Wall clock time and date at job start Tue Mar 24 2020 14:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.21289 * 1 3 3 N 1.34776 * 120.00059 * 2 1 4 4 C 1.39952 * 119.99765 * 354.73719 * 3 2 1 5 5 C 1.39002 * 120.09041 * 146.90164 * 4 3 2 6 6 C 1.38211 * 120.48991 * 180.08958 * 5 4 3 7 7 C 1.38126 * 120.15238 * 359.91905 * 6 5 4 8 8 C 1.39500 * 119.44929 * 359.95472 * 7 6 5 9 9 C 1.38768 * 120.64951 * 359.88670 * 8 7 6 10 Xx 1.57617 * 118.34569 * 180.29603 * 8 7 6 11 10 O 1.42001 * 122.03382 * 171.36922 * 10 8 7 12 11 O 1.43351 * 115.93637 * 351.34417 * 10 8 7 13 12 C 1.43325 * 111.34291 * 41.24652 * 12 10 8 14 13 C 1.50458 * 120.26193 * 179.76295 * 7 6 5 15 14 C 1.50705 * 120.00059 * 180.02562 * 2 1 3 16 15 O 1.42902 * 109.46962 * 359.97438 * 15 2 1 17 16 Si 1.86302 * 109.47248 * 119.99931 * 15 2 1 18 17 H 1.48493 * 109.46747 * 179.97438 * 17 15 2 19 18 H 1.48492 * 109.46822 * 299.99776 * 17 15 2 20 19 H 1.48504 * 109.46834 * 59.99990 * 17 15 2 21 20 C 1.50707 * 109.46946 * 239.99936 * 15 2 1 22 21 C 1.38240 * 119.97188 * 94.99669 * 21 15 2 23 22 C 1.38195 * 120.02430 * 179.97438 * 22 21 15 24 23 C 1.38460 * 119.97356 * 0.02562 * 23 22 21 25 24 F 1.35107 * 120.02215 * 179.97438 * 24 23 22 26 25 C 1.38451 * 119.94921 * 0.25569 * 24 23 22 27 26 C 1.38198 * 119.97401 * 359.46854 * 26 24 23 28 27 H 0.97003 * 120.00137 * 174.73991 * 3 2 1 29 28 H 1.08009 * 119.75092 * 0.06710 * 5 4 3 30 29 H 1.08003 * 119.92640 * 179.90092 * 6 5 4 31 30 H 1.08005 * 120.28241 * 180.12276 * 9 8 7 32 31 H 0.96695 * 114.00140 * 179.97438 * 11 10 8 33 32 H 1.09004 * 109.32469 * 174.08807 * 13 12 10 34 33 H 1.08997 * 109.32471 * 54.62108 * 13 12 10 35 34 H 1.08999 * 109.14025 * 277.44629 * 14 7 6 36 35 H 1.08999 * 109.13372 * 36.62908 * 14 7 6 37 36 H 1.08002 * 119.98912 * 359.97438 * 22 21 15 38 37 H 1.08003 * 120.01762 * 180.02562 * 23 22 21 39 38 H 1.08005 * 120.01577 * 179.71871 * 26 24 23 40 39 H 1.07997 * 119.99155 * 180.27603 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.2129 0.0000 0.0000 3 7 1.8868 1.1672 0.0000 4 6 1.1914 2.3766 -0.1112 5 6 1.6637 3.5139 0.5337 6 6 0.9825 4.7121 0.4310 7 6 -0.1760 4.7897 -0.3171 8 6 -0.6502 3.6502 -0.9672 9 6 0.0313 2.4453 -0.8704 10 8 -2.4255 2.7161 -2.6557 11 8 -2.6847 5.0070 -1.6991 12 6 -1.7897 6.1263 -1.6812 13 6 -0.9223 6.0915 -0.4262 14 6 1.9664 -1.3051 -0.0006 15 8 1.0378 -2.3913 -0.0005 16 14 3.0375 -1.4032 -1.5218 17 1 3.7804 -2.6889 -1.5219 18 1 2.1837 -1.3241 -2.7341 19 1 4.0025 -0.2744 -1.5212 20 6 2.8329 -1.3855 1.2299 21 6 2.3693 -2.0330 2.3599 22 6 3.1631 -2.1077 3.4886 23 6 4.4229 -1.5333 3.4876 24 9 5.1996 -1.6054 4.5908 25 6 4.8838 -0.8801 2.3573 26 6 4.0905 -0.8115 1.2277 27 1 2.8538 1.1690 0.0770 28 1 2.5695 3.4606 1.1196 29 1 1.3568 5.5897 0.9371 30 1 -0.3402 1.5671 -1.3778 31 1 -3.2476 2.9133 -3.1250 32 1 -2.3676 7.0505 -1.6949 33 1 -1.1500 6.0908 -2.5630 34 1 -1.5579 6.2137 0.4508 35 1 -0.2058 6.9120 -0.4653 36 1 1.3864 -2.4806 2.3606 37 1 2.8010 -2.6140 4.3713 38 1 5.8646 -0.4277 2.3568 39 1 4.4515 -0.3058 0.3444 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001470821005.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 24 2020 14:16:14 Heat of formation + Delta-G solvation = 0.079615 kcal Electronic energy + Delta-G solvation = -27779.694218 eV Core-core repulsion = 23460.739436 eV Total energy + Delta-G solvation = -4318.954782 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 333.102 amu Computer time = 3.66 seconds Orbital eigenvalues (eV) -49.76914 -41.91874 -40.35645 -39.48812 -37.08936 -35.61291 -34.31808 -32.74764 -32.29528 -32.04994 -31.97730 -30.51096 -29.17628 -26.51551 -24.26685 -24.20101 -23.80099 -22.80673 -21.76109 -21.03082 -18.66504 -18.56886 -17.98938 -17.42556 -17.06441 -16.85946 -16.49320 -16.35616 -16.16556 -15.69905 -15.60234 -15.28282 -15.05510 -14.89845 -14.78144 -14.55828 -14.40854 -14.33601 -14.25237 -14.14825 -13.41876 -13.15425 -13.00820 -12.93212 -12.65580 -12.43527 -12.24599 -12.04334 -11.66325 -11.47156 -11.14484 -10.86427 -10.68271 -10.56540 -9.96662 -9.71793 -9.48117 -9.39470 -8.54250 -7.93585 -6.51161 -2.73379 -0.49249 -0.31426 0.23485 0.38855 1.13035 1.17705 1.41052 1.70580 1.93803 2.17368 2.43471 2.79346 2.97435 3.23849 3.36943 3.43296 3.64331 3.81547 3.90947 4.07002 4.07646 4.19126 4.25027 4.36981 4.43365 4.46734 4.53995 4.55710 4.58793 4.74141 4.82853 4.94582 4.97550 5.08137 5.12433 5.16859 5.23153 5.34717 5.42892 5.45389 5.85575 6.07540 6.30150 6.87431 7.12609 7.67459 Molecular weight = 333.10amu Principal moments of inertia in cm(-1) A = 0.015316 B = 0.003546 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.743146 B = 7894.900465 C = 8851.946139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.563 6.563 2 C 0.482 3.518 3 N -0.662 5.662 4 C 0.188 3.812 5 C -0.107 4.107 6 C -0.013 4.013 7 C -0.092 4.092 8 C 0.266 3.734 9 C -0.170 4.170 10 O -0.868 6.868 11 O -0.439 6.439 12 C 0.016 3.984 13 C -0.102 4.102 14 C -0.027 4.027 15 O -0.893 6.893 16 Si 0.952 3.048 17 H -0.267 1.267 18 H -0.319 1.319 19 H -0.177 1.177 20 C -0.097 4.097 21 C -0.088 4.088 22 C -0.154 4.154 23 C 0.074 3.926 24 F -0.142 7.142 25 C -0.124 4.124 26 C -0.121 4.121 27 H 0.434 0.566 28 H 0.217 0.783 29 H 0.250 0.750 30 H 0.117 0.883 31 H 0.300 0.700 32 H 0.182 0.818 33 H 0.092 0.908 34 H 0.111 0.889 35 H 0.165 0.835 36 H 0.091 0.909 37 H 0.140 0.860 38 H 0.181 0.819 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.656 23.868 8.435 30.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.439 6.439 2 C 0.275 3.725 3 N -0.315 5.315 4 C 0.091 3.909 5 C -0.126 4.126 6 C -0.030 4.030 7 C -0.093 4.093 8 C 0.257 3.743 9 C -0.191 4.191 10 O -0.693 6.693 11 O -0.383 6.383 12 C -0.066 4.066 13 C -0.138 4.138 14 C -0.126 4.126 15 O -0.838 6.838 16 Si 0.774 3.226 17 H -0.192 1.192 18 H -0.248 1.248 19 H -0.101 1.101 20 C -0.098 4.098 21 C -0.106 4.106 22 C -0.173 4.173 23 C 0.055 3.945 24 F -0.121 7.121 25 C -0.142 4.142 26 C -0.138 4.138 27 H 0.276 0.724 28 H 0.233 0.767 29 H 0.266 0.734 30 H 0.135 0.865 31 H 0.130 0.870 32 H 0.197 0.803 33 H 0.108 0.892 34 H 0.129 0.871 35 H 0.182 0.818 36 H 0.109 0.891 37 H 0.158 0.842 38 H 0.198 0.802 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 17.683 23.058 8.160 30.181 hybrid contribution -2.843 -1.756 -1.080 3.512 sum 14.840 21.301 7.079 26.909 Atomic orbital electron populations 1.90553 1.17529 1.87493 1.48276 1.24448 0.89351 0.86879 0.71868 1.44210 1.11870 1.02697 1.72707 1.17977 0.90527 0.89205 0.93210 1.22100 1.03818 0.89172 0.97559 1.21810 0.86772 1.00462 0.93916 1.21065 0.97187 0.94587 0.96469 1.29465 0.59559 0.95239 0.90034 1.21298 0.96897 0.98469 1.02414 1.93612 1.41307 1.60962 1.73375 1.95198 1.26870 1.22479 1.93790 1.23517 0.93214 0.92084 0.97759 1.21619 0.99332 0.92792 1.00075 1.23644 0.98317 0.89741 1.00937 1.95046 1.56134 1.39670 1.93001 0.86318 0.76932 0.82599 0.76737 1.19172 1.24810 1.10083 1.21141 0.95965 0.96637 0.96042 1.20772 0.99343 0.97924 0.92602 1.21216 0.94053 1.02717 0.99334 1.17697 0.89657 1.02584 0.84610 1.91465 1.74026 1.94967 1.51665 1.21345 1.02091 1.00178 0.90570 1.21297 0.92249 1.00429 0.99842 0.72373 0.76664 0.73387 0.86504 0.86973 0.80324 0.89155 0.87107 0.81762 0.89080 0.84211 0.80150 0.81676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 68. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -36.00 14.20 15.98 0.23 -35.78 16 2 C 0.48 24.67 5.74 87.66 0.50 25.18 16 3 N -0.66 -22.31 4.82 -303.42 -1.46 -23.77 16 4 C 0.19 5.47 6.28 38.17 0.24 5.71 16 5 C -0.11 -1.26 9.94 22.45 0.22 -1.04 16 6 C -0.01 -0.08 9.72 22.24 0.22 0.14 16 7 C -0.09 -1.56 5.79 -19.66 -0.11 -1.68 16 8 C 0.27 9.46 9.44 22.70 0.21 9.67 16 9 C -0.17 -6.97 8.47 22.54 0.19 -6.78 16 10 O -0.87 -55.16 17.84 -127.95 -2.28 -57.44 16 11 O -0.44 -17.42 14.34 -127.95 -1.83 -19.26 16 12 C 0.02 0.30 7.08 71.85 0.51 0.81 16 13 C -0.10 -0.97 5.95 29.64 0.18 -0.79 16 14 C -0.03 -1.43 0.72 29.11 0.02 -1.41 16 15 O -0.89 -64.83 16.04 -129.94 -2.08 -66.91 16 16 Si 0.95 41.58 24.29 68.60 1.67 43.24 16 17 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 18 H -0.32 -16.57 7.11 99.48 0.71 -15.86 16 19 H -0.18 -4.61 6.36 99.48 0.63 -3.98 16 20 C -0.10 -4.14 4.45 -19.86 -0.09 -4.23 16 21 C -0.09 -3.94 9.35 22.26 0.21 -3.73 16 22 C -0.15 -5.32 10.03 22.31 0.22 -5.10 16 23 C 0.07 2.09 7.30 22.37 0.16 2.26 16 24 F -0.14 -3.75 17.27 44.97 0.78 -2.97 16 25 C -0.12 -2.89 10.03 22.31 0.22 -2.67 16 26 C -0.12 -3.45 7.64 22.26 0.17 -3.28 16 27 H 0.43 9.95 6.62 -92.71 -0.61 9.34 16 28 H 0.22 0.25 8.06 -2.91 -0.02 0.23 16 29 H 0.25 -2.06 8.06 -2.91 -0.02 -2.09 16 30 H 0.12 6.59 6.39 -2.91 -0.02 6.58 16 31 H 0.30 17.75 9.26 -74.06 -0.69 17.06 16 32 H 0.18 1.88 8.14 -2.38 -0.02 1.86 16 33 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.16 -0.50 8.12 -2.39 -0.02 -0.52 16 36 H 0.09 4.93 7.35 -2.91 -0.02 4.91 16 37 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 38 H 0.18 2.45 8.06 -2.91 -0.02 2.42 16 39 H 0.17 3.37 5.14 -2.91 -0.01 3.35 16 Total: -1.00 -129.48 346.81 -1.39 -130.88 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.52 Total: 18.94 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: 3.08 Total: 13.06 kcal Atomic # 7 Polarization: -22.31 SS G_CDS: -1.46 Total: -23.77 kcal Atomic # 8 Polarization: -173.41 SS G_CDS: -5.97 Total: -179.38 kcal Atomic # 9 Polarization: -3.75 SS G_CDS: 0.78 Total: -2.97 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 1.67 Total: 43.24 kcal Total: -129.48 -1.39 -130.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001470821005.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.955 kcal (2) G-P(sol) polarization free energy of solvation -129.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -130.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.66 seconds