Wall clock time and date at job start Tue Mar 24 2020 18:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46997 * 2 1 4 4 C 1.52994 * 109.46887 * 240.00109 * 2 1 3 5 5 N 1.46501 * 109.46835 * 120.00065 * 2 1 3 6 6 C 1.34946 * 126.03442 * 75.00519 * 5 2 1 7 7 C 1.35321 * 107.74379 * 179.97438 * 6 5 2 8 8 C 1.50692 * 126.03896 * 179.97438 * 7 6 5 9 9 O 1.42900 * 109.47715 * 335.00550 * 8 7 6 10 10 Si 1.86298 * 109.47345 * 215.00061 * 8 7 6 11 11 H 1.48499 * 109.47047 * 60.00228 * 10 8 7 12 12 H 1.48497 * 109.47413 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47290 * 300.00513 * 10 8 7 14 14 C 1.50702 * 109.46809 * 95.00585 * 8 7 6 15 15 O 1.21293 * 120.00049 * 239.99605 * 14 8 7 16 16 N 1.34770 * 120.00251 * 59.99657 * 14 8 7 17 17 C 1.39960 * 120.00160 * 174.73664 * 16 14 8 18 18 C 1.39003 * 120.00850 * 326.48616 * 17 16 14 19 19 C 1.38226 * 120.17417 * 179.71794 * 18 17 16 20 20 C 1.38043 * 120.19625 * 0.56347 * 19 18 17 21 21 C 1.39390 * 120.01967 * 359.71365 * 20 19 18 22 Xx 1.56998 * 120.08670 * 179.97438 * 21 20 19 23 22 O 1.41997 * 120.00050 * 180.02562 * 22 21 20 24 23 O 1.42003 * 120.00076 * 0.02687 * 22 21 20 25 24 C 1.38605 * 120.01162 * 146.76396 * 17 16 14 26 25 C 1.39871 * 107.91896 * 0.26315 * 7 6 5 27 26 N 1.30839 * 108.19989 * 359.55370 * 26 7 6 28 27 H 1.08997 * 109.47508 * 299.99790 * 1 2 3 29 28 H 1.09006 * 109.47354 * 59.99954 * 1 2 3 30 29 H 1.09008 * 109.47511 * 179.97438 * 1 2 3 31 30 H 1.08994 * 109.47370 * 180.02562 * 3 2 1 32 31 H 1.09001 * 109.47563 * 300.00301 * 3 2 1 33 32 H 1.09004 * 109.47060 * 60.00086 * 3 2 1 34 33 H 1.08999 * 109.47744 * 300.00431 * 4 2 1 35 34 H 1.09006 * 109.47563 * 60.00202 * 4 2 1 36 35 H 1.09003 * 109.46930 * 179.97438 * 4 2 1 37 36 H 1.07998 * 126.12781 * 359.97438 * 6 5 2 38 37 H 0.96997 * 119.99953 * 354.74026 * 16 14 8 39 38 H 1.08002 * 119.91033 * 359.97438 * 18 17 16 40 39 H 1.07996 * 119.90103 * 180.27719 * 19 18 17 41 40 H 1.07995 * 119.98717 * 179.74675 * 20 19 18 42 41 H 0.96705 * 114.00010 * 179.97438 * 23 22 21 43 42 H 0.96701 * 114.00135 * 180.02562 * 24 22 21 44 43 H 1.08003 * 120.10076 * 359.97438 * 25 17 16 45 44 H 1.07998 * 125.90148 * 179.73371 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2492 5 7 2.0183 -0.6906 1.1962 6 6 2.0167 -2.0248 1.3988 7 6 2.5490 -2.2570 2.6211 8 6 2.7424 -3.6070 3.2620 9 8 1.8052 -4.5346 2.7112 10 14 2.4704 -3.4668 5.0997 11 1 1.0890 -2.9883 5.3605 12 1 2.6616 -4.7970 5.7313 13 1 3.4444 -2.5030 5.6721 14 6 4.1443 -4.0925 2.9973 15 8 4.3232 -5.1307 2.3961 16 7 5.1992 -3.3732 3.4286 17 6 6.4968 -3.8765 3.2809 18 6 6.7264 -5.2444 3.3713 19 6 8.0056 -5.7457 3.2202 20 6 9.0640 -4.8899 2.9902 21 6 8.8440 -3.5162 2.9038 22 8 9.8205 -1.1422 2.5557 23 8 11.3607 -3.0588 2.4941 24 6 7.5542 -3.0105 3.0501 25 6 2.8819 -1.0220 3.1871 26 7 2.5698 -0.0828 2.3313 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6766 -1.7488 -1.2494 34 1 1.6766 -0.2074 -2.1393 35 1 3.1300 -0.7208 -1.2495 36 1 1.6553 -2.7732 0.7091 37 1 5.0592 -2.5067 3.8414 38 1 5.9023 -5.9177 3.5560 39 1 8.1783 -6.8097 3.2868 40 1 10.0627 -5.2849 2.8767 41 1 10.6206 -0.6238 2.3937 42 1 12.0342 -2.3828 2.3372 43 1 7.3786 -1.9469 2.9836 44 1 3.3233 -0.8701 4.1610 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584909945.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 24 2020 18:22:56 Heat of formation + Delta-G solvation = 97.689587 kcal Electronic energy + Delta-G solvation = -28999.175706 eV Core-core repulsion = 24812.895188 eV Total energy + Delta-G solvation = -4186.280519 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.149 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.26521 -41.64830 -39.65398 -37.70960 -35.90952 -34.01654 -33.16231 -32.58444 -32.25318 -31.51356 -30.98360 -30.05018 -28.38496 -28.24524 -26.43198 -24.08036 -23.77040 -23.10751 -21.60513 -20.46681 -20.14499 -18.67490 -17.98953 -17.59655 -17.40587 -16.55598 -16.22820 -15.91049 -15.71736 -15.61279 -15.43502 -15.14263 -15.04564 -14.99195 -14.81147 -14.52079 -14.31164 -13.78109 -13.73546 -13.56211 -13.19879 -13.19293 -13.12359 -13.05805 -12.77170 -12.36755 -12.23164 -12.17631 -11.96966 -11.84700 -11.81471 -11.34838 -11.28624 -11.18687 -11.07894 -10.67780 -10.18538 -10.17672 -9.63302 -9.16058 -8.34620 -7.72859 -6.55427 -2.95495 -0.55922 -0.37483 1.04311 1.29424 1.39162 1.51478 1.65528 1.70986 1.85113 2.14514 2.20907 2.62997 3.00492 3.33963 3.43351 3.49871 3.72258 3.77693 3.78680 3.89981 4.10462 4.13195 4.27470 4.51034 4.56210 4.58461 4.67993 4.69010 4.73211 4.77056 4.82106 4.84194 4.85987 4.86545 4.95547 5.03117 5.04982 5.20909 5.29281 5.43705 5.52559 5.87248 6.28981 6.30942 6.45116 6.63568 6.86380 7.17839 7.84169 Molecular weight = 335.15amu Principal moments of inertia in cm(-1) A = 0.010571 B = 0.003989 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2648.103413 B = 7017.268820 C = 8541.868805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.167 3.833 3 C -0.132 4.132 4 C -0.155 4.155 5 N -0.367 5.367 6 C 0.070 3.930 7 C -0.246 4.246 8 C 0.025 3.975 9 O -0.888 6.888 10 Si 0.960 3.040 11 H -0.286 1.286 12 H -0.292 1.292 13 H -0.216 1.216 14 C 0.497 3.503 15 O -0.545 6.545 16 N -0.668 5.668 17 C 0.206 3.794 18 C -0.123 4.123 19 C -0.011 4.011 20 C -0.115 4.115 21 C 0.348 3.652 22 O -0.749 6.749 23 O -0.727 6.727 24 C -0.155 4.155 25 C 0.019 3.981 26 N -0.304 5.304 27 H 0.054 0.946 28 H 0.109 0.891 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.102 0.898 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.113 0.887 35 H 0.052 0.948 36 H 0.151 0.849 37 H 0.423 0.577 38 H 0.160 0.840 39 H 0.228 0.772 40 H 0.194 0.806 41 H 0.331 0.669 42 H 0.334 0.666 43 H 0.173 0.827 44 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.945 4.524 -0.935 5.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.085 3.915 3 C -0.190 4.190 4 C -0.213 4.213 5 N -0.152 5.152 6 C -0.075 4.075 7 C -0.258 4.258 8 C -0.077 4.077 9 O -0.833 6.833 10 Si 0.783 3.217 11 H -0.212 1.212 12 H -0.218 1.218 13 H -0.141 1.141 14 C 0.290 3.710 15 O -0.420 6.420 16 N -0.318 5.318 17 C 0.108 3.892 18 C -0.143 4.143 19 C -0.028 4.028 20 C -0.133 4.133 21 C 0.341 3.659 22 O -0.580 6.580 23 O -0.559 6.559 24 C -0.175 4.175 25 C -0.166 4.166 26 N -0.126 5.126 27 H 0.073 0.927 28 H 0.128 0.872 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.121 0.879 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.131 0.869 35 H 0.071 0.929 36 H 0.168 0.832 37 H 0.262 0.738 38 H 0.177 0.823 39 H 0.244 0.756 40 H 0.211 0.789 41 H 0.165 0.835 42 H 0.169 0.831 43 H 0.190 0.810 44 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 1.318 4.058 -0.732 4.329 hybrid contribution 1.455 0.863 -0.530 1.772 sum 2.773 4.920 -1.261 5.787 Atomic orbital electron populations 1.22239 0.92225 1.02619 1.04064 1.21095 0.95171 0.94254 0.80981 1.21848 1.01232 0.92034 1.03847 1.22231 1.01459 1.00921 0.96719 1.49130 1.47930 1.03696 1.14423 1.21955 1.00955 0.85739 0.98863 1.21236 1.10791 0.96617 0.97180 1.22608 0.87571 0.90490 1.06986 1.95005 1.51910 1.56191 1.80195 0.86064 0.80709 0.78419 0.76478 1.21176 1.21805 1.14053 1.24566 0.88052 0.83623 0.74797 1.90438 1.85798 1.25961 1.39841 1.44544 1.02107 1.24282 1.60907 1.17685 0.83302 0.91379 0.96807 1.22053 1.00002 0.93706 0.98540 1.21679 0.85891 1.00657 0.94570 1.22102 1.04575 0.84637 1.01972 1.28472 0.59594 0.70464 1.07389 1.93510 1.28844 1.37812 1.97800 1.93475 1.33822 1.30715 1.97861 1.21235 0.85790 1.04700 1.05786 1.24127 1.02074 0.89916 1.00523 1.77025 1.18503 1.22286 0.94747 0.92730 0.87198 0.93247 0.92996 0.87904 0.92074 0.92825 0.86893 0.92894 0.83203 0.73793 0.82259 0.75589 0.78921 0.83497 0.83139 0.80986 0.77799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 8.73 71.98 0.63 -2.93 16 2 C 0.17 4.41 1.24 3.60 0.00 4.42 16 3 C -0.13 -2.91 8.09 71.98 0.58 -2.33 16 4 C -0.16 -3.65 8.29 71.98 0.60 -3.05 16 5 N -0.37 -13.28 3.43 -307.84 -1.06 -14.33 16 6 C 0.07 3.09 10.02 83.54 0.84 3.93 16 7 C -0.25 -11.04 4.40 -20.14 -0.09 -11.13 16 8 C 0.03 1.28 0.78 29.10 0.02 1.30 16 9 O -0.89 -58.92 16.76 -129.94 -2.18 -61.10 16 10 Si 0.96 40.45 24.77 68.60 1.70 42.15 16 11 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 12 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 13 H -0.22 -6.39 6.83 99.48 0.68 -5.71 16 14 C 0.50 22.67 5.73 87.66 0.50 23.17 16 15 O -0.55 -28.18 14.19 15.96 0.23 -27.95 16 16 N -0.67 -22.67 4.81 -303.58 -1.46 -24.14 16 17 C 0.21 5.90 6.27 38.11 0.24 6.13 16 18 C -0.12 -3.02 8.65 22.45 0.19 -2.82 16 19 C -0.01 -0.16 10.03 22.22 0.22 0.06 16 20 C -0.11 -2.19 9.75 22.50 0.22 -1.97 16 21 C 0.35 9.78 9.79 22.81 0.22 10.01 16 22 O -0.75 -31.95 17.24 -127.47 -2.20 -34.15 16 23 O -0.73 -28.52 17.24 -127.47 -2.20 -30.72 16 24 C -0.15 -4.27 9.67 22.62 0.22 -4.05 16 25 C 0.02 0.69 9.88 85.24 0.84 1.54 16 26 N -0.30 -11.17 11.66 -57.02 -0.66 -11.84 16 27 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.11 1.69 8.14 -2.38 -0.02 1.67 16 29 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 30 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.06 1.46 8.04 -2.38 -0.02 1.44 16 33 H 0.05 1.41 7.37 -2.39 -0.02 1.40 16 34 H 0.11 1.77 8.14 -2.38 -0.02 1.75 16 35 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.15 7.05 7.54 -2.91 -0.02 7.03 16 37 H 0.42 12.20 7.32 -92.71 -0.68 11.52 16 38 H 0.16 4.55 6.42 -2.91 -0.02 4.53 16 39 H 0.23 1.20 8.06 -2.91 -0.02 1.17 16 40 H 0.19 3.11 7.77 -2.91 -0.02 3.09 16 41 H 0.33 12.26 8.90 -74.05 -0.66 11.60 16 42 H 0.33 11.48 8.90 -74.06 -0.66 10.82 16 43 H 0.17 4.93 7.77 -2.91 -0.02 4.91 16 44 H 0.21 5.84 6.98 -2.91 -0.02 5.82 16 Total: -1.00 -93.75 384.53 -2.79 -96.54 By element: Atomic # 1 Polarization: 43.46 SS G_CDS: -0.21 Total: 43.26 kcal Atomic # 6 Polarization: 17.04 SS G_CDS: 5.24 Total: 22.28 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: -3.18 Total: -50.31 kcal Atomic # 8 Polarization: -147.57 SS G_CDS: -6.35 Total: -153.92 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 1.70 Total: 42.15 kcal Total: -93.75 -2.79 -96.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584909945.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.230 kcal (2) G-P(sol) polarization free energy of solvation -93.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds