Wall clock time and date at job start Tue Mar 24 2020 18:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.21295 * 1 3 3 N 1.34777 * 120.00270 * 2 1 4 4 C 1.39954 * 119.99898 * 5.28175 * 3 2 1 5 5 C 1.38996 * 120.09100 * 213.18175 * 4 3 2 6 6 C 1.38218 * 120.49012 * 180.09578 * 5 4 3 7 7 C 1.38132 * 120.15177 * 359.97438 * 6 5 4 8 8 C 1.39430 * 119.39638 * 359.94206 * 7 6 5 9 9 C 1.38615 * 120.10350 * 33.33791 * 4 3 2 10 Xx 1.57620 * 118.32980 * 180.26182 * 8 7 6 11 10 O 1.41994 * 122.03574 * 171.38097 * 10 8 7 12 11 O 1.43363 * 115.92604 * 351.40105 * 10 8 7 13 12 C 1.43319 * 111.32177 * 41.26400 * 12 10 8 14 13 C 1.50453 * 120.26185 * 179.83107 * 7 6 5 15 14 C 1.50699 * 119.99517 * 180.02562 * 2 1 3 16 15 O 1.42901 * 109.47328 * 359.97438 * 15 2 1 17 16 Si 1.86299 * 109.47207 * 119.99759 * 15 2 1 18 17 H 1.48502 * 109.46774 * 59.99888 * 17 15 2 19 18 H 1.48496 * 109.47258 * 179.97438 * 17 15 2 20 19 H 1.48498 * 109.47210 * 300.00134 * 17 15 2 21 20 C 1.50696 * 109.47032 * 239.99744 * 15 2 1 22 21 C 1.38264 * 119.94698 * 274.72944 * 21 15 2 23 22 C 1.38147 * 120.05818 * 179.72296 * 22 21 15 24 23 C 1.38731 * 119.94156 * 0.57196 * 23 22 21 25 24 O 1.35900 * 120.05702 * 179.68668 * 24 23 22 26 25 C 1.38736 * 119.89104 * 359.69863 * 24 23 22 27 26 C 1.38144 * 119.94289 * 0.02562 * 26 24 23 28 27 H 0.96999 * 119.99921 * 185.28332 * 3 2 1 29 28 H 1.08000 * 119.75456 * 0.12194 * 5 4 3 30 29 H 1.07996 * 119.92158 * 180.02562 * 6 5 4 31 30 H 1.07994 * 120.23866 * 359.84616 * 9 4 3 32 31 H 0.96707 * 114.00082 * 180.02562 * 11 10 8 33 32 H 1.09002 * 109.32552 * 174.04138 * 13 12 10 34 33 H 1.09003 * 109.32916 * 54.57179 * 13 12 10 35 34 H 1.09001 * 109.13169 * 36.61455 * 14 7 6 36 35 H 1.08998 * 109.13712 * 277.44162 * 14 7 6 37 36 H 1.08001 * 119.96782 * 359.97438 * 22 21 15 38 37 H 1.07996 * 120.03182 * 180.25044 * 23 22 21 39 38 H 0.96711 * 113.99498 * 270.01879 * 25 24 23 40 39 H 1.08000 * 120.02850 * 179.97438 * 26 24 23 41 40 H 1.07993 * 119.97430 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.2129 0.0000 0.0000 3 7 1.8869 1.1672 0.0000 4 6 1.1916 2.3767 0.1116 5 6 1.6628 3.5135 -0.5346 6 6 0.9838 4.7127 -0.4284 7 6 -0.1727 4.7911 0.3229 8 6 -0.6471 3.6507 0.9700 9 6 0.0330 2.4452 0.8694 10 8 -2.6230 2.6270 2.3566 11 8 -2.4809 5.0941 2.0040 12 6 -2.3772 5.8678 0.8020 13 6 -0.9118 6.0960 0.4432 14 6 1.9663 -1.3052 -0.0006 15 8 1.0377 -2.3913 -0.0005 16 14 3.0373 -1.4033 -1.5218 17 1 4.0024 -0.2746 -1.5213 18 1 3.7802 -2.6891 -1.5221 19 1 2.1836 -1.3240 -2.7342 20 6 2.8327 -1.3856 1.2298 21 6 4.0928 -0.8163 1.2251 22 6 4.8867 -0.8837 2.3536 23 6 4.4234 -1.5335 3.4884 24 8 5.2050 -1.6067 4.5977 25 6 3.1610 -2.1088 3.4888 26 6 2.3686 -2.0337 2.3596 27 1 2.8538 1.1689 -0.0774 28 1 2.5659 3.4593 -1.1244 29 1 1.3578 5.5903 -0.9347 30 1 -0.3394 1.5662 1.3744 31 1 -3.4263 2.8319 2.8544 32 1 -2.8667 6.8305 0.9493 33 1 -2.8696 5.3365 -0.0126 34 1 -0.8551 6.6276 -0.5067 35 1 -0.4439 6.7013 1.2196 36 1 4.4550 -0.3151 0.3397 37 1 5.8692 -0.4354 2.3508 38 1 5.7768 -2.3863 4.6252 39 1 2.7982 -2.6156 4.3708 40 1 1.3860 -2.4817 2.3592 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001642024034.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 24 2020 18:02:36 Heat of formation + Delta-G solvation = -0.434021 kcal Electronic energy + Delta-G solvation = -27782.147727 eV Core-core repulsion = 23613.942456 eV Total energy + Delta-G solvation = -4168.205272 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.111 amu Computer time = 3.61 seconds Orbital eigenvalues (eV) -41.92882 -40.65642 -39.90319 -37.73263 -37.09727 -35.60293 -33.93045 -32.74564 -32.29605 -32.03332 -31.89790 -30.12539 -29.14992 -26.41404 -24.23375 -24.22531 -23.60124 -22.81196 -21.77112 -21.00230 -19.29794 -18.64037 -18.04609 -17.21662 -17.04145 -16.73684 -16.47151 -16.22351 -16.12370 -15.66884 -15.45863 -15.16419 -15.08249 -14.87345 -14.66235 -14.63678 -14.29689 -14.27032 -14.20327 -13.56802 -13.19239 -13.09506 -12.96958 -12.88729 -12.48408 -12.31099 -11.97155 -11.85009 -11.66271 -11.19368 -11.06420 -10.92941 -10.68694 -10.57329 -9.89327 -9.72237 -9.47924 -9.34296 -8.50973 -7.88662 -6.52788 -2.74200 -0.50515 -0.32268 0.31775 0.46176 1.17716 1.26814 1.47488 1.68236 2.00679 2.16426 2.50709 2.81130 2.95204 3.22105 3.36563 3.42385 3.63876 3.80528 4.00406 4.06315 4.14271 4.17719 4.31727 4.36951 4.41996 4.51705 4.54594 4.56746 4.70548 4.73630 4.82049 4.94135 4.96416 5.02212 5.12479 5.15508 5.31976 5.43033 5.45487 5.50108 5.89545 5.99423 6.31590 6.87038 6.92465 7.14689 7.72803 Molecular weight = 331.11amu Principal moments of inertia in cm(-1) A = 0.012856 B = 0.003793 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.397947 B = 7379.486604 C = 7858.640837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.566 6.566 2 C 0.481 3.519 3 N -0.662 5.662 4 C 0.188 3.812 5 C -0.108 4.108 6 C -0.012 4.012 7 C -0.092 4.092 8 C 0.267 3.733 9 C -0.169 4.169 10 O -0.873 6.873 11 O -0.435 6.435 12 C 0.014 3.986 13 C -0.100 4.100 14 C -0.043 4.043 15 O -0.900 6.900 16 Si 0.975 3.025 17 H -0.171 1.171 18 H -0.275 1.275 19 H -0.303 1.303 20 C -0.099 4.099 21 C -0.130 4.130 22 C -0.124 4.124 23 C 0.088 3.912 24 O -0.502 6.502 25 C -0.157 4.157 26 C -0.109 4.109 27 H 0.433 0.567 28 H 0.221 0.779 29 H 0.253 0.747 30 H 0.113 0.887 31 H 0.299 0.701 32 H 0.185 0.815 33 H 0.083 0.917 34 H 0.163 0.837 35 H 0.119 0.881 36 H 0.166 0.834 37 H 0.174 0.826 38 H 0.408 0.592 39 H 0.126 0.874 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.536 22.266 -6.714 29.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.442 6.442 2 C 0.273 3.727 3 N -0.315 5.315 4 C 0.091 3.909 5 C -0.127 4.127 6 C -0.029 4.029 7 C -0.093 4.093 8 C 0.257 3.743 9 C -0.190 4.190 10 O -0.698 6.698 11 O -0.380 6.380 12 C -0.068 4.068 13 C -0.136 4.136 14 C -0.141 4.141 15 O -0.846 6.846 16 Si 0.796 3.204 17 H -0.094 1.094 18 H -0.200 1.200 19 H -0.230 1.230 20 C -0.100 4.100 21 C -0.148 4.148 22 C -0.142 4.142 23 C 0.044 3.956 24 O -0.315 6.315 25 C -0.176 4.176 26 C -0.127 4.127 27 H 0.276 0.724 28 H 0.237 0.763 29 H 0.269 0.731 30 H 0.131 0.869 31 H 0.129 0.871 32 H 0.199 0.801 33 H 0.099 0.901 34 H 0.180 0.820 35 H 0.137 0.863 36 H 0.183 0.817 37 H 0.191 0.809 38 H 0.266 0.734 39 H 0.144 0.856 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 18.384 22.038 -7.400 29.638 hybrid contribution -2.946 -2.270 1.940 4.195 sum 15.438 19.768 -5.460 25.669 Atomic orbital electron populations 1.90552 1.17681 1.87578 1.48372 1.24581 0.89356 0.87020 0.71719 1.44218 1.11737 1.02752 1.72782 1.17953 0.90108 0.89344 0.93499 1.22159 1.03908 0.89073 0.97574 1.21843 0.86898 1.00381 0.93748 1.21088 0.97302 0.94412 0.96543 1.29458 0.62221 0.95210 0.87372 1.21239 0.96741 0.98359 1.02650 1.93635 1.43310 1.56067 1.76784 1.95183 1.87511 1.28485 1.26786 1.23516 0.97089 0.95923 0.90245 1.21608 0.92521 0.91547 1.07916 1.24008 0.98730 0.89417 1.01947 1.95027 1.56433 1.39822 1.93304 0.86000 0.76406 0.82436 0.75593 1.09438 1.20017 1.23048 1.21190 0.96120 0.96525 0.96192 1.21358 0.92413 1.00731 1.00274 1.21630 1.01606 1.00241 0.90735 1.18405 0.90301 0.99472 0.87415 1.84757 1.56957 1.50341 1.39419 1.21525 0.96014 1.02235 0.97826 1.20829 0.99034 0.99195 0.93654 0.72431 0.76268 0.73136 0.86902 0.87146 0.80070 0.90080 0.81979 0.86264 0.81706 0.80876 0.73355 0.85616 0.90586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 65. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -37.25 14.19 15.96 0.23 -37.02 16 2 C 0.48 25.35 5.74 87.66 0.50 25.86 16 3 N -0.66 -23.16 4.90 -303.57 -1.49 -24.64 16 4 C 0.19 5.69 6.28 38.12 0.24 5.93 16 5 C -0.11 -1.31 9.94 22.45 0.22 -1.09 16 6 C -0.01 -0.08 9.72 22.24 0.22 0.14 16 7 C -0.09 -1.63 5.79 -19.68 -0.11 -1.75 16 8 C 0.27 9.81 9.43 22.69 0.21 10.02 16 9 C -0.17 -7.22 8.47 22.49 0.19 -7.03 16 10 O -0.87 -57.55 17.85 -127.95 -2.28 -59.84 16 11 O -0.44 -17.59 14.34 -127.95 -1.83 -19.43 16 12 C 0.01 0.29 7.07 71.85 0.51 0.80 16 13 C -0.10 -0.99 5.95 29.63 0.18 -0.82 16 14 C -0.04 -2.37 0.72 29.10 0.02 -2.34 16 15 O -0.90 -67.07 16.03 -129.94 -2.08 -69.16 16 16 Si 0.98 40.03 24.12 68.60 1.65 41.69 16 17 H -0.17 -3.82 6.29 99.48 0.63 -3.20 16 18 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 19 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 20 C -0.10 -4.67 4.46 -19.85 -0.09 -4.76 16 21 C -0.13 -4.20 7.85 22.25 0.17 -4.03 16 22 C -0.12 -3.40 9.99 22.37 0.22 -3.17 16 23 C 0.09 2.82 6.70 22.51 0.15 2.97 16 24 O -0.50 -12.65 13.50 -92.42 -1.25 -13.90 16 25 C -0.16 -6.33 9.99 22.37 0.22 -6.11 16 26 C -0.11 -5.55 9.34 22.26 0.21 -5.34 16 27 H 0.43 10.42 6.57 -92.71 -0.61 9.81 16 28 H 0.22 0.16 8.06 -2.91 -0.02 0.14 16 29 H 0.25 -2.11 8.06 -2.91 -0.02 -2.13 16 30 H 0.11 6.66 6.38 -2.91 -0.02 6.64 16 31 H 0.30 18.27 9.26 -74.05 -0.69 17.59 16 32 H 0.18 2.08 8.14 -2.39 -0.02 2.07 16 33 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.16 -0.32 8.12 -2.39 -0.02 -0.34 16 35 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.17 3.71 5.13 -2.91 -0.01 3.70 16 37 H 0.17 3.02 8.06 -2.91 -0.02 3.00 16 38 H 0.41 5.86 9.06 -74.05 -0.67 5.19 16 39 H 0.13 4.64 8.06 -2.91 -0.02 4.62 16 40 H 0.08 4.68 7.34 -2.91 -0.02 4.66 16 Total: -1.00 -138.79 351.41 -4.14 -142.93 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: -0.15 Total: 30.09 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: 3.07 Total: 9.28 kcal Atomic # 7 Polarization: -23.16 SS G_CDS: -1.49 Total: -24.64 kcal Atomic # 8 Polarization: -192.12 SS G_CDS: -7.22 Total: -199.34 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 1.65 Total: 41.69 kcal Total: -138.79 -4.14 -142.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001642024034.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.498 kcal (2) G-P(sol) polarization free energy of solvation -138.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -142.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.61 seconds