 -2.39 -0.02 3.08 16 40 H 0.06 2.50 6.08 -2.39 -0.01 2.48 16 41 H 0.34 15.81 0.00 0.00 0.00 15.81 16 42 H 0.41 6.87 6.18 -92.71 -0.57 6.30 16 43 H 0.43 6.97 8.94 -92.71 -0.83 6.14 16 44 H 0.13 5.70 3.16 -41.87 -0.13 5.56 16 45 H 0.03 1.58 8.08 -2.39 -0.02 1.56 16 46 H 0.09 4.63 8.06 -2.91 -0.02 4.60 16 47 H 0.14 4.31 8.06 -2.91 -0.02 4.29 16 48 H 0.16 3.54 8.06 -2.91 -0.02 3.52 16 49 H 0.16 3.80 8.06 -2.91 -0.02 3.77 16 50 H 0.15 5.77 4.92 -2.91 -0.01 5.76 16 Total: -1.00 -95.62 368.62 -0.91 -96.53 By element: Atomic # 1 Polarization: 31.91 SS G_CDS: -0.16 Total: 31.75 kcal Atomic # 6 Polarization: 13.34 SS G_CDS: 6.36 Total: 19.70 kcal Atomic # 7 Polarization: -88.35 SS G_CDS: -6.61 Total: -94.96 kcal Atomic # 8 Polarization: -104.45 SS G_CDS: -1.94 Total: -106.38 kcal Atomic # 14 Polarization: 51.93 SS G_CDS: 1.44 Total: 53.37 kcal Total: -95.62 -0.91 -96.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181380636.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.573 kcal (2) G-P(sol) polarization free energy of solvation -95.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds