Wall clock time and date at job start Tue Mar 24 2020 18:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.47073 * 2 1 4 4 C 1.52993 * 109.47155 * 239.99813 * 2 1 3 5 5 N 1.46504 * 109.47136 * 119.99538 * 2 1 3 6 6 C 1.34951 * 126.03271 * 76.85730 * 5 2 1 7 7 C 1.35307 * 107.74512 * 180.02562 * 6 5 2 8 8 C 1.50700 * 126.04267 * 180.02562 * 7 6 5 9 9 O 1.42905 * 109.47491 * 213.41648 * 8 7 6 10 10 Si 1.86302 * 109.46964 * 333.41335 * 8 7 6 11 11 H 1.48498 * 109.47153 * 171.03799 * 10 8 7 12 12 H 1.48501 * 109.46937 * 291.03994 * 10 8 7 13 13 H 1.48503 * 109.47149 * 51.03835 * 10 8 7 14 14 C 1.50698 * 109.47425 * 93.41100 * 8 7 6 15 15 O 1.21282 * 120.00259 * 139.60525 * 14 8 7 16 16 N 1.34775 * 120.00004 * 319.61020 * 14 8 7 17 17 C 1.46502 * 120.00074 * 158.98140 * 16 14 8 18 18 C 1.52993 * 117.49769 * 13.82391 * 17 16 14 19 19 C 1.52995 * 117.50065 * 305.16347 * 17 16 14 20 20 C 1.46504 * 119.99920 * 338.98168 * 16 14 8 21 21 H 1.08997 * 110.64489 * 198.05823 * 20 16 14 22 22 C 1.09749 * 113.89359 * 32.13219 * 13 10 8 23 23 C 1.45570 * 129.86621 * 305.26300 * 13 10 8 24 24 N 1.47906 * 142.56051 * 61.24568 * 23 13 10 25 25 C 1.46487 * 93.54137 * 81.08818 * 6 5 2 26 26 C 1.39869 * 107.92067 * 0.26168 * 7 6 5 27 27 N 1.30841 * 108.20345 * 359.55566 * 26 7 6 28 28 H 1.08997 * 109.47179 * 300.00257 * 1 2 3 29 29 H 1.09002 * 109.47133 * 60.00028 * 1 2 3 30 30 H 1.08991 * 109.46910 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47065 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.46670 * 299.99900 * 3 2 1 33 33 H 1.08994 * 109.46851 * 59.99966 * 3 2 1 34 34 H 1.08996 * 109.47585 * 302.37630 * 4 2 1 35 35 H 1.09001 * 109.47130 * 62.38230 * 4 2 1 36 36 H 1.09003 * 109.47364 * 182.37599 * 4 2 1 37 37 H 1.04039 * 107.66556 * 24.81990 * 23 13 10 38 38 H 1.09000 * 115.54880 * 159.48980 * 17 16 14 39 39 H 1.09003 * 117.50317 * 359.97438 * 18 17 16 40 40 H 1.09002 * 117.50180 * 145.02133 * 18 17 16 41 41 H 1.09003 * 117.49643 * 214.98492 * 19 17 16 42 42 H 1.09003 * 117.49645 * 359.97438 * 19 17 16 43 43 H 1.02366 * 54.27819 * 49.04045 * 13 10 8 44 44 H 1.08999 * 98.09284 * 124.70504 * 22 13 10 45 45 H 1.08995 * 73.54238 * 319.79702 * 23 13 10 46 46 H 1.09003 * 102.97050 * 212.39251 * 23 13 10 47 47 H 0.82724 * 108.77696 * 246.07581 * 34 4 2 48 48 H 1.09001 * 132.33917 * 6.09693 * 25 6 5 49 49 H 1.03371 * 86.69710 * 128.62819 * 6 5 2 50 50 H 1.08002 * 125.90076 * 179.73581 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6905 1.1963 6 6 2.0490 -2.0264 1.3848 7 6 2.5678 -2.2578 2.6129 8 6 2.7878 -3.6093 3.2423 9 8 2.5897 -3.5151 4.6544 10 14 1.5786 -4.8322 2.5258 11 1 1.9320 -6.2014 2.9793 12 1 0.2062 -4.4977 2.9840 13 1 1.6338 -4.7722 1.0430 14 6 4.1946 -4.0710 2.9621 15 8 4.8334 -4.6299 3.8284 16 7 4.7431 -3.8627 1.7487 17 6 6.1997 -3.8722 1.5918 18 6 7.0308 -4.4358 2.7461 19 6 7.0122 -2.9284 2.4806 20 6 3.8828 -3.6267 0.5866 21 1 4.4334 -3.7928 -0.3392 22 6 2.6263 -4.5254 0.6448 23 6 1.4718 -3.6353 0.1485 24 7 2.0553 -2.3211 -0.1980 25 6 3.2876 -2.1971 0.6215 26 6 2.8587 -1.0208 3.1972 27 7 2.5354 -0.0807 2.3465 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6423 -1.7359 -1.2708 35 1 1.7119 -0.1834 -2.1387 36 1 3.1292 -0.7583 -1.2281 37 1 1.7188 -2.7765 0.6814 38 1 6.5623 -4.0463 0.5787 39 1 6.4940 -4.7991 3.6225 40 1 7.9405 -4.9802 2.4925 41 1 7.9095 -2.4817 2.0522 42 1 6.4629 -2.3001 3.1818 43 1 2.4404 -4.8502 1.6685 44 1 2.7475 -5.3880 -0.0105 45 1 0.7296 -3.5155 0.9377 46 1 1.0116 -4.0813 -0.7332 47 1 2.2685 -2.2692 -1.1826 48 1 3.9776 -1.4827 0.1725 49 1 3.0428 -1.9070 1.6432 50 1 3.2804 -0.8680 4.1797 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000435246987.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 24 2020 18:58:46 Heat of formation + Delta-G solvation = 1139.383746 kcal Electronic energy + Delta-G solvation = -35097.524676 eV Core-core repulsion = 31176.311423 eV Total energy + Delta-G solvation = -3921.213253 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 11.62 seconds Orbital eigenvalues (eV) -50.16910 -40.34627 -39.37530 -37.41914 -35.49609 -34.33152 -32.93203 -31.27354 -30.64353 -28.71756 -28.18844 -27.44608 -26.92495 -24.34937 -22.68800 -22.11493 -21.77956 -21.45178 -21.20367 -20.75580 -18.84355 -18.54554 -17.11449 -16.25855 -16.08295 -15.53491 -15.11869 -14.86831 -14.50264 -14.18783 -13.89767 -13.74198 -13.68583 -13.16315 -12.99563 -12.86625 -12.49013 -12.32404 -12.11818 -11.92446 -11.81480 -11.71625 -11.68432 -11.45041 -11.15381 -11.03296 -10.75719 -10.62741 -10.57083 -10.40129 -9.92959 -9.89318 -9.82440 -9.51170 -8.99236 -8.66674 -8.27769 -7.84421 -7.55401 -7.52268 -6.56137 -5.80625 -5.45798 -5.01429 2.06587 2.91043 3.40317 3.45417 3.56170 3.62754 3.68056 3.91398 4.02520 4.12095 4.34561 4.51480 4.55338 4.76919 4.86976 4.91494 5.01949 5.15886 5.21035 5.24460 5.27547 5.33930 5.36280 5.44175 5.47838 5.60435 5.62230 5.66968 5.71009 5.80181 5.85057 5.92546 5.96671 6.01130 6.05539 6.12288 6.14207 6.17726 6.21325 6.41215 6.57852 6.58263 6.71775 6.88120 6.98082 7.06799 7.23920 7.50649 7.64178 7.96382 8.14316 8.45612 9.12460 9.55768 10.29290 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015004 B = 0.007249 C = 0.006693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.757442 B = 3861.628377 C = 4182.256831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.229 3.771 3 C -0.138 4.138 4 C -0.252 4.252 5 N -0.502 5.502 6 C 0.182 3.818 7 C -0.555 4.555 8 C 0.124 3.876 9 O -0.806 6.806 10 Si 0.454 3.546 11 H -0.276 1.276 12 H -0.283 1.283 13 H 0.057 0.943 14 C 0.500 3.500 15 O -0.527 6.527 16 N -0.588 5.588 17 C 0.070 3.930 18 C -0.208 4.208 19 C -0.201 4.201 20 C 0.165 3.835 21 H 0.097 0.903 22 C -0.101 4.101 23 C -0.086 4.086 24 N -0.547 5.547 25 C -0.326 4.326 26 C 0.143 3.857 27 N -0.398 5.398 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.207 0.793 35 H 0.047 0.953 36 H 0.053 0.947 37 H 0.350 0.650 38 H 0.111 0.889 39 H 0.157 0.843 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.013 0.987 44 H 0.109 0.891 45 H 0.140 0.860 46 H 0.123 0.877 47 H 0.265 0.735 48 H 0.140 0.860 49 H 0.456 0.544 50 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.078 2.553 -21.317 21.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.144 3.856 3 C -0.196 4.196 4 C -0.310 4.310 5 N -0.301 5.301 6 C 0.059 3.941 7 C -0.569 4.569 8 C 0.022 3.978 9 O -0.748 6.748 10 Si 0.305 3.695 11 H -0.205 1.205 12 H -0.212 1.212 13 H 0.109 0.891 14 C 0.295 3.705 15 O -0.403 6.403 16 N -0.324 5.324 17 C -0.035 4.035 18 C -0.245 4.245 19 C -0.240 4.240 20 C 0.057 3.943 21 H 0.115 0.885 22 C -0.138 4.138 23 C -0.201 4.201 24 N -0.220 5.220 25 C -0.438 4.438 26 C -0.047 4.047 27 N -0.212 5.212 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.220 0.780 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.356 0.644 38 H 0.129 0.871 39 H 0.174 0.826 40 H 0.096 0.904 41 H 0.105 0.895 42 H 0.111 0.889 43 H 0.030 0.970 44 H 0.127 0.873 45 H 0.157 0.843 46 H 0.141 0.859 47 H 0.123 0.877 48 H 0.157 0.843 49 H 0.460 0.540 50 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -0.842 3.317 -20.790 21.070 hybrid contribution 1.340 -0.888 1.187 1.999 sum 0.498 2.428 -19.603 19.759 Atomic orbital electron populations 1.22255 0.95716 1.02226 1.01405 1.19505 0.92317 0.90879 0.82896 1.21836 1.01290 0.95090 1.01357 1.25434 1.02102 1.07223 0.96265 1.49753 1.63160 1.02484 1.14749 1.23663 0.75951 0.97888 0.96588 1.20820 1.32471 1.00744 1.02886 1.21188 0.86740 0.90624 0.99247 1.94994 1.85907 1.89515 1.04414 0.98346 0.86076 0.84425 1.00658 1.20459 1.21209 0.89134 1.24865 0.92421 0.74900 0.78295 1.90071 1.62903 1.40902 1.46402 1.47740 1.02556 1.73914 1.08213 1.21502 0.81099 1.05312 0.95560 1.24541 1.00923 0.95560 1.03476 1.23307 1.01918 0.94254 1.04554 1.22058 0.90231 0.91860 0.90164 0.88505 1.19875 0.91599 1.00758 1.01613 1.23730 1.01193 0.88749 1.06395 1.75722 1.22544 1.18085 1.05673 1.31319 0.93944 1.01833 1.16709 1.23832 0.93075 0.90681 0.97144 1.77170 1.25656 1.21674 0.96748 0.92635 0.92510 0.92072 0.92769 0.92818 0.91812 0.78006 0.93478 0.92799 0.64432 0.87094 0.82598 0.90403 0.89503 0.88891 0.97044 0.87289 0.84287 0.85901 0.87747 0.84286 0.54049 0.81964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 163. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 8.74 37.16 0.32 -1.64 16 2 C 0.23 3.10 1.07 -131.82 -0.14 2.96 16 3 C -0.14 -1.89 8.11 37.16 0.30 -1.58 16 4 C -0.25 -2.36 6.21 30.14 0.19 -2.17 16 5 N -0.50 -9.07 2.39 -368.43 -0.88 -9.95 16 6 C 0.18 3.39 3.50 -194.39 -0.68 2.71 16 7 C -0.55 -13.82 3.14 -105.06 -0.33 -14.15 16 8 C 0.12 3.64 0.76 -29.04 -0.02 3.62 16 9 O -0.81 -30.76 16.97 -54.33 -0.92 -31.68 16 10 Si 0.45 11.37 20.57 -169.99 -3.50 7.88 16 11 H -0.28 -8.01 7.11 56.52 0.40 -7.61 16 12 H -0.28 -8.04 7.11 56.52 0.40 -7.63 16 13 H 0.06 0.87 0.80 -126.70 -0.10 0.77 16 14 C 0.50 13.61 5.35 -10.99 -0.06 13.55 16 15 O -0.53 -16.24 13.08 -13.54 -0.18 -16.42 16 16 N -0.59 -11.88 2.86 -156.53 -0.45 -12.33 16 17 C 0.07 1.25 6.60 -67.94 -0.45 0.80 16 18 C -0.21 -4.01 9.62 -26.70 -0.26 -4.27 16 19 C -0.20 -3.69 10.16 -26.70 -0.27 -3.96 16 20 C 0.17 2.44 3.53 -66.10 -0.23 2.21 16 21 H 0.10 0.99 7.96 -51.93 -0.41 0.58 16 22 C -0.10 -1.41 3.85 -25.37 -0.10 -1.51 16 23 C -0.09 -0.92 5.47 -2.76 -0.02 -0.93 16 24 N -0.55 -5.93 1.12 ******* -1.15 -7.07 16 25 C -0.33 -5.02 3.43 -73.21 -0.25 -5.27 16 26 C 0.14 3.67 11.37 -17.36 -0.20 3.47 16 27 N -0.40 -8.94 11.60 30.45 0.35 -8.58 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 1.00 8.03 -51.93 -0.42 0.58 16 34 H 0.21 1.49 3.20 -132.05 -0.42 1.07 16 35 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.05 0.53 6.00 -51.93 -0.31 0.22 16 37 H 0.35 5.03 0.00 0.00 0.00 5.03 16 38 H 0.11 1.50 8.05 -51.93 -0.42 1.08 16 39 H 0.16 3.77 4.66 -54.51 -0.25 3.51 16 40 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.09 2.02 8.14 -51.93 -0.42 1.60 16 43 H 0.01 0.26 0.02 -51.93 0.00 0.26 16 44 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.14 1.95 4.23 -51.93 -0.22 1.73 16 46 H 0.12 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.27 1.82 4.55 -95.23 -0.43 1.38 16 48 H 0.14 2.08 6.64 -51.93 -0.34 1.74 16 49 H 0.46 9.10 0.17 -343.55 -0.06 9.04 16 50 H 0.16 4.42 8.06 -52.49 -0.42 4.00 16 LS Contribution 325.63 15.07 4.91 4.91 Total: -1.00 -46.79 325.63 -11.66 -58.45 By element: Atomic # 1 Polarization: 28.62 SS G_CDS: -7.67 Total: 20.96 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: -2.19 Total: -6.16 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: -2.12 Total: -37.93 kcal Atomic # 8 Polarization: -47.00 SS G_CDS: -1.10 Total: -48.10 kcal Atomic # 14 Polarization: 11.37 SS G_CDS: -3.50 Total: 7.88 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -46.79 -11.66 -58.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435246987.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1197.836 kcal (2) G-P(sol) polarization free energy of solvation -46.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1151.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 1139.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.62 seconds