Wall clock time and date at job start Wed Mar 25 2020 04:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34948 * 126.03312 * 2 1 4 4 C 1.35325 * 107.74171 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.03609 * 180.02562 * 4 3 2 6 6 O 1.42907 * 109.47109 * 225.42505 * 5 4 3 7 7 Si 1.86301 * 109.47273 * 345.42352 * 5 4 3 8 8 H 1.48506 * 109.46926 * 187.52081 * 7 5 4 9 9 H 1.48496 * 109.47385 * 307.51827 * 7 5 4 10 10 H 1.48497 * 109.46973 * 67.52169 * 7 5 4 11 11 C 1.50696 * 109.47006 * 105.42739 * 5 4 3 12 12 O 1.21302 * 120.00171 * 126.77005 * 11 5 4 13 13 N 1.34777 * 119.99761 * 306.76062 * 11 5 4 14 14 C 1.40303 * 119.99826 * 174.98676 * 13 11 5 15 15 C 1.35469 * 120.71957 * 327.82535 * 14 13 11 16 16 N 1.36231 * 120.53049 * 180.30633 * 15 14 13 17 17 H 0.96993 * 118.94646 * 179.69982 * 16 15 14 18 18 C 1.35760 * 122.11260 * 359.68804 * 16 15 14 19 19 C 1.34802 * 121.43530 * 0.02562 * 18 16 15 20 20 C 1.41939 * 119.25967 * 0.02562 * 19 18 16 21 21 N 1.33232 * 120.95213 * 179.97438 * 20 19 18 22 22 C 1.36293 * 120.00497 * 210.31262 * 21 20 19 23 23 C 1.39907 * 120.17104 * 54.54770 * 22 21 20 24 24 C 1.37876 * 119.81453 * 179.97438 * 23 22 21 25 25 C 1.38421 * 120.17719 * 359.97438 * 24 23 22 26 26 C 1.38415 * 120.36072 * 0.02562 * 25 24 23 27 27 C 1.37876 * 120.17643 * 359.97438 * 26 25 24 28 28 C 1.39859 * 107.92126 * 0.26523 * 4 3 2 29 29 N 1.30841 * 108.20242 * 359.55296 * 28 4 3 30 30 H 1.09004 * 109.47334 * 89.99838 * 1 2 3 31 31 H 1.09004 * 109.47363 * 209.99754 * 1 2 3 32 32 H 1.09003 * 109.47297 * 329.99733 * 1 2 3 33 33 H 1.07995 * 126.13151 * 0.02562 * 3 2 1 34 34 H 0.96999 * 120.00164 * 354.99686 * 13 11 5 35 35 H 1.07995 * 119.73860 * 0.02562 * 15 14 13 36 36 H 1.07999 * 119.28274 * 179.97438 * 18 16 15 37 37 H 1.08000 * 120.37170 * 179.97438 * 19 18 16 38 38 H 1.07994 * 120.09596 * 0.02562 * 23 22 21 39 39 H 1.07997 * 119.90947 * 179.97438 * 24 23 22 40 40 H 1.08001 * 119.81901 * 179.72486 * 25 24 23 41 41 H 1.07990 * 119.91008 * 179.97438 * 26 25 24 42 42 H 1.07993 * 120.09080 * 180.02562 * 27 26 25 43 43 H 1.08005 * 125.90112 * 179.73396 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2588 1.0913 0.0000 4 6 3.5437 0.6666 -0.0006 5 6 4.7679 1.5454 -0.0002 6 8 5.7061 1.0556 -0.9605 7 14 4.2810 3.2888 -0.4410 8 1 5.5029 4.1139 -0.6190 9 1 3.5009 3.2805 -1.7045 10 1 3.4514 3.8616 0.6493 11 6 5.3967 1.5303 1.3692 12 8 6.5718 1.2566 1.4941 13 7 4.6533 1.8212 2.4552 14 6 5.2100 1.7051 3.7378 15 6 6.1490 0.7652 4.0022 16 7 6.6824 0.6519 5.2506 17 1 7.3501 -0.0321 5.4155 18 6 6.3096 1.4657 6.2713 19 6 5.3863 2.4324 6.0984 20 6 4.7908 2.6025 4.8212 21 7 3.8744 3.5469 4.6127 22 6 2.8974 3.3549 3.6819 23 6 2.0844 2.2178 3.7402 24 6 1.0980 2.0313 2.7951 25 6 0.9107 2.9655 1.7911 26 6 1.7108 4.0931 1.7265 27 6 2.7017 4.2945 2.6639 28 6 3.5347 -0.7320 -0.0071 29 7 2.2891 -1.1327 -0.0006 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5139 33 1 1.9280 2.1193 0.0004 34 1 3.7335 2.1106 2.3500 35 1 6.4742 0.0974 3.2182 36 1 6.7620 1.3351 7.2433 37 1 5.1022 3.0699 6.9225 38 1 2.2285 1.4886 4.5236 39 1 0.4698 1.1539 2.8383 40 1 0.1392 2.8114 1.0512 41 1 1.5586 4.8171 0.9398 42 1 3.3249 5.1749 2.6125 43 1 4.4054 -1.3709 -0.0132 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001639595689.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Mar 25 2020 04:05:12 Heat of formation + Delta-G solvation = 71.473633 kcal Electronic energy + Delta-G solvation = -33016.689384 eV Core-core repulsion = 28836.535796 eV Total energy + Delta-G solvation = -4180.153588 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 352.132 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.23239 -41.69554 -40.16647 -39.87145 -36.86544 -35.16880 -34.70292 -33.23384 -32.68918 -31.86695 -31.22799 -30.64859 -29.06552 -27.60380 -26.00322 -24.64967 -23.84443 -23.32607 -22.17755 -21.91682 -21.67196 -20.47890 -19.92087 -18.56352 -18.27852 -17.50141 -17.27932 -16.95502 -16.75025 -16.12580 -16.08161 -16.04098 -15.56510 -15.23239 -15.16459 -14.95195 -14.90930 -14.52811 -14.30735 -14.20481 -13.90120 -13.70315 -13.65575 -13.26288 -13.14244 -12.90284 -12.62121 -12.58539 -12.37411 -12.11828 -11.93266 -11.75291 -11.34494 -11.30023 -11.06284 -10.86268 -10.13971 -9.76361 -9.57490 -9.18029 -8.92263 -8.32500 -7.87134 -7.69023 -0.13156 0.37986 0.51439 0.71959 1.01958 1.23187 1.33886 1.44401 1.76850 1.89373 2.02938 2.08031 2.38235 2.66601 2.69847 2.92965 3.62224 3.71800 3.79137 4.02898 4.07474 4.08814 4.11627 4.23865 4.26237 4.42057 4.46676 4.53429 4.60163 4.72619 4.78431 4.80310 4.84069 4.88870 4.99646 5.16549 5.21053 5.25607 5.31427 5.41003 5.59139 5.64475 5.69846 5.75403 5.80925 5.94848 6.11907 6.30967 6.38350 6.63221 6.84781 7.29851 7.40738 7.89782 Molecular weight = 352.13amu Principal moments of inertia in cm(-1) A = 0.010372 B = 0.006274 C = 0.005345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2698.931971 B = 4462.132443 C = 5237.272272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.364 5.364 3 C 0.039 3.961 4 C -0.233 4.233 5 C 0.026 3.974 6 O -0.898 6.898 7 Si 0.894 3.106 8 H -0.323 1.323 9 H -0.259 1.259 10 H -0.175 1.175 11 C 0.485 3.515 12 O -0.576 6.576 13 N -0.659 5.659 14 C -0.018 4.018 15 C 0.099 3.901 16 N -0.560 5.560 17 H 0.442 0.558 18 C 0.172 3.828 19 C -0.243 4.243 20 C 0.277 3.723 21 N -0.634 5.634 22 C 0.137 3.863 23 C -0.197 4.197 24 C -0.082 4.082 25 C -0.174 4.174 26 C -0.089 4.089 27 C -0.177 4.177 28 C 0.046 3.954 29 N -0.314 5.314 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.116 0.884 33 H 0.188 0.812 34 H 0.416 0.584 35 H 0.152 0.848 36 H 0.237 0.763 37 H 0.170 0.830 38 H 0.108 0.892 39 H 0.138 0.862 40 H 0.156 0.844 41 H 0.145 0.855 42 H 0.106 0.894 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.057 -0.432 16.589 19.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.148 5.148 3 C -0.108 4.108 4 C -0.245 4.245 5 C -0.076 4.076 6 O -0.844 6.844 7 Si 0.720 3.280 8 H -0.252 1.252 9 H -0.184 1.184 10 H -0.100 1.100 11 C 0.277 3.723 12 O -0.455 6.455 13 N -0.314 5.314 14 C -0.121 4.121 15 C -0.034 4.034 16 N -0.165 5.165 17 H 0.282 0.718 18 C 0.039 3.961 19 C -0.270 4.270 20 C 0.118 3.882 21 N -0.352 5.352 22 C 0.033 3.967 23 C -0.219 4.219 24 C -0.101 4.101 25 C -0.192 4.192 26 C -0.107 4.107 27 C -0.198 4.198 28 C -0.138 4.138 29 N -0.138 5.138 30 H 0.105 0.895 31 H 0.118 0.882 32 H 0.134 0.866 33 H 0.204 0.796 34 H 0.261 0.739 35 H 0.169 0.831 36 H 0.253 0.747 37 H 0.188 0.812 38 H 0.126 0.874 39 H 0.156 0.844 40 H 0.174 0.826 41 H 0.162 0.838 42 H 0.124 0.876 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -10.556 -0.078 16.433 19.531 hybrid contribution 1.489 -0.197 -1.198 1.921 sum -9.066 -0.275 15.235 17.731 Atomic orbital electron populations 1.22347 0.71727 1.06356 1.04858 1.48596 1.07452 1.02348 1.56413 1.22411 0.90110 0.94172 1.04069 1.21169 0.95385 0.95394 1.12580 1.22326 0.92273 1.04484 0.88538 1.94964 1.55521 1.83017 1.50939 0.87370 0.78168 0.79021 0.83483 1.25169 1.18382 1.09986 1.24119 0.86956 0.72986 0.88257 1.90326 1.18641 1.49553 1.87008 1.44433 1.17002 1.67493 1.02502 1.19765 1.03753 1.01014 0.87565 1.21497 0.96416 0.97110 0.88427 1.41209 1.37302 1.32018 1.05937 0.71771 1.22652 0.91817 0.87962 0.93654 1.20814 1.05777 1.05578 0.94869 1.21022 0.92706 0.82645 0.91826 1.68684 1.11555 1.24506 1.30457 1.18863 0.94769 0.93062 0.90025 1.21583 1.00243 0.97621 1.02448 1.21148 0.96360 0.98936 0.93655 1.21362 1.02343 0.94940 1.00587 1.21282 0.93464 0.98380 0.97594 1.21282 1.01590 1.01187 0.95726 1.23355 0.94535 0.95381 1.00486 1.77079 1.01054 1.09243 1.26384 0.89478 0.88161 0.86601 0.79563 0.73909 0.83106 0.74697 0.81228 0.87430 0.84381 0.82623 0.83762 0.87554 0.82930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.71 11.47 127.77 1.47 3.18 16 2 N -0.36 -12.56 4.01 -369.55 -1.48 -14.04 16 3 C 0.04 1.54 8.24 83.54 0.69 2.23 16 4 C -0.23 -11.98 4.32 -20.14 -0.09 -12.07 16 5 C 0.03 1.56 0.75 29.10 0.02 1.58 16 6 O -0.90 -68.67 17.06 -130.03 -2.22 -70.89 16 7 Si 0.89 46.22 24.12 68.60 1.65 47.87 16 8 H -0.32 -18.98 7.11 99.48 0.71 -18.28 16 9 H -0.26 -12.77 7.11 99.48 0.71 -12.06 16 10 H -0.18 -7.15 2.05 99.48 0.20 -6.94 16 11 C 0.48 27.72 5.68 87.66 0.50 28.22 16 12 O -0.58 -36.19 14.17 15.85 0.22 -35.96 16 13 N -0.66 -30.79 4.49 -299.20 -1.34 -32.14 16 14 C -0.02 -0.70 6.09 39.38 0.24 -0.46 16 15 C 0.10 3.28 9.88 83.37 0.82 4.10 16 16 N -0.56 -10.02 5.25 -194.67 -1.02 -11.05 16 17 H 0.44 3.99 8.89 -92.71 -0.82 3.17 16 18 C 0.17 2.27 11.12 83.30 0.93 3.20 16 19 C -0.24 -5.46 10.02 22.40 0.22 -5.24 16 20 C 0.28 9.67 6.22 42.09 0.26 9.93 16 21 N -0.63 -24.49 10.48 -177.25 -1.86 -26.35 16 22 C 0.14 5.16 3.81 39.26 0.15 5.31 16 23 C -0.20 -6.65 7.75 22.59 0.18 -6.47 16 24 C -0.08 -2.29 9.24 22.23 0.21 -2.08 16 25 C -0.17 -4.40 6.61 22.36 0.15 -4.25 16 26 C -0.09 -2.60 7.27 22.23 0.16 -2.44 16 27 C -0.18 -6.38 7.91 22.59 0.18 -6.20 16 28 C 0.05 2.34 11.79 85.23 1.00 3.35 16 29 N -0.31 -13.32 12.58 -57.03 -0.72 -14.04 16 30 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 32 H 0.12 1.52 6.67 -2.39 -0.02 1.51 16 33 H 0.19 6.45 3.72 -2.91 -0.01 6.44 16 34 H 0.42 18.05 3.07 -92.71 -0.28 17.76 16 35 H 0.15 5.93 6.29 -2.91 -0.02 5.92 16 36 H 0.24 -0.11 8.06 -2.91 -0.02 -0.13 16 37 H 0.17 3.10 8.06 -2.91 -0.02 3.08 16 38 H 0.11 3.61 8.00 -2.91 -0.02 3.58 16 39 H 0.14 3.09 8.06 -2.91 -0.02 3.06 16 40 H 0.16 2.65 6.82 -2.91 -0.02 2.63 16 41 H 0.14 3.43 8.05 -2.92 -0.02 3.41 16 42 H 0.11 3.97 8.06 -2.91 -0.02 3.94 16 43 H 0.15 8.07 8.06 -2.91 -0.02 8.05 16 Total: -1.00 -107.01 344.68 0.56 -106.44 By element: Atomic # 1 Polarization: 28.03 SS G_CDS: 0.24 Total: 28.27 kcal Atomic # 6 Polarization: 14.79 SS G_CDS: 7.09 Total: 21.88 kcal Atomic # 7 Polarization: -91.19 SS G_CDS: -6.42 Total: -97.61 kcal Atomic # 8 Polarization: -104.86 SS G_CDS: -1.99 Total: -106.85 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 1.65 Total: 47.87 kcal Total: -107.01 0.56 -106.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001639595689.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.916 kcal (2) G-P(sol) polarization free energy of solvation -107.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -106.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds