Wall clock time and date at job start Wed Mar 25 2020 04:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38265 * 119.97010 * 2 1 4 4 C 1.38181 * 120.02322 * 179.97438 * 3 2 1 5 5 C 1.38476 * 119.97438 * 0.02562 * 4 3 2 6 6 F 1.35095 * 120.02717 * 179.97438 * 5 4 3 7 7 C 1.38444 * 119.94782 * 359.97438 * 5 4 3 8 8 C 1.38218 * 119.97417 * 359.74709 * 7 5 4 9 9 C 1.50703 * 119.98806 * 180.27937 * 8 7 5 10 10 O 1.42899 * 109.46799 * 237.10763 * 9 8 7 11 11 Si 1.86296 * 109.46981 * 357.10668 * 9 8 7 12 12 H 1.48501 * 109.47504 * 54.87195 * 11 9 8 13 13 H 1.48502 * 109.47112 * 174.87195 * 11 9 8 14 14 H 1.48501 * 109.47380 * 294.87048 * 11 9 8 15 15 C 1.50699 * 109.47178 * 117.10781 * 9 8 7 16 16 O 1.21277 * 120.00140 * 121.47675 * 15 9 8 17 17 N 1.34787 * 119.99908 * 301.47410 * 15 9 8 18 18 C 1.47074 * 120.87788 * 184.02304 * 17 15 9 19 19 C 1.53693 * 108.27637 * 128.75890 * 18 17 15 20 20 N 1.46900 * 109.25929 * 54.07870 * 19 18 17 21 21 C 1.46901 * 111.00098 * 172.61141 * 20 19 18 22 22 C 1.52999 * 109.47148 * 294.30241 * 21 20 19 23 23 C 1.47195 * 109.47250 * 180.02562 * 22 21 20 24 24 N 9.87355 * 100.17711 * 115.84948 * 7 1 2 25 25 C 1.46904 * 111.26713 * 296.75694 * 20 19 18 26 26 C 1.47073 * 120.87847 * 4.29943 * 17 15 9 27 27 H 1.08996 * 109.47386 * 85.58784 * 1 2 3 28 28 H 1.09006 * 109.47371 * 325.57827 * 1 2 3 29 29 H 1.09000 * 109.47294 * 205.58632 * 1 2 3 30 30 H 1.08001 * 119.99411 * 359.97438 * 3 2 1 31 31 H 1.07997 * 120.01401 * 180.02562 * 4 3 2 32 32 H 1.07998 * 120.01045 * 179.97438 * 7 5 4 33 33 H 1.09008 * 109.62558 * 248.52250 * 18 17 15 34 34 H 1.08992 * 109.63268 * 9.10250 * 18 17 15 35 35 H 1.09005 * 109.64782 * 294.07232 * 19 18 17 36 36 H 1.09004 * 109.42675 * 173.94351 * 19 18 17 37 37 H 1.08999 * 109.47232 * 54.30035 * 21 20 19 38 38 H 1.09005 * 109.47008 * 174.29930 * 21 20 19 39 39 H 1.09004 * 109.46555 * 300.00342 * 22 21 20 40 40 H 1.08995 * 109.47187 * 59.99421 * 22 21 20 41 41 H 1.09000 * 109.49380 * 303.14677 * 25 20 19 42 42 H 1.09003 * 109.51339 * 183.07564 * 25 20 19 43 43 H 1.08997 * 109.63415 * 350.89842 * 26 17 15 44 44 H 1.09009 * 109.62719 * 111.48029 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1978 0.0000 4 6 3.5795 1.1991 0.0005 5 6 4.2725 0.0001 0.0005 6 9 5.6234 0.0002 0.0005 7 6 3.5797 -1.1985 0.0005 8 6 2.1976 -1.1973 0.0058 9 6 1.4432 -2.5019 0.0122 10 8 0.5671 -2.5510 -1.1156 11 14 2.6506 -3.9178 -0.0773 12 1 3.6382 -3.7967 1.0251 13 1 1.9175 -5.2026 0.0538 14 1 3.3587 -3.8829 -1.3822 15 6 0.6361 -2.6093 1.2803 16 8 -0.5678 -2.7443 1.2233 17 7 1.2523 -2.5555 2.4779 18 6 0.4963 -2.7461 3.7250 19 6 1.2135 -3.8148 4.5649 20 7 2.6190 -3.4273 4.7443 21 6 3.2976 -4.3286 5.6852 22 6 2.6866 -4.1654 7.0784 23 6 3.3669 -5.0680 8.0213 24 7 3.8888 -5.7665 8.7484 25 6 3.3269 -3.3793 3.4580 26 6 2.6973 -2.2988 2.5724 27 1 -0.3634 0.0791 -1.0246 28 1 -0.3634 0.8478 0.5809 29 1 -0.3634 -0.9269 0.4438 30 1 1.6571 2.1327 -0.0004 31 1 4.1188 2.1347 0.0010 32 1 4.1191 -2.1341 0.0001 33 1 0.4580 -1.8069 4.2770 34 1 -0.5153 -3.0789 3.4927 35 1 1.1636 -4.7766 4.0544 36 1 0.7310 -3.8943 5.5391 37 1 3.1752 -5.3595 5.3533 38 1 4.3589 -4.0825 5.7228 39 1 2.8090 -3.1344 7.4103 40 1 1.6254 -4.4113 7.0408 41 1 3.2476 -4.3471 2.9628 42 1 4.3772 -3.1431 3.6289 43 1 3.1417 -2.3358 1.5778 44 1 2.8666 -1.3175 3.0158 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000636339608.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Mar 25 2020 04:09:49 Heat of formation + Delta-G solvation = -46.185841 kcal Electronic energy + Delta-G solvation = -30266.901640 eV Core-core repulsion = 26100.410743 eV Total energy + Delta-G solvation = -4166.490896 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.37313 -40.02576 -38.64950 -37.59660 -36.74369 -34.50381 -32.80371 -31.64757 -31.37442 -30.61948 -29.26677 -27.01522 -25.88504 -24.63281 -23.20956 -22.84893 -21.88081 -21.00646 -19.87962 -18.30725 -17.72378 -17.06164 -16.23335 -15.83859 -15.69155 -15.29280 -15.09673 -14.92346 -14.88664 -14.66622 -14.58626 -14.23670 -13.76343 -13.61127 -13.32121 -13.07153 -13.02754 -12.88167 -12.78958 -12.46045 -12.22368 -12.14240 -11.78679 -11.60096 -11.40960 -11.06568 -10.98357 -10.95755 -10.91785 -10.77842 -10.69565 -10.25811 -10.15578 -9.89423 -9.70426 -8.89526 -8.53035 -8.12531 -7.86075 -7.60953 -6.12825 -5.60942 1.80945 1.93128 2.47020 2.54587 3.03227 3.16091 3.26507 3.44605 3.73689 3.82614 4.13529 4.27812 4.36562 4.62238 4.76579 4.83678 5.02121 5.11475 5.21531 5.31893 5.35539 5.38886 5.46657 5.53486 5.58729 5.64070 5.72000 5.78521 5.89039 5.92119 6.02845 6.04863 6.18752 6.34975 6.36747 6.45294 6.61547 6.69787 6.75929 6.85695 6.87731 6.94308 6.98122 7.25761 7.30897 7.32589 7.52432 7.74739 8.28658 9.22838 9.79265 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.013282 B = 0.004382 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.660457 B = 6388.491563 C = 7121.633329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.063 4.063 3 C -0.100 4.100 4 C -0.173 4.173 5 C 0.085 3.915 6 F -0.151 7.151 7 C -0.182 4.182 8 C -0.025 4.025 9 C 0.028 3.972 10 O -0.794 6.794 11 Si 0.909 3.091 12 H -0.279 1.279 13 H -0.280 1.280 14 H -0.271 1.271 15 C 0.497 3.503 16 O -0.530 6.530 17 N -0.626 5.626 18 C 0.113 3.887 19 C 0.035 3.965 20 N -0.534 5.534 21 C 0.058 3.942 22 C -0.026 4.026 23 C 0.211 3.789 24 N -0.442 5.442 25 C 0.040 3.960 26 C 0.096 3.904 27 H 0.068 0.932 28 H 0.036 0.964 29 H 0.104 0.896 30 H 0.122 0.878 31 H 0.124 0.876 32 H 0.125 0.875 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.040 0.960 36 H 0.085 0.915 37 H 0.042 0.958 38 H 0.084 0.916 39 H 0.120 0.880 40 H 0.110 0.890 41 H 0.042 0.958 42 H 0.085 0.915 43 H 0.111 0.889 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.138 3.446 10.913 12.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.063 4.063 3 C -0.118 4.118 4 C -0.192 4.192 5 C 0.066 3.934 6 F -0.130 7.130 7 C -0.201 4.201 8 C -0.027 4.027 9 C -0.076 4.076 10 O -0.737 6.737 11 Si 0.738 3.262 12 H -0.209 1.209 13 H -0.206 1.206 14 H -0.196 1.196 15 C 0.289 3.711 16 O -0.406 6.406 17 N -0.366 5.366 18 C -0.011 4.011 19 C -0.094 4.094 20 N -0.259 5.259 21 C -0.072 4.072 22 C -0.066 4.066 23 C -0.107 4.107 24 N -0.119 5.119 25 C -0.088 4.088 26 C -0.027 4.027 27 H 0.087 0.913 28 H 0.055 0.945 29 H 0.123 0.877 30 H 0.140 0.860 31 H 0.142 0.858 32 H 0.142 0.858 33 H 0.084 0.916 34 H 0.109 0.891 35 H 0.058 0.942 36 H 0.103 0.897 37 H 0.060 0.940 38 H 0.103 0.897 39 H 0.138 0.862 40 H 0.128 0.872 41 H 0.060 0.940 42 H 0.103 0.897 43 H 0.128 0.872 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.658 2.115 11.798 13.254 hybrid contribution 0.157 -0.327 -0.560 0.667 sum 5.814 1.787 11.238 12.779 Atomic orbital electron populations 1.20991 0.90539 1.03487 1.02334 1.19833 0.97195 0.91485 0.97813 1.20875 0.92916 0.97837 1.00217 1.20809 0.94842 0.96183 1.07398 1.17522 0.76107 0.94603 1.05167 1.91421 1.29676 1.97514 1.94387 1.20986 0.95077 0.96516 1.07506 1.21274 0.91552 0.98965 0.90860 1.22610 0.98607 0.93394 0.92954 1.95133 1.56173 1.89919 1.32522 0.87208 0.77463 0.83126 0.78412 1.20852 1.20606 1.19598 1.23757 0.89840 0.72895 0.84618 1.90439 1.15266 1.48514 1.86361 1.48662 1.08351 1.73798 1.05803 1.21601 0.96371 0.97801 0.85309 1.22729 0.88582 0.97847 1.00193 1.61928 1.02451 1.50179 1.11349 1.21980 0.99174 0.95659 0.90365 1.19323 0.99492 0.97434 0.90382 1.29169 0.93638 0.93850 0.94044 1.81208 1.09626 1.10448 1.10659 1.22638 0.98139 0.99409 0.88592 1.22393 0.81300 0.97420 1.01619 0.91318 0.94465 0.87724 0.86001 0.85841 0.85761 0.91569 0.89101 0.94157 0.89724 0.93957 0.89729 0.86240 0.87243 0.93954 0.89698 0.87168 0.91282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.63 8.80 36.01 0.32 -2.31 16 2 C -0.06 -1.36 5.74 -104.62 -0.60 -1.96 16 3 C -0.10 -1.77 9.72 -39.59 -0.38 -2.16 16 4 C -0.17 -2.89 10.03 -39.51 -0.40 -3.28 16 5 C 0.09 1.55 7.30 -39.42 -0.29 1.26 16 6 F -0.15 -2.60 17.27 2.25 0.04 -2.56 16 7 C -0.18 -3.70 6.86 -39.51 -0.27 -3.97 16 8 C -0.03 -0.58 3.58 -104.63 -0.37 -0.95 16 9 C 0.03 0.74 0.38 -29.03 -0.01 0.73 16 10 O -0.79 -26.09 15.77 -55.14 -0.87 -26.96 16 11 Si 0.91 21.25 21.86 -169.99 -3.72 17.53 16 12 H -0.28 -5.19 4.15 56.52 0.23 -4.96 16 13 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 15 C 0.50 12.17 4.41 -10.98 -0.05 12.12 16 16 O -0.53 -14.65 14.31 -14.35 -0.21 -14.85 16 17 N -0.63 -12.00 2.89 -172.19 -0.50 -12.50 16 18 C 0.11 1.71 6.61 -3.37 -0.02 1.69 16 19 C 0.03 0.41 5.48 -3.46 -0.02 0.39 16 20 N -0.53 -5.91 4.63 -234.01 -1.08 -7.00 16 21 C 0.06 0.48 4.92 -3.82 -0.02 0.46 16 22 C -0.03 -0.16 5.63 -29.52 -0.17 -0.33 16 23 C 0.21 1.93 15.43 -20.79 -0.32 1.61 16 24 N -0.44 -5.48 18.53 42.12 0.78 -4.70 16 25 C 0.04 0.55 4.94 -3.70 -0.02 0.53 16 26 C 0.10 1.60 4.56 -3.61 -0.02 1.59 16 27 H 0.07 1.60 8.14 -51.93 -0.42 1.17 16 28 H 0.04 0.69 8.11 -51.93 -0.42 0.27 16 29 H 0.10 2.71 3.43 -51.93 -0.18 2.53 16 30 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 31 H 0.12 1.68 8.06 -52.49 -0.42 1.25 16 32 H 0.12 2.42 4.62 -52.49 -0.24 2.18 16 33 H 0.07 0.91 8.14 -51.92 -0.42 0.48 16 34 H 0.09 1.50 7.09 -51.93 -0.37 1.13 16 35 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.70 6.16 -51.93 -0.32 0.38 16 37 H 0.04 0.37 8.12 -51.93 -0.42 -0.05 16 38 H 0.08 0.66 7.97 -51.93 -0.41 0.24 16 39 H 0.12 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.11 0.54 6.40 -51.93 -0.33 0.21 16 41 H 0.04 0.63 7.09 -51.93 -0.37 0.26 16 42 H 0.08 0.97 7.99 -51.93 -0.41 0.55 16 43 H 0.11 2.05 0.97 -51.93 -0.05 2.00 16 44 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 LS Contribution 342.78 15.07 5.17 5.17 Total: -1.00 -34.68 342.78 -8.48 -43.16 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: -5.45 Total: -2.71 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: -2.64 Total: 5.42 kcal Atomic # 7 Polarization: -23.40 SS G_CDS: -0.80 Total: -24.20 kcal Atomic # 8 Polarization: -40.74 SS G_CDS: -1.07 Total: -41.81 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 0.04 Total: -2.56 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -3.72 Total: 17.53 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.68 -8.48 -43.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000636339608.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.027 kcal (2) G-P(sol) polarization free energy of solvation -34.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds