Wall clock time and date at job start Wed Mar 25 2020 04:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34948 * 126.03312 * 2 1 4 4 C 1.35325 * 107.74171 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.03609 * 180.02562 * 4 3 2 6 6 O 1.42907 * 109.47109 * 225.42505 * 5 4 3 7 7 Si 1.86301 * 109.47273 * 345.42352 * 5 4 3 8 8 H 1.48506 * 109.46926 * 187.52081 * 7 5 4 9 9 H 1.48496 * 109.47385 * 307.51827 * 7 5 4 10 10 H 1.48497 * 109.46973 * 67.52169 * 7 5 4 11 11 C 1.50696 * 109.47006 * 105.42739 * 5 4 3 12 12 O 1.21302 * 120.00171 * 126.77005 * 11 5 4 13 13 N 1.34777 * 119.99761 * 306.76062 * 11 5 4 14 14 C 1.40303 * 119.99826 * 174.98676 * 13 11 5 15 15 C 1.35469 * 120.71957 * 327.82535 * 14 13 11 16 16 N 1.36231 * 120.53049 * 180.30633 * 15 14 13 17 17 H 0.96993 * 118.94646 * 179.69982 * 16 15 14 18 18 C 1.35760 * 122.11260 * 359.68804 * 16 15 14 19 19 C 1.34802 * 121.43530 * 0.02562 * 18 16 15 20 20 C 1.41939 * 119.25967 * 0.02562 * 19 18 16 21 21 N 1.33232 * 120.95213 * 179.97438 * 20 19 18 22 22 C 1.36293 * 120.00497 * 210.31262 * 21 20 19 23 23 C 1.39907 * 120.17104 * 54.54770 * 22 21 20 24 24 C 1.37876 * 119.81453 * 179.97438 * 23 22 21 25 25 C 1.38421 * 120.17719 * 359.97438 * 24 23 22 26 26 C 1.38415 * 120.36072 * 0.02562 * 25 24 23 27 27 C 1.37876 * 120.17643 * 359.97438 * 26 25 24 28 28 C 1.39859 * 107.92126 * 0.26523 * 4 3 2 29 29 N 1.30841 * 108.20242 * 359.55296 * 28 4 3 30 30 H 1.09004 * 109.47334 * 89.99838 * 1 2 3 31 31 H 1.09004 * 109.47363 * 209.99754 * 1 2 3 32 32 H 1.09003 * 109.47297 * 329.99733 * 1 2 3 33 33 H 1.07995 * 126.13151 * 0.02562 * 3 2 1 34 34 H 0.96999 * 120.00164 * 354.99686 * 13 11 5 35 35 H 1.07995 * 119.73860 * 0.02562 * 15 14 13 36 36 H 1.07999 * 119.28274 * 179.97438 * 18 16 15 37 37 H 1.08000 * 120.37170 * 179.97438 * 19 18 16 38 38 H 1.07994 * 120.09596 * 0.02562 * 23 22 21 39 39 H 1.07997 * 119.90947 * 179.97438 * 24 23 22 40 40 H 1.08001 * 119.81901 * 179.72486 * 25 24 23 41 41 H 1.07990 * 119.91008 * 179.97438 * 26 25 24 42 42 H 1.07993 * 120.09080 * 180.02562 * 27 26 25 43 43 H 1.08005 * 125.90112 * 179.73396 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2588 1.0913 0.0000 4 6 3.5437 0.6666 -0.0006 5 6 4.7679 1.5454 -0.0002 6 8 5.7061 1.0556 -0.9605 7 14 4.2810 3.2888 -0.4410 8 1 5.5029 4.1139 -0.6190 9 1 3.5009 3.2805 -1.7045 10 1 3.4514 3.8616 0.6493 11 6 5.3967 1.5303 1.3692 12 8 6.5718 1.2566 1.4941 13 7 4.6533 1.8212 2.4552 14 6 5.2100 1.7051 3.7378 15 6 6.1490 0.7652 4.0022 16 7 6.6824 0.6519 5.2506 17 1 7.3501 -0.0321 5.4155 18 6 6.3096 1.4657 6.2713 19 6 5.3863 2.4324 6.0984 20 6 4.7908 2.6025 4.8212 21 7 3.8744 3.5469 4.6127 22 6 2.8974 3.3549 3.6819 23 6 2.0844 2.2178 3.7402 24 6 1.0980 2.0313 2.7951 25 6 0.9107 2.9655 1.7911 26 6 1.7108 4.0931 1.7265 27 6 2.7017 4.2945 2.6639 28 6 3.5347 -0.7320 -0.0071 29 7 2.2891 -1.1327 -0.0006 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5139 33 1 1.9280 2.1193 0.0004 34 1 3.7335 2.1106 2.3500 35 1 6.4742 0.0974 3.2182 36 1 6.7620 1.3351 7.2433 37 1 5.1022 3.0699 6.9225 38 1 2.2285 1.4886 4.5236 39 1 0.4698 1.1539 2.8383 40 1 0.1392 2.8114 1.0512 41 1 1.5586 4.8171 0.9398 42 1 3.3249 5.1749 2.6125 43 1 4.4054 -1.3709 -0.0132 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001639595689.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Mar 25 2020 04:05:13 Heat of formation + Delta-G solvation = 106.420011 kcal Electronic energy + Delta-G solvation = -33015.173995 eV Core-core repulsion = 28836.535796 eV Total energy + Delta-G solvation = -4178.638199 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 352.132 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.71771 -40.18286 -38.95568 -38.10242 -35.58767 -33.49286 -33.01917 -31.71195 -31.30291 -30.61372 -29.83525 -28.74691 -27.77265 -26.06944 -24.32685 -23.41442 -22.37494 -22.07407 -20.83136 -20.27087 -20.05160 -18.75178 -18.68208 -17.26171 -16.82798 -16.13697 -15.88590 -15.53935 -15.08749 -14.77427 -14.66717 -14.32556 -14.14989 -13.94459 -13.78561 -13.51531 -13.29859 -13.04906 -12.91673 -12.70290 -12.63915 -12.39654 -12.09211 -11.97763 -11.66917 -11.41370 -11.15674 -11.10707 -10.59442 -10.50037 -10.27320 -10.06838 -9.77665 -9.72401 -9.36235 -8.88751 -8.52263 -8.39025 -8.17796 -7.69584 -7.28858 -6.51522 -5.91725 -5.37286 1.02339 1.61079 1.79607 1.99424 2.71627 3.04355 3.25936 3.32050 3.41483 3.45710 3.59463 3.87070 4.00400 4.14719 4.26652 4.57180 4.65217 4.94842 5.04064 5.05094 5.27451 5.33748 5.40034 5.47540 5.50019 5.62101 5.67138 5.68424 5.78781 5.97201 5.98853 6.01167 6.08320 6.28915 6.40756 6.59265 6.60921 6.74014 6.83052 6.89846 6.95711 6.99630 7.02044 7.13242 7.19678 7.33186 7.56480 7.64031 7.87009 8.43208 8.55943 8.58972 9.34999 10.02812 Molecular weight = 352.13amu Principal moments of inertia in cm(-1) A = 0.010372 B = 0.006274 C = 0.005345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2698.931971 B = 4462.132443 C = 5237.272272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.386 5.386 3 C 0.016 3.984 4 C -0.196 4.196 5 C 0.070 3.930 6 O -0.811 6.811 7 Si 0.875 3.125 8 H -0.281 1.281 9 H -0.272 1.272 10 H -0.244 1.244 11 C 0.488 3.512 12 O -0.531 6.531 13 N -0.671 5.671 14 C 0.037 3.963 15 C 0.078 3.922 16 N -0.582 5.582 17 H 0.418 0.582 18 C 0.132 3.868 19 C -0.221 4.221 20 C 0.284 3.716 21 N -0.594 5.594 22 C 0.151 3.849 23 C -0.183 4.183 24 C -0.083 4.083 25 C -0.175 4.175 26 C -0.077 4.077 27 C -0.144 4.144 28 C 0.076 3.924 29 N -0.319 5.319 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.164 0.836 34 H 0.412 0.588 35 H 0.177 0.823 36 H 0.164 0.836 37 H 0.149 0.851 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.960 -0.426 13.704 15.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.171 5.171 3 C -0.127 4.127 4 C -0.208 4.208 5 C -0.036 4.036 6 O -0.754 6.754 7 Si 0.702 3.298 8 H -0.206 1.206 9 H -0.197 1.197 10 H -0.171 1.171 11 C 0.280 3.720 12 O -0.406 6.406 13 N -0.327 5.327 14 C -0.067 4.067 15 C -0.053 4.053 16 N -0.186 5.186 17 H 0.253 0.747 18 C -0.001 4.001 19 C -0.250 4.250 20 C 0.122 3.878 21 N -0.310 5.310 22 C 0.047 3.953 23 C -0.204 4.204 24 C -0.102 4.102 25 C -0.194 4.194 26 C -0.096 4.096 27 C -0.165 4.165 28 C -0.110 4.110 29 N -0.142 5.142 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.180 0.820 34 H 0.255 0.745 35 H 0.194 0.806 36 H 0.181 0.819 37 H 0.166 0.834 38 H 0.131 0.869 39 H 0.131 0.869 40 H 0.133 0.867 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -7.400 -0.024 13.450 15.352 hybrid contribution 0.527 -0.049 -0.539 0.756 sum -6.872 -0.073 12.911 14.626 Atomic orbital electron populations 1.21677 0.76101 1.03463 1.02347 1.48148 1.05335 1.03910 1.59688 1.22354 0.91380 0.92856 1.06134 1.21552 0.94941 0.95425 1.08902 1.21688 0.91887 1.01160 0.88839 1.95073 1.52345 1.80386 1.47615 0.87542 0.78603 0.82379 0.81265 1.20639 1.19693 1.17137 1.24638 0.87362 0.72774 0.87264 1.90386 1.17091 1.46939 1.86178 1.44956 1.17284 1.68408 1.02004 1.19396 1.01150 0.98070 0.88082 1.21763 0.98184 0.98846 0.86525 1.41081 1.38075 1.31680 1.07764 0.74657 1.21647 0.94772 0.91388 0.92329 1.20454 1.04498 1.03693 0.96359 1.20568 0.92687 0.83595 0.90917 1.68697 1.10117 1.23103 1.29088 1.18637 0.94379 0.92459 0.89810 1.21479 0.99523 0.97759 1.01656 1.20790 0.97042 0.98059 0.94335 1.20903 1.02156 0.96070 1.00252 1.20872 0.93993 0.97224 0.97527 1.21114 1.00044 1.00969 0.94366 1.23574 0.93878 0.95425 0.98094 1.77151 1.01987 1.08213 1.26806 0.91832 0.90123 0.90256 0.81954 0.74451 0.80586 0.81884 0.83361 0.86937 0.86860 0.86725 0.86343 0.86349 0.80857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.35 11.47 59.85 0.69 2.04 16 2 N -0.39 -7.25 4.01 -68.16 -0.27 -7.53 16 3 C 0.02 0.33 8.24 -17.22 -0.14 0.19 16 4 C -0.20 -4.92 4.32 -105.05 -0.45 -5.37 16 5 C 0.07 1.99 0.75 -29.04 -0.02 1.97 16 6 O -0.81 -28.78 17.06 -55.05 -0.94 -29.72 16 7 Si 0.88 22.15 24.12 -169.99 -4.10 18.05 16 8 H -0.28 -7.76 7.11 56.52 0.40 -7.36 16 9 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.24 -5.08 2.05 56.52 0.12 -4.96 16 11 C 0.49 13.11 5.68 -10.99 -0.06 13.05 16 12 O -0.53 -15.45 14.17 -14.28 -0.20 -15.66 16 13 N -0.67 -15.11 4.49 -8.50 -0.04 -15.15 16 14 C 0.04 0.73 6.09 -81.51 -0.50 0.23 16 15 C 0.08 1.29 9.88 -16.59 -0.16 1.12 16 16 N -0.58 -6.10 5.25 -12.88 -0.07 -6.17 16 17 H 0.42 2.69 8.89 -40.82 -0.36 2.33 16 18 C 0.13 1.20 11.12 -17.03 -0.19 1.01 16 19 C -0.22 -2.81 10.02 -39.38 -0.39 -3.21 16 20 C 0.28 5.02 6.22 -82.39 -0.51 4.51 16 21 N -0.59 -11.41 10.48 -7.38 -0.08 -11.49 16 22 C 0.15 2.86 3.81 -84.64 -0.32 2.54 16 23 C -0.18 -3.18 7.75 -39.09 -0.30 -3.48 16 24 C -0.08 -1.29 9.24 -39.65 -0.37 -1.66 16 25 C -0.17 -2.59 6.61 -39.45 -0.26 -2.85 16 26 C -0.08 -1.24 7.27 -39.65 -0.29 -1.53 16 27 C -0.14 -2.64 7.91 -39.09 -0.31 -2.95 16 28 C 0.08 1.83 11.79 -17.37 -0.20 1.63 16 29 N -0.32 -6.89 12.58 30.62 0.39 -6.51 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.08 0.81 6.67 -51.93 -0.35 0.46 16 33 H 0.16 3.11 3.72 -52.49 -0.20 2.91 16 34 H 0.41 8.82 3.07 -40.82 -0.13 8.70 16 35 H 0.18 3.26 6.29 -52.49 -0.33 2.93 16 36 H 0.16 0.64 8.06 -52.49 -0.42 0.21 16 37 H 0.15 1.62 8.06 -52.49 -0.42 1.19 16 38 H 0.11 1.91 8.00 -52.49 -0.42 1.49 16 39 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 40 H 0.11 1.37 6.82 -52.49 -0.36 1.01 16 41 H 0.12 1.65 8.05 -52.49 -0.42 1.22 16 42 H 0.12 2.17 8.06 -52.49 -0.42 1.75 16 43 H 0.17 4.16 8.06 -52.48 -0.42 3.74 16 LS Contribution 344.68 15.07 5.19 5.19 Total: -1.00 -42.08 344.68 -8.53 -50.61 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -4.60 Total: 11.13 kcal Atomic # 6 Polarization: 11.04 SS G_CDS: -3.81 Total: 7.23 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: -0.07 Total: -46.84 kcal Atomic # 8 Polarization: -44.23 SS G_CDS: -1.14 Total: -45.37 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.10 Total: 18.05 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -42.08 -8.53 -50.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001639595689.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.026 kcal (2) G-P(sol) polarization free energy of solvation -42.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds