Wall clock time and date at job start Tue Mar 24 2020 12:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.21275 * 1 3 3 N 1.34777 * 119.99888 * 2 1 4 4 C 1.46495 * 119.99802 * 0.02562 * 3 2 1 5 5 C 1.53009 * 109.46826 * 179.97438 * 4 3 2 6 6 O 1.42897 * 109.46882 * 65.00054 * 5 4 3 7 Xx 1.42005 * 113.99936 * 186.05505 * 6 5 4 8 7 C 1.56996 * 120.00104 * 174.22427 * 7 6 5 9 8 C 1.39372 * 120.11677 * 171.88816 * 8 7 6 10 9 C 1.37978 * 119.88022 * 179.72214 * 9 8 7 11 10 C 1.38379 * 120.11443 * 0.55781 * 10 9 8 12 11 C 1.38371 * 120.24273 * 359.71466 * 11 10 9 13 12 C 1.37979 * 120.11618 * 0.02562 * 12 11 10 14 13 C 1.57006 * 119.99856 * 354.23239 * 7 6 5 15 14 C 1.39374 * 120.11224 * 309.59615 * 14 7 6 16 15 C 1.37983 * 119.87383 * 179.72683 * 15 14 7 17 16 C 1.38373 * 120.11905 * 0.54845 * 16 15 14 18 17 C 1.38376 * 120.23965 * 359.72169 * 17 16 15 19 18 C 1.37974 * 120.11830 * 0.02562 * 18 17 16 20 19 C 1.50698 * 120.00244 * 179.97438 * 2 1 3 21 20 O 1.42903 * 109.47113 * 0.02562 * 20 2 1 22 21 Si 1.86304 * 109.47124 * 120.00034 * 20 2 1 23 22 H 1.48504 * 109.47072 * 180.02562 * 22 20 2 24 23 H 1.48504 * 109.46931 * 299.99903 * 22 20 2 25 24 H 1.48499 * 109.47118 * 59.99967 * 22 20 2 26 25 C 1.52997 * 109.47588 * 240.00053 * 20 2 1 27 26 C 1.52996 * 117.50283 * 184.99666 * 26 20 2 28 27 C 1.52994 * 60.00330 * 252.51233 * 27 26 20 29 28 H 0.97000 * 119.99949 * 180.02562 * 3 2 1 30 29 H 1.09000 * 109.47241 * 299.99581 * 4 3 2 31 30 H 1.08999 * 109.47787 * 60.00352 * 4 3 2 32 31 H 1.09003 * 109.47017 * 184.99862 * 5 4 3 33 32 H 1.08994 * 109.47210 * 304.99868 * 5 4 3 34 33 H 1.08005 * 120.06095 * 359.97438 * 9 8 7 35 34 H 1.07993 * 119.94527 * 180.25501 * 10 9 8 36 35 H 1.08004 * 119.87898 * 179.69968 * 11 10 9 37 36 H 1.07998 * 119.94327 * 179.97438 * 12 11 10 38 37 H 1.08001 * 120.05981 * 179.97438 * 13 12 11 39 38 H 1.07999 * 120.06399 * 359.97438 * 15 14 7 40 39 H 1.08002 * 119.93564 * 180.25507 * 16 15 14 41 40 H 1.08001 * 119.88295 * 179.70793 * 17 16 15 42 41 H 1.07992 * 119.93811 * 179.97438 * 18 17 16 43 42 H 1.07997 * 120.05961 * 179.97438 * 19 18 17 44 43 H 1.09003 * 115.55953 * 330.68928 * 26 20 2 45 44 H 1.09002 * 117.49934 * 145.01617 * 27 26 20 46 45 H 1.09002 * 117.49642 * 0.02562 * 27 26 20 47 46 H 1.08997 * 117.50081 * 107.48802 * 28 27 26 48 47 H 1.09004 * 117.49968 * 252.51221 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.2128 0.0000 0.0000 3 7 1.8866 1.1672 0.0000 4 6 1.1541 2.4359 0.0006 5 6 2.1484 3.5989 0.0011 6 8 2.8906 3.5914 -1.2200 7 6 4.9274 4.5740 -2.4836 8 6 5.8467 5.6130 -2.6172 9 6 6.7186 5.6261 -3.6865 10 6 6.6736 4.6162 -4.6314 11 6 5.7591 3.5853 -4.5067 12 6 4.8862 3.5596 -3.4384 13 6 4.1041 5.5862 -0.0977 14 6 3.0102 6.3330 0.3361 15 6 3.1611 7.2381 1.3667 16 6 4.3982 7.4131 1.9614 17 6 5.4887 6.6783 1.5308 18 6 5.3478 5.7668 0.5046 19 6 1.9663 -1.3051 0.0006 20 8 1.0377 -2.3913 0.0005 21 14 3.0374 -1.4044 -1.5205 22 1 3.7795 -2.6907 -1.5203 23 1 2.1836 -1.3263 -2.7331 24 1 4.0023 -0.2756 -1.5210 25 6 2.8459 -1.3856 1.2498 26 6 3.7829 -2.5883 1.3778 27 6 2.5374 -2.4917 2.2610 28 1 2.8566 1.1672 -0.0004 29 1 0.5271 2.4938 -0.8892 30 1 0.5278 2.4935 0.8908 31 1 1.6063 4.5403 0.0911 32 1 2.8325 3.4916 0.8428 33 1 5.8794 6.4043 -1.8829 34 1 7.4342 6.4284 -3.7888 35 1 7.3546 4.6328 -5.4695 36 1 5.7279 2.7998 -5.2472 37 1 4.1725 2.7548 -3.3421 38 1 2.0453 6.2006 -0.1307 39 1 2.3132 7.8143 1.7064 40 1 4.5130 8.1260 2.7646 41 1 6.4520 6.8191 1.9981 42 1 6.1997 5.1941 0.1689 43 1 3.1969 -0.4304 1.6403 44 1 4.7505 -2.4243 1.8523 45 1 3.7730 -3.3220 0.5717 46 1 1.7078 -3.1619 2.0362 47 1 2.6854 -2.2641 3.3166 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE ALL CONVERGERS ARE NOW FORCED ON SHIFT=1000, PULAY ON, CAMP-KING ON AND ITERATION COUNTER RESET CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182670914.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 24 2020 12:49:06 Heat of formation + Delta-G solvation = 158.823545 kcal Electronic energy + Delta-G solvation = -28653.625260 eV Core-core repulsion = 24663.077442 eV Total energy + Delta-G solvation = -3990.547818 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 51.75 seconds Orbital eigenvalues (eV) -38.76886 -38.67850 -38.44141 -36.47266 -34.62717 -31.93765 -31.28130 -31.02055 -30.74925 -30.12577 -29.65751 -27.70473 -25.07893 -22.52048 -22.12189 -21.72809 -21.72060 -21.47415 -21.05422 -20.37098 -18.59567 -16.91658 -16.50948 -16.22299 -15.37595 -14.83537 -14.79145 -14.63560 -14.58682 -14.44811 -14.34985 -13.80723 -13.63816 -13.53521 -13.33936 -12.80135 -12.73260 -12.63036 -12.59222 -12.43294 -12.01403 -11.82774 -11.52814 -11.36929 -11.32831 -11.01881 -10.98132 -10.91054 -10.75106 -10.38092 -10.26157 -9.76714 -9.20495 -8.97446 -8.90324 -8.89271 -8.67499 -8.64122 -8.10240 -7.65159 -7.45954 -7.27472 -5.61411 -4.32606 -0.61624 1.35957 1.43639 1.50962 1.57446 2.86710 3.07863 3.15083 3.50909 3.88216 3.95534 4.00130 4.26140 4.65469 4.93414 4.96245 4.98315 5.03857 5.11430 5.18936 5.46611 5.51622 5.53233 5.53451 5.60589 5.65592 5.74090 5.82976 5.84821 5.97474 5.98962 6.09444 6.11771 6.14361 6.22726 6.25446 6.36157 6.41520 6.43083 6.47500 6.55924 6.59717 6.60469 6.76473 6.80716 6.87051 6.89086 6.91676 6.96825 7.08256 7.42194 8.20952 8.24930 8.68213 9.34956 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009110 B = 0.003450 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3072.704338 B = 8114.076968 C = 9750.897363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.531 6.531 2 C 0.499 3.501 3 N -0.720 5.720 4 C 0.112 3.888 5 C 0.084 3.916 6 O -0.595 6.595 7 C 0.066 3.934 8 C -0.153 4.153 9 C -0.114 4.114 10 C -0.151 4.151 11 C -0.107 4.107 12 C -0.112 4.112 13 C 0.050 3.950 14 C -0.134 4.134 15 C -0.104 4.104 16 C -0.153 4.153 17 C -0.108 4.108 18 C -0.148 4.148 19 C -0.020 4.020 20 O -0.640 6.640 21 Si 0.978 3.022 22 H -0.261 1.261 23 H -0.267 1.267 24 H -0.259 1.259 25 C -0.169 4.169 26 C -0.188 4.188 27 C -0.153 4.153 28 H 0.400 0.600 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.031 0.969 32 H 0.009 0.991 33 H 0.128 0.872 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.129 0.871 37 H 0.142 0.858 38 H 0.138 0.862 39 H 0.127 0.873 40 H 0.121 0.879 41 H 0.125 0.875 42 H 0.129 0.871 43 H 0.097 0.903 44 H 0.086 0.914 45 H 0.093 0.907 46 H 0.110 0.890 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.700 13.731 -0.112 18.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.407 6.407 2 C 0.286 3.714 3 N -0.377 5.377 4 C -0.012 4.012 5 C -0.001 4.001 6 O -0.542 6.542 7 C 0.066 3.934 8 C -0.171 4.171 9 C -0.132 4.132 10 C -0.169 4.169 11 C -0.125 4.125 12 C -0.130 4.130 13 C 0.048 3.952 14 C -0.152 4.152 15 C -0.122 4.122 16 C -0.171 4.171 17 C -0.125 4.125 18 C -0.166 4.166 19 C -0.118 4.118 20 O -0.583 6.583 21 Si 0.795 3.205 22 H -0.186 1.186 23 H -0.191 1.191 24 H -0.185 1.185 25 C -0.188 4.188 26 C -0.225 4.225 27 C -0.190 4.190 28 H 0.235 0.765 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.048 0.952 32 H 0.027 0.973 33 H 0.146 0.854 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.147 0.853 37 H 0.160 0.840 38 H 0.155 0.845 39 H 0.145 0.855 40 H 0.139 0.861 41 H 0.143 0.857 42 H 0.147 0.853 43 H 0.115 0.885 44 H 0.104 0.896 45 H 0.111 0.889 46 H 0.128 0.872 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 12.250 13.467 -1.016 18.234 hybrid contribution -0.097 0.030 0.728 0.735 sum 12.154 13.497 -0.288 18.165 Atomic orbital electron populations 1.90522 1.14488 1.86137 1.49508 1.22798 0.89212 0.84638 0.74723 1.46387 1.10578 1.04753 1.75998 1.22455 0.95903 0.82670 1.00150 1.21898 0.92501 0.91591 0.94118 1.94944 1.63334 1.65708 1.30173 1.33053 0.84725 0.90302 0.85354 1.21888 0.96011 1.00242 0.98967 1.21209 0.98760 0.98981 0.94231 1.21157 1.00226 0.95530 0.99942 1.21235 0.95359 0.98869 0.97055 1.21375 0.99698 1.00048 0.91868 1.33092 0.89828 0.85034 0.87269 1.21367 1.00457 0.95662 0.97725 1.21164 0.97667 0.97946 0.95431 1.21138 0.93142 1.01407 1.01405 1.21176 0.98917 0.95996 0.96454 1.21537 0.97885 0.99730 0.97441 1.24371 0.96742 0.91631 0.99090 1.94957 1.47616 1.35876 1.79901 0.85962 0.76639 0.79635 0.78246 1.18584 1.19109 1.18476 1.22921 1.02363 0.93298 1.00219 1.22925 0.94011 1.01603 1.03929 1.22770 0.99389 1.02821 0.94033 0.76524 0.92557 0.93044 0.95219 0.97300 0.85386 0.85845 0.86050 0.85268 0.84002 0.84453 0.85486 0.86062 0.85704 0.85280 0.88464 0.89587 0.88859 0.87215 0.90435 Number of geometries 1 Number of calculations of the screened coulomb radii 20 The total number of SCF iterations 1070. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -15.76 16.50 -14.35 -0.24 -16.00 16 2 C 0.50 12.89 5.99 -10.99 -0.07 12.82 16 3 N -0.72 -16.08 4.87 -60.30 -0.29 -16.38 16 4 C 0.11 2.38 6.06 -4.04 -0.02 2.35 16 5 C 0.08 1.65 5.04 37.16 0.19 1.84 16 6 O -0.60 -12.90 13.31 -35.23 -0.47 -13.37 16 7 C 0.07 1.08 9.45 -38.74 -0.37 0.71 16 8 C -0.15 -2.04 9.14 -39.25 -0.36 -2.40 16 9 C -0.11 -1.30 10.04 -39.62 -0.40 -1.70 16 10 C -0.15 -1.71 10.04 -39.48 -0.40 -2.11 16 11 C -0.11 -1.38 10.03 -39.63 -0.40 -1.78 16 12 C -0.11 -1.78 9.76 -39.26 -0.38 -2.17 16 13 C 0.05 0.76 7.20 -38.74 -0.28 0.48 16 14 C -0.13 -1.89 8.40 -39.25 -0.33 -2.22 16 15 C -0.10 -1.21 10.03 -39.62 -0.40 -1.60 16 16 C -0.15 -1.63 10.04 -39.48 -0.40 -2.03 16 17 C -0.11 -1.19 10.03 -39.63 -0.40 -1.58 16 18 C -0.15 -1.94 8.42 -39.26 -0.33 -2.27 16 19 C -0.02 -0.50 0.72 -27.89 -0.02 -0.52 16 20 O -0.64 -19.22 15.56 -55.14 -0.86 -20.08 16 21 Si 0.98 21.33 24.86 -169.99 -4.23 17.10 16 22 H -0.26 -5.34 6.67 56.52 0.38 -4.97 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.26 -5.05 7.10 56.52 0.40 -4.65 16 25 C -0.17 -3.56 4.67 -90.62 -0.42 -3.99 16 26 C -0.19 -3.45 9.25 -26.74 -0.25 -3.69 16 27 C -0.15 -3.06 9.87 -26.73 -0.26 -3.33 16 28 H 0.40 8.30 7.39 -40.82 -0.30 8.00 16 29 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 30 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.03 0.55 5.36 -51.93 -0.28 0.27 16 32 H 0.01 0.18 7.75 -51.93 -0.40 -0.22 16 33 H 0.13 1.56 6.42 -52.48 -0.34 1.22 16 34 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 36 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 37 H 0.14 2.48 7.80 -52.49 -0.41 2.07 16 38 H 0.14 1.96 6.46 -52.49 -0.34 1.62 16 39 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 40 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 41 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 42 H 0.13 1.59 7.91 -52.49 -0.42 1.17 16 43 H 0.10 1.85 7.64 -51.93 -0.40 1.46 16 44 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 45 H 0.09 1.79 6.97 -51.93 -0.36 1.43 16 46 H 0.11 2.49 7.03 -51.93 -0.36 2.12 16 47 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 401.79 15.07 6.05 6.05 Total: -1.00 -32.70 401.79 -11.97 -44.67 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -6.65 Total: 11.17 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: -5.29 Total: -13.18 kcal Atomic # 7 Polarization: -16.08 SS G_CDS: -0.29 Total: -16.38 kcal Atomic # 8 Polarization: -47.88 SS G_CDS: -1.56 Total: -49.45 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.23 Total: 17.10 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.70 -11.97 -44.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182670914.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.490 kcal (2) G-P(sol) polarization free energy of solvation -32.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 170.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 51.76 seconds