Wall clock time and date at job start Tue Mar 24 2020 18:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.47073 * 2 1 4 4 C 1.52993 * 109.47155 * 239.99813 * 2 1 3 5 5 N 1.46504 * 109.47136 * 119.99538 * 2 1 3 6 6 C 1.34951 * 126.03271 * 76.85730 * 5 2 1 7 7 C 1.35307 * 107.74512 * 180.02562 * 6 5 2 8 8 C 1.50700 * 126.04267 * 180.02562 * 7 6 5 9 9 O 1.42905 * 109.47491 * 213.41648 * 8 7 6 10 10 Si 1.86302 * 109.46964 * 333.41335 * 8 7 6 11 11 H 1.48498 * 109.47153 * 171.03799 * 10 8 7 12 12 H 1.48501 * 109.46937 * 291.03994 * 10 8 7 13 13 H 1.48503 * 109.47149 * 51.03835 * 10 8 7 14 14 C 1.50698 * 109.47425 * 93.41100 * 8 7 6 15 15 O 1.21282 * 120.00259 * 139.60525 * 14 8 7 16 16 N 1.34775 * 120.00004 * 319.61020 * 14 8 7 17 17 C 1.46502 * 120.00074 * 158.98140 * 16 14 8 18 18 C 1.52993 * 117.49769 * 13.82391 * 17 16 14 19 19 C 1.52995 * 117.50065 * 305.16347 * 17 16 14 20 20 C 1.46504 * 119.99920 * 338.98168 * 16 14 8 21 21 H 1.08997 * 110.64489 * 198.05823 * 20 16 14 22 22 C 1.09749 * 113.89359 * 32.13219 * 13 10 8 23 23 C 1.45570 * 129.86621 * 305.26300 * 13 10 8 24 24 N 1.47906 * 142.56051 * 61.24568 * 23 13 10 25 25 C 1.46487 * 93.54137 * 81.08818 * 6 5 2 26 26 C 1.39869 * 107.92067 * 0.26168 * 7 6 5 27 27 N 1.30841 * 108.20345 * 359.55566 * 26 7 6 28 28 H 1.08997 * 109.47179 * 300.00257 * 1 2 3 29 29 H 1.09002 * 109.47133 * 60.00028 * 1 2 3 30 30 H 1.08991 * 109.46910 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47065 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.46670 * 299.99900 * 3 2 1 33 33 H 1.08994 * 109.46851 * 59.99966 * 3 2 1 34 34 H 1.08996 * 109.47585 * 302.37630 * 4 2 1 35 35 H 1.09001 * 109.47130 * 62.38230 * 4 2 1 36 36 H 1.09003 * 109.47364 * 182.37599 * 4 2 1 37 37 H 1.04039 * 107.66556 * 24.81990 * 23 13 10 38 38 H 1.09000 * 115.54880 * 159.48980 * 17 16 14 39 39 H 1.09003 * 117.50317 * 359.97438 * 18 17 16 40 40 H 1.09002 * 117.50180 * 145.02133 * 18 17 16 41 41 H 1.09003 * 117.49643 * 214.98492 * 19 17 16 42 42 H 1.09003 * 117.49645 * 359.97438 * 19 17 16 43 43 H 1.02366 * 54.27819 * 49.04045 * 13 10 8 44 44 H 1.08999 * 98.09284 * 124.70504 * 22 13 10 45 45 H 1.08995 * 73.54238 * 319.79702 * 23 13 10 46 46 H 1.09003 * 102.97050 * 212.39251 * 23 13 10 47 47 H 0.82724 * 108.77696 * 246.07581 * 34 4 2 48 48 H 1.09001 * 132.33917 * 6.09693 * 25 6 5 49 49 H 1.03371 * 86.69710 * 128.62819 * 6 5 2 50 50 H 1.08002 * 125.90076 * 179.73581 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6905 1.1963 6 6 2.0490 -2.0264 1.3848 7 6 2.5678 -2.2578 2.6129 8 6 2.7878 -3.6093 3.2423 9 8 2.5897 -3.5151 4.6544 10 14 1.5786 -4.8322 2.5258 11 1 1.9320 -6.2014 2.9793 12 1 0.2062 -4.4977 2.9840 13 1 1.6338 -4.7722 1.0430 14 6 4.1946 -4.0710 2.9621 15 8 4.8334 -4.6299 3.8284 16 7 4.7431 -3.8627 1.7487 17 6 6.1997 -3.8722 1.5918 18 6 7.0308 -4.4358 2.7461 19 6 7.0122 -2.9284 2.4806 20 6 3.8828 -3.6267 0.5866 21 1 4.4334 -3.7928 -0.3392 22 6 2.6263 -4.5254 0.6448 23 6 1.4718 -3.6353 0.1485 24 7 2.0553 -2.3211 -0.1980 25 6 3.2876 -2.1971 0.6215 26 6 2.8587 -1.0208 3.1972 27 7 2.5354 -0.0807 2.3465 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6423 -1.7359 -1.2708 35 1 1.7119 -0.1834 -2.1387 36 1 3.1292 -0.7583 -1.2281 37 1 1.7188 -2.7765 0.6814 38 1 6.5623 -4.0463 0.5787 39 1 6.4940 -4.7991 3.6225 40 1 7.9405 -4.9802 2.4925 41 1 7.9095 -2.4817 2.0522 42 1 6.4629 -2.3001 3.1818 43 1 2.4404 -4.8502 1.6685 44 1 2.7475 -5.3880 -0.0105 45 1 0.7296 -3.5155 0.9377 46 1 1.0116 -4.0813 -0.7332 47 1 2.2685 -2.2692 -1.1826 48 1 3.9776 -1.4827 0.1725 49 1 3.0428 -1.9070 1.6432 50 1 3.2804 -0.8680 4.1797 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000435246987.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 24 2020 18:58:44 Heat of formation + Delta-G solvation = 1076.976784 kcal Electronic energy + Delta-G solvation = -35100.230845 eV Core-core repulsion = 31176.311423 eV Total energy + Delta-G solvation = -3923.919422 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 2.43 seconds Orbital eigenvalues (eV) -51.50120 -41.78732 -41.11960 -38.62393 -37.30077 -35.71886 -34.43978 -33.30661 -32.06352 -30.29927 -29.69068 -28.75948 -27.93190 -26.16238 -24.17987 -23.36725 -23.20141 -22.92050 -22.74702 -22.03569 -20.40893 -20.05110 -18.45993 -17.69815 -17.44811 -16.99618 -16.60365 -16.30580 -15.95904 -15.72224 -15.08516 -15.00497 -14.88238 -14.68577 -14.55369 -14.31765 -14.08183 -13.85246 -13.58431 -13.36397 -13.21846 -12.96856 -12.82001 -12.70057 -12.64417 -12.41214 -12.37359 -12.01670 -11.91730 -11.69375 -11.68050 -11.60423 -11.25481 -11.17507 -10.69612 -10.37902 -9.76641 -9.49505 -9.11202 -8.91225 -8.75840 -8.29382 -7.55910 -6.89888 0.61108 1.21757 1.48113 1.53634 1.75158 1.93995 2.15282 2.35276 2.66530 2.81115 2.95075 3.16595 3.20111 3.47345 3.49526 3.70113 3.79222 3.87846 3.95632 4.06425 4.08927 4.17575 4.24427 4.31425 4.47194 4.53110 4.53919 4.65936 4.71102 4.74185 4.75856 4.83286 4.93038 4.93541 4.99107 5.02338 5.06774 5.13698 5.16169 5.26467 5.31016 5.36308 5.42649 5.54919 5.66459 5.71741 5.78276 6.00286 6.18611 6.27404 6.63065 6.89888 7.43581 7.55896 8.19144 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015004 B = 0.007249 C = 0.006693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.757442 B = 3861.628377 C = 4182.256831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.208 3.792 3 C -0.141 4.141 4 C -0.242 4.242 5 N -0.497 5.497 6 C 0.136 3.864 7 C -0.629 4.629 8 C 0.092 3.908 9 O -0.969 6.969 10 Si -0.086 4.086 11 H -0.364 1.364 12 H -0.350 1.350 13 H 0.515 0.485 14 C 0.488 3.512 15 O -0.599 6.599 16 N -0.583 5.583 17 C 0.097 3.903 18 C -0.240 4.240 19 C -0.208 4.208 20 C 0.202 3.798 21 H 0.231 0.769 22 C -0.288 4.288 23 C -0.097 4.097 24 N -0.514 5.514 25 C -0.301 4.301 26 C 0.081 3.919 27 N -0.409 5.409 28 H 0.001 0.999 29 H 0.101 0.899 30 H 0.083 0.917 31 H 0.046 0.954 32 H 0.096 0.904 33 H 0.015 0.985 34 H 0.238 0.762 35 H 0.102 0.898 36 H 0.076 0.924 37 H 0.408 0.592 38 H 0.212 0.788 39 H 0.085 0.915 40 H 0.124 0.876 41 H 0.140 0.860 42 H 0.024 0.976 43 H 0.134 0.866 44 H 0.255 0.745 45 H 0.130 0.870 46 H 0.283 0.717 47 H 0.358 0.642 48 H 0.184 0.816 49 H 0.456 0.544 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.825 2.842 -40.824 40.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.126 3.874 3 C -0.199 4.199 4 C -0.300 4.300 5 N -0.300 5.300 6 C 0.017 3.983 7 C -0.645 4.645 8 C -0.006 4.006 9 O -0.916 6.916 10 Si -0.174 4.174 11 H -0.299 1.299 12 H -0.284 1.284 13 H 0.519 0.481 14 C 0.283 3.717 15 O -0.481 6.481 16 N -0.317 5.317 17 C -0.007 4.007 18 C -0.277 4.277 19 C -0.247 4.247 20 C 0.097 3.903 21 H 0.247 0.753 22 C -0.321 4.321 23 C -0.207 4.207 24 N -0.196 5.196 25 C -0.413 4.413 26 C -0.107 4.107 27 N -0.224 5.224 28 H 0.021 0.979 29 H 0.119 0.881 30 H 0.102 0.898 31 H 0.065 0.935 32 H 0.115 0.885 33 H 0.034 0.966 34 H 0.250 0.750 35 H 0.120 0.880 36 H 0.095 0.905 37 H 0.410 0.590 38 H 0.228 0.772 39 H 0.103 0.897 40 H 0.142 0.858 41 H 0.158 0.842 42 H 0.043 0.957 43 H 0.146 0.854 44 H 0.271 0.729 45 H 0.146 0.854 46 H 0.298 0.702 47 H 0.224 0.776 48 H 0.200 0.800 49 H 0.459 0.541 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.066 3.686 -40.084 40.267 hybrid contribution 0.866 -0.550 7.576 7.645 sum 1.932 3.136 -32.508 32.716 Atomic orbital electron populations 1.22395 0.95220 1.03662 1.01117 1.20326 0.93067 0.91073 0.82953 1.21911 1.00802 0.95994 1.01196 1.25197 1.03433 1.07217 0.94136 1.50180 1.63382 1.02556 1.13896 1.26587 0.77133 0.99662 0.94921 1.21343 1.37419 0.96464 1.09261 1.21546 0.88804 0.94635 0.95575 1.94830 1.89766 1.93412 1.13601 1.07933 0.82723 0.78606 1.48119 1.29949 1.28424 0.48146 1.24359 0.91844 0.74532 0.80945 1.90113 1.64263 1.43863 1.49844 1.47494 1.05242 1.71769 1.07168 1.22328 0.78236 1.01548 0.98545 1.24234 1.03333 0.96802 1.03360 1.23289 1.03928 0.92865 1.04606 1.22928 0.87743 0.87939 0.91688 0.75276 1.21034 0.96776 1.09409 1.04878 1.23184 0.98218 0.88008 1.11308 1.74921 1.19812 1.15695 1.09160 1.29053 0.95135 1.04213 1.12885 1.23253 0.97062 0.94121 0.96252 1.76956 1.25927 1.21073 0.98401 0.97917 0.88058 0.89827 0.93483 0.88523 0.96604 0.74978 0.88029 0.90501 0.58996 0.77186 0.89685 0.85820 0.84189 0.95731 0.85385 0.72914 0.85422 0.70151 0.77599 0.79958 0.54053 0.89601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.91 8.74 71.98 0.63 -2.29 16 2 C 0.21 3.81 1.07 3.60 0.00 3.81 16 3 C -0.14 -3.05 8.11 71.98 0.58 -2.47 16 4 C -0.24 -0.22 6.21 74.43 0.46 0.24 16 5 N -0.50 -16.21 2.39 ******* -3.15 -19.37 16 6 C 0.14 4.56 3.50 78.63 0.28 4.83 16 7 C -0.63 -35.17 3.14 -20.15 -0.06 -35.24 16 8 C 0.09 6.44 0.76 29.10 0.02 6.46 16 9 O -0.97 -94.57 16.97 -130.72 -2.22 -96.79 16 10 Si -0.09 -4.98 20.57 68.60 1.41 -3.57 16 11 H -0.36 -27.14 7.11 99.48 0.71 -26.43 16 12 H -0.35 -25.83 7.11 99.48 0.71 -25.13 16 13 H 0.51 10.79 0.80 -72.63 -0.06 10.73 16 14 C 0.49 29.92 5.35 87.66 0.47 30.39 16 15 O -0.60 -44.18 13.08 15.23 0.20 -43.98 16 16 N -0.58 -21.05 2.86 -767.53 -2.20 -23.25 16 17 C 0.10 2.80 6.60 44.99 0.30 3.10 16 18 C -0.24 -9.32 9.62 30.61 0.29 -9.03 16 19 C -0.21 -7.47 10.16 30.62 0.31 -7.16 16 20 C 0.20 3.11 3.53 46.18 0.16 3.27 16 21 H 0.23 -1.16 7.96 -2.39 -0.02 -1.18 16 22 C -0.29 -3.94 3.85 31.47 0.12 -3.82 16 23 C -0.10 -0.38 5.47 86.44 0.47 0.09 16 24 N -0.51 -2.35 1.12 ******* -3.80 -6.14 16 25 C -0.30 -5.89 3.43 44.73 0.15 -5.74 16 26 C 0.08 5.03 11.37 85.24 0.97 6.00 16 27 N -0.41 -20.17 11.60 -57.56 -0.67 -20.83 16 28 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 29 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.01 0.46 8.03 -2.39 -0.02 0.44 16 34 H 0.24 -1.86 3.20 -160.57 -0.51 -2.37 16 35 H 0.10 -0.46 8.14 -2.39 -0.02 -0.48 16 36 H 0.08 -0.01 6.00 -2.39 -0.01 -0.03 16 37 H 0.41 7.22 0.00 0.00 0.00 7.22 16 38 H 0.21 2.35 8.05 -2.39 -0.02 2.33 16 39 H 0.09 4.72 4.66 -43.33 -0.20 4.52 16 40 H 0.12 3.60 8.14 -2.39 -0.02 3.58 16 41 H 0.14 3.52 8.14 -2.39 -0.02 3.50 16 42 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.13 4.97 0.02 -2.39 0.00 4.97 16 44 H 0.25 -1.68 8.14 -2.39 -0.02 -1.70 16 45 H 0.13 2.36 4.23 -2.39 -0.01 2.35 16 46 H 0.28 -5.69 8.14 -2.39 -0.02 -5.71 16 47 H 0.36 -3.96 4.55 -142.25 -0.65 -4.61 16 48 H 0.18 2.62 6.64 -2.39 -0.02 2.61 16 49 H 0.46 17.13 0.17 -303.57 -0.05 17.08 16 50 H 0.09 6.25 8.06 -2.91 -0.02 6.23 16 Total: -1.00 -212.39 325.63 -5.65 -218.04 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -0.39 Total: 3.42 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: 5.16 Total: -7.54 kcal Atomic # 7 Polarization: -59.78 SS G_CDS: -9.81 Total: -69.59 kcal Atomic # 8 Polarization: -138.74 SS G_CDS: -2.02 Total: -140.76 kcal Atomic # 14 Polarization: -4.98 SS G_CDS: 1.41 Total: -3.57 kcal Total: -212.39 -5.65 -218.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435246987.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1295.018 kcal (2) G-P(sol) polarization free energy of solvation -212.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1082.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -218.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 1076.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.43 seconds