Wall clock time and date at job start Wed Mar 25 2020 04:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38265 * 119.97010 * 2 1 4 4 C 1.38181 * 120.02322 * 179.97438 * 3 2 1 5 5 C 1.38476 * 119.97438 * 0.02562 * 4 3 2 6 6 F 1.35095 * 120.02717 * 179.97438 * 5 4 3 7 7 C 1.38444 * 119.94782 * 359.97438 * 5 4 3 8 8 C 1.38218 * 119.97417 * 359.74709 * 7 5 4 9 9 C 1.50703 * 119.98806 * 180.27937 * 8 7 5 10 10 O 1.42899 * 109.46799 * 237.10763 * 9 8 7 11 11 Si 1.86296 * 109.46981 * 357.10668 * 9 8 7 12 12 H 1.48501 * 109.47504 * 54.87195 * 11 9 8 13 13 H 1.48502 * 109.47112 * 174.87195 * 11 9 8 14 14 H 1.48501 * 109.47380 * 294.87048 * 11 9 8 15 15 C 1.50699 * 109.47178 * 117.10781 * 9 8 7 16 16 O 1.21277 * 120.00140 * 121.47675 * 15 9 8 17 17 N 1.34787 * 119.99908 * 301.47410 * 15 9 8 18 18 C 1.47074 * 120.87788 * 184.02304 * 17 15 9 19 19 C 1.53693 * 108.27637 * 128.75890 * 18 17 15 20 20 N 1.46900 * 109.25929 * 54.07870 * 19 18 17 21 21 C 1.46901 * 111.00098 * 172.61141 * 20 19 18 22 22 C 1.52999 * 109.47148 * 294.30241 * 21 20 19 23 23 C 1.47195 * 109.47250 * 180.02562 * 22 21 20 24 24 N 9.87355 * 100.17711 * 115.84948 * 7 1 2 25 25 C 1.46904 * 111.26713 * 296.75694 * 20 19 18 26 26 C 1.47073 * 120.87847 * 4.29943 * 17 15 9 27 27 H 1.08996 * 109.47386 * 85.58784 * 1 2 3 28 28 H 1.09006 * 109.47371 * 325.57827 * 1 2 3 29 29 H 1.09000 * 109.47294 * 205.58632 * 1 2 3 30 30 H 1.08001 * 119.99411 * 359.97438 * 3 2 1 31 31 H 1.07997 * 120.01401 * 180.02562 * 4 3 2 32 32 H 1.07998 * 120.01045 * 179.97438 * 7 5 4 33 33 H 1.09008 * 109.62558 * 248.52250 * 18 17 15 34 34 H 1.08992 * 109.63268 * 9.10250 * 18 17 15 35 35 H 1.09005 * 109.64782 * 294.07232 * 19 18 17 36 36 H 1.09004 * 109.42675 * 173.94351 * 19 18 17 37 37 H 1.08999 * 109.47232 * 54.30035 * 21 20 19 38 38 H 1.09005 * 109.47008 * 174.29930 * 21 20 19 39 39 H 1.09004 * 109.46555 * 300.00342 * 22 21 20 40 40 H 1.08995 * 109.47187 * 59.99421 * 22 21 20 41 41 H 1.09000 * 109.49380 * 303.14677 * 25 20 19 42 42 H 1.09003 * 109.51339 * 183.07564 * 25 20 19 43 43 H 1.08997 * 109.63415 * 350.89842 * 26 17 15 44 44 H 1.09009 * 109.62719 * 111.48029 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1978 0.0000 4 6 3.5795 1.1991 0.0005 5 6 4.2725 0.0001 0.0005 6 9 5.6234 0.0002 0.0005 7 6 3.5797 -1.1985 0.0005 8 6 2.1976 -1.1973 0.0058 9 6 1.4432 -2.5019 0.0122 10 8 0.5671 -2.5510 -1.1156 11 14 2.6506 -3.9178 -0.0773 12 1 3.6382 -3.7967 1.0251 13 1 1.9175 -5.2026 0.0538 14 1 3.3587 -3.8829 -1.3822 15 6 0.6361 -2.6093 1.2803 16 8 -0.5678 -2.7443 1.2233 17 7 1.2523 -2.5555 2.4779 18 6 0.4963 -2.7461 3.7250 19 6 1.2135 -3.8148 4.5649 20 7 2.6190 -3.4273 4.7443 21 6 3.2976 -4.3286 5.6852 22 6 2.6866 -4.1654 7.0784 23 6 3.3669 -5.0680 8.0213 24 7 3.8888 -5.7665 8.7484 25 6 3.3269 -3.3793 3.4580 26 6 2.6973 -2.2988 2.5724 27 1 -0.3634 0.0791 -1.0246 28 1 -0.3634 0.8478 0.5809 29 1 -0.3634 -0.9269 0.4438 30 1 1.6571 2.1327 -0.0004 31 1 4.1188 2.1347 0.0010 32 1 4.1191 -2.1341 0.0001 33 1 0.4580 -1.8069 4.2770 34 1 -0.5153 -3.0789 3.4927 35 1 1.1636 -4.7766 4.0544 36 1 0.7310 -3.8943 5.5391 37 1 3.1752 -5.3595 5.3533 38 1 4.3589 -4.0825 5.7228 39 1 2.8090 -3.1344 7.4103 40 1 1.6254 -4.4113 7.0408 41 1 3.2476 -4.3471 2.9628 42 1 4.3772 -3.1431 3.6289 43 1 3.1417 -2.3358 1.5778 44 1 2.8666 -1.3175 3.0158 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000636339608.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Mar 25 2020 04:09:48 Heat of formation + Delta-G solvation = -72.587671 kcal Electronic energy + Delta-G solvation = -30268.046509 eV Core-core repulsion = 26100.410743 eV Total energy + Delta-G solvation = -4167.635766 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.76280 -41.53783 -39.91159 -38.99690 -37.68576 -35.80754 -34.44089 -33.18944 -32.33035 -31.85904 -31.06225 -28.30204 -27.47461 -26.12544 -24.49389 -23.83603 -23.36526 -22.34664 -21.23464 -19.70685 -18.73785 -18.32562 -17.78528 -17.16678 -16.77895 -16.51768 -16.49720 -16.32945 -16.11819 -15.88314 -15.73889 -15.40746 -15.34739 -14.77750 -14.64366 -14.52690 -14.33013 -14.32017 -13.88580 -13.71646 -13.51817 -13.36664 -12.93957 -12.76393 -12.62537 -12.57293 -12.41172 -12.26365 -12.25785 -12.10033 -12.07415 -11.90967 -11.63784 -11.60067 -11.35186 -10.75058 -9.66130 -9.61256 -9.22224 -9.16834 -8.32288 -7.76667 0.30577 0.43706 1.11461 1.23001 1.33494 1.76864 1.87362 1.92079 2.25275 2.56139 2.74548 2.76658 3.37425 3.38432 3.83232 3.92903 3.95944 4.05307 4.05977 4.18435 4.19599 4.32000 4.38228 4.43392 4.46485 4.55061 4.58983 4.62266 4.77009 4.80420 4.84150 4.94546 4.97546 4.99398 5.03615 5.10178 5.10731 5.17183 5.20969 5.24682 5.42638 5.58660 5.82783 5.97198 5.99194 6.04495 6.16020 6.61392 6.65231 7.40315 7.89739 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.013282 B = 0.004382 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.660457 B = 6388.491563 C = 7121.633329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.093 4.093 3 C -0.085 4.085 4 C -0.154 4.154 5 C 0.093 3.907 6 F -0.141 7.141 7 C -0.189 4.189 8 C -0.048 4.048 9 C -0.010 4.010 10 O -0.880 6.880 11 Si 0.922 3.078 12 H -0.199 1.199 13 H -0.311 1.311 14 H -0.286 1.286 15 C 0.496 3.504 16 O -0.583 6.583 17 N -0.621 5.621 18 C 0.106 3.894 19 C 0.042 3.958 20 N -0.525 5.525 21 C 0.058 3.942 22 C -0.016 4.016 23 C 0.241 3.759 24 N -0.505 5.505 25 C 0.040 3.960 26 C 0.089 3.911 27 H 0.042 0.958 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.158 0.842 31 H 0.168 0.832 32 H 0.128 0.872 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.023 0.977 36 H 0.129 0.871 37 H 0.038 0.962 38 H 0.097 0.903 39 H 0.145 0.855 40 H 0.130 0.870 41 H 0.027 0.973 42 H 0.117 0.883 43 H 0.090 0.910 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.199 5.843 13.916 17.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.094 4.094 3 C -0.103 4.103 4 C -0.172 4.172 5 C 0.073 3.927 6 F -0.119 7.119 7 C -0.207 4.207 8 C -0.050 4.050 9 C -0.111 4.111 10 O -0.826 6.826 11 Si 0.750 3.250 12 H -0.124 1.124 13 H -0.240 1.240 14 H -0.213 1.213 15 C 0.288 3.712 16 O -0.463 6.463 17 N -0.358 5.358 18 C -0.016 4.016 19 C -0.087 4.087 20 N -0.250 5.250 21 C -0.071 4.071 22 C -0.056 4.056 23 C -0.076 4.076 24 N -0.183 5.183 25 C -0.088 4.088 26 C -0.033 4.033 27 H 0.061 0.939 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.176 0.824 31 H 0.186 0.814 32 H 0.145 0.855 33 H 0.106 0.894 34 H 0.086 0.914 35 H 0.042 0.958 36 H 0.147 0.853 37 H 0.057 0.943 38 H 0.115 0.885 39 H 0.162 0.838 40 H 0.148 0.852 41 H 0.045 0.955 42 H 0.135 0.865 43 H 0.108 0.892 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.801 4.529 14.890 17.880 hybrid contribution -0.776 -0.974 -1.475 1.930 sum 8.026 3.555 13.415 16.032 Atomic orbital electron populations 1.20827 0.92155 1.02959 1.00924 1.19948 0.96550 0.92931 0.99935 1.21168 0.93582 0.97500 0.98046 1.21238 0.94316 0.97260 1.04384 1.17517 0.76511 0.94368 1.04259 1.91455 1.28823 1.97457 1.94194 1.20920 0.93953 0.97845 1.08015 1.20831 0.92591 0.97739 0.93812 1.23129 0.99122 0.96809 0.92035 1.95030 1.59348 1.92103 1.36154 0.87039 0.78162 0.79646 0.80146 1.12397 1.23986 1.21268 1.23240 0.88980 0.72911 0.86036 1.90387 1.17213 1.51353 1.87381 1.48521 1.09809 1.71997 1.05491 1.21863 0.95465 1.00169 0.84090 1.22710 0.89257 0.95305 1.01387 1.61903 1.01821 1.50932 1.10334 1.22033 0.99781 0.94836 0.90464 1.19448 0.99883 0.98022 0.88281 1.29596 0.92166 0.92714 0.93119 1.81252 1.11719 1.12551 1.12774 1.22627 0.99757 0.97256 0.89190 1.22550 0.79511 0.99743 1.01531 0.93893 0.91069 0.91457 0.82404 0.81439 0.85463 0.89390 0.91409 0.95841 0.85312 0.94342 0.88492 0.83757 0.85249 0.95474 0.86536 0.89199 0.89528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.25 8.80 71.24 0.63 -4.62 16 2 C -0.09 -4.02 5.74 -19.86 -0.11 -4.14 16 3 C -0.09 -2.72 9.72 22.26 0.22 -2.51 16 4 C -0.15 -4.35 10.03 22.31 0.22 -4.13 16 5 C 0.09 3.02 7.30 22.38 0.16 3.19 16 6 F -0.14 -4.20 17.27 44.97 0.78 -3.43 16 7 C -0.19 -7.36 6.86 22.31 0.15 -7.21 16 8 C -0.05 -2.25 3.58 -19.87 -0.07 -2.32 16 9 C -0.01 -0.54 0.38 29.10 0.01 -0.53 16 10 O -0.88 -62.63 15.77 -129.95 -2.05 -64.67 16 11 Si 0.92 44.22 21.86 68.60 1.50 45.72 16 12 H -0.20 -6.94 4.15 99.48 0.41 -6.53 16 13 H -0.31 -16.37 7.11 99.48 0.71 -15.66 16 14 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 15 C 0.50 25.54 4.41 87.66 0.39 25.92 16 16 O -0.58 -34.81 14.31 16.01 0.23 -34.58 16 17 N -0.62 -23.65 2.89 -817.07 -2.36 -26.01 16 18 C 0.11 3.12 6.61 86.50 0.57 3.69 16 19 C 0.04 0.85 5.48 86.54 0.47 1.32 16 20 N -0.53 -9.29 4.63 -894.29 -4.14 -13.43 16 21 C 0.06 0.69 4.92 86.30 0.42 1.11 16 22 C -0.02 -0.12 5.63 28.79 0.16 0.04 16 23 C 0.24 3.61 15.43 89.45 1.38 4.99 16 24 N -0.50 -11.58 18.53 20.00 0.37 -11.21 16 25 C 0.04 0.93 4.94 86.38 0.43 1.36 16 26 C 0.09 2.74 4.56 86.35 0.39 3.14 16 27 H 0.04 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.07 2.66 8.11 -2.38 -0.02 2.64 16 29 H 0.07 3.73 3.43 -2.39 -0.01 3.72 16 30 H 0.16 3.87 8.06 -2.91 -0.02 3.85 16 31 H 0.17 3.36 8.06 -2.91 -0.02 3.34 16 32 H 0.13 4.74 4.62 -2.91 -0.01 4.73 16 33 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 34 H 0.07 2.31 7.09 -2.39 -0.02 2.29 16 35 H 0.02 0.57 8.14 -2.38 -0.02 0.55 16 36 H 0.13 1.50 6.16 -2.39 -0.01 1.48 16 37 H 0.04 0.53 8.12 -2.39 -0.02 0.51 16 38 H 0.10 0.99 7.97 -2.38 -0.02 0.97 16 39 H 0.14 0.52 8.14 -2.38 -0.02 0.50 16 40 H 0.13 0.54 6.40 -2.39 -0.02 0.52 16 41 H 0.03 0.72 7.09 -2.39 -0.02 0.70 16 42 H 0.12 2.01 7.99 -2.39 -0.02 1.99 16 43 H 0.09 3.15 0.97 -2.39 0.00 3.15 16 44 H 0.09 2.39 8.14 -2.38 -0.02 2.38 16 Total: -1.00 -87.72 342.78 1.27 -86.45 By element: Atomic # 1 Polarization: 0.34 SS G_CDS: 1.52 Total: 1.86 kcal Atomic # 6 Polarization: 13.88 SS G_CDS: 5.43 Total: 19.31 kcal Atomic # 7 Polarization: -44.53 SS G_CDS: -6.13 Total: -50.66 kcal Atomic # 8 Polarization: -97.44 SS G_CDS: -1.82 Total: -99.26 kcal Atomic # 9 Polarization: -4.20 SS G_CDS: 0.78 Total: -3.43 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 1.50 Total: 45.72 kcal Total: -87.72 1.27 -86.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000636339608.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.862 kcal (2) G-P(sol) polarization free energy of solvation -87.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds