Wall clock time and date at job start Wed Mar 25 2020 05:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38235 * 119.99624 * 2 1 4 4 C 1.38239 * 119.99496 * 179.97438 * 3 2 1 5 5 C 1.38230 * 120.00193 * 359.95316 * 4 3 2 6 6 C 1.50703 * 120.00065 * 179.97438 * 5 4 3 7 7 O 1.42897 * 109.47288 * 210.00187 * 6 5 4 8 8 Si 1.86304 * 109.47204 * 330.00607 * 6 5 4 9 9 H 1.48494 * 109.47226 * 179.97438 * 8 6 5 10 10 H 1.48506 * 109.46828 * 299.99778 * 8 6 5 11 11 H 1.48494 * 109.47032 * 59.99615 * 8 6 5 12 12 C 1.50701 * 109.46805 * 90.00367 * 6 5 4 13 13 O 1.21283 * 120.00050 * 125.00166 * 12 6 5 14 14 N 1.34776 * 120.00012 * 304.99878 * 12 6 5 15 15 C 1.46501 * 120.00030 * 180.02562 * 14 12 6 16 16 C 1.53005 * 109.47024 * 180.02562 * 15 14 12 17 17 N 1.46502 * 109.46634 * 180.02562 * 16 15 14 18 18 C 1.38401 * 119.99405 * 180.02562 * 17 16 15 19 19 N 1.32386 * 119.83039 * 359.97438 * 18 17 16 20 20 C 1.31884 * 121.78291 * 179.97438 * 19 18 17 21 21 C 1.38335 * 121.22008 * 0.02562 * 20 19 18 22 22 C 1.38376 * 119.50503 * 359.97438 * 21 20 19 23 23 C 1.39960 * 118.36772 * 359.97438 * 22 21 20 24 24 C 1.43197 * 120.61503 * 179.97438 * 23 22 21 25 25 N 9.82140 * 115.03799 * 278.21212 * 4 1 2 26 26 C 1.38239 * 120.00148 * 0.27740 * 5 4 3 27 27 C 1.38235 * 119.99667 * 359.51222 * 26 5 4 28 28 H 1.08996 * 109.47016 * 90.00031 * 1 2 3 29 29 H 1.09000 * 109.46808 * 210.00263 * 1 2 3 30 30 H 1.08998 * 109.47142 * 330.00135 * 1 2 3 31 31 H 1.07998 * 120.00760 * 359.97438 * 3 2 1 32 32 H 1.08006 * 119.99798 * 179.97438 * 4 3 2 33 33 H 0.97006 * 120.00001 * 359.97438 * 14 12 6 34 34 H 1.09001 * 109.47238 * 59.99863 * 15 14 12 35 35 H 1.08996 * 109.46965 * 300.00181 * 15 14 12 36 36 H 1.08996 * 109.46872 * 60.00004 * 16 15 14 37 37 H 1.08996 * 109.47332 * 299.99876 * 16 15 14 38 38 H 0.96997 * 120.00618 * 359.97438 * 17 16 15 39 39 H 1.08002 * 119.38645 * 180.28197 * 20 19 18 40 40 H 1.08000 * 120.24100 * 179.97438 * 21 20 19 41 41 H 1.08004 * 120.81720 * 180.02562 * 22 21 20 42 42 H 1.07995 * 119.99703 * 179.72539 * 26 5 4 43 43 H 1.07999 * 119.99868 * 180.24740 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0001 0.0020 6 6 5.7787 0.0001 0.0020 7 8 6.2551 -1.1675 -0.6701 8 14 6.3997 1.5202 -0.8780 9 1 7.8847 1.5205 -0.8774 10 1 5.9047 1.5185 -2.2781 11 1 5.9047 2.7335 -0.1794 12 6 6.2810 0.0018 1.4229 13 8 7.0511 -0.8582 1.7949 14 7 5.8744 0.9589 2.2802 15 6 6.3631 0.9609 3.6613 16 6 5.7524 2.1431 4.4167 17 7 6.2416 2.1453 5.7976 18 6 5.8233 3.1277 6.6782 19 7 4.9815 4.0639 6.2690 20 6 4.5576 5.0175 7.0753 21 6 4.9769 5.0821 8.3920 22 6 5.8569 4.1295 8.8746 23 6 6.2937 3.1255 8.0027 24 6 7.2047 2.1158 8.4512 25 7 7.9257 1.3058 8.8078 26 6 3.5805 -1.1971 -0.0028 27 6 2.1982 -1.1972 0.0011 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.6582 2.1325 -0.0004 32 1 4.1205 2.1325 0.0001 33 1 5.2587 1.6470 1.9826 34 1 7.4494 1.0507 3.6622 35 1 6.0751 0.0301 4.1499 36 1 4.6662 2.0527 4.4158 37 1 6.0399 3.0740 3.9282 38 1 6.8580 1.4580 6.0950 39 1 3.8672 5.7593 6.7019 40 1 4.6200 5.8703 9.0385 41 1 6.1977 4.1595 9.8990 42 1 4.1206 -2.1324 -0.0061 43 1 1.6582 -2.1325 0.0014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000918575442.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Mar 25 2020 05:55:45 Heat of formation + Delta-G solvation = -30.279498 kcal Electronic energy + Delta-G solvation = -27814.794126 eV Core-core repulsion = 23823.880242 eV Total energy + Delta-G solvation = -3990.913883 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.36843 -40.77593 -39.69279 -37.67674 -37.50669 -35.41132 -34.84988 -33.47596 -32.06928 -31.91012 -31.54850 -29.31071 -27.88257 -25.73253 -25.37332 -23.81178 -23.40725 -22.99491 -21.96160 -20.72716 -20.06551 -18.78570 -18.09747 -17.50290 -17.07795 -16.75590 -16.55042 -16.38045 -15.94966 -15.78889 -15.64370 -15.19315 -15.09523 -14.91183 -14.74100 -14.52111 -14.24252 -14.17262 -14.14494 -14.04753 -13.86930 -13.52999 -13.11050 -12.99480 -12.95684 -12.79615 -12.71577 -12.31968 -12.19351 -12.00284 -11.72024 -11.33909 -11.30638 -10.93220 -10.75280 -10.48360 -10.04316 -9.68496 -9.20089 -8.83576 -8.37750 -7.78721 -0.20935 0.51383 0.56553 0.66501 1.20121 1.31855 1.45459 1.50645 1.78207 1.93608 1.95685 2.47946 2.72193 2.85904 3.00283 3.09470 3.50996 3.71518 3.94901 3.99792 4.10397 4.16210 4.16859 4.31039 4.33210 4.37968 4.49007 4.63458 4.66199 4.69483 4.81594 4.83372 4.96530 4.97779 5.02010 5.02707 5.12049 5.27604 5.33930 5.44501 5.52335 5.59660 5.69730 5.82403 5.93831 6.07616 6.12256 6.33636 6.41126 6.65625 7.12410 7.41951 7.88191 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011568 B = 0.002957 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.823747 B = 9465.914554 C =10588.078991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.108 4.108 3 C -0.107 4.107 4 C -0.154 4.154 5 C -0.091 4.091 6 C -0.032 4.032 7 O -0.904 6.904 8 Si 0.965 3.035 9 H -0.310 1.310 10 H -0.275 1.275 11 H -0.202 1.202 12 C 0.489 3.511 13 O -0.595 6.595 14 N -0.722 5.722 15 C 0.105 3.895 16 C 0.139 3.861 17 N -0.716 5.716 18 C 0.439 3.561 19 N -0.558 5.558 20 C 0.182 3.818 21 C -0.223 4.223 22 C 0.023 3.977 23 C -0.175 4.175 24 C 0.278 3.722 25 N -0.473 5.473 26 C -0.122 4.122 27 C -0.128 4.128 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.164 0.836 32 H 0.142 0.858 33 H 0.410 0.590 34 H 0.057 0.943 35 H 0.050 0.950 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.407 0.593 39 H 0.197 0.803 40 H 0.179 0.821 41 H 0.166 0.834 42 H 0.072 0.928 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.062 21.300 16.679 30.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.108 4.108 3 C -0.124 4.124 4 C -0.171 4.171 5 C -0.093 4.093 6 C -0.131 4.131 7 O -0.850 6.850 8 Si 0.789 3.211 9 H -0.238 1.238 10 H -0.200 1.200 11 H -0.126 1.126 12 C 0.279 3.721 13 O -0.475 6.475 14 N -0.381 5.381 15 C -0.020 4.020 16 C 0.015 3.985 17 N -0.347 5.347 18 C 0.200 3.800 19 N -0.276 5.276 20 C 0.023 3.977 21 C -0.245 4.245 22 C -0.005 4.005 23 C -0.187 4.187 24 C -0.036 4.036 25 N -0.150 5.150 26 C -0.140 4.140 27 C -0.146 4.146 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.105 0.895 31 H 0.181 0.819 32 H 0.159 0.841 33 H 0.247 0.753 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.244 0.756 39 H 0.214 0.786 40 H 0.197 0.803 41 H 0.183 0.817 42 H 0.091 0.909 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -12.387 19.846 15.850 28.258 hybrid contribution 1.089 -1.484 0.501 1.908 sum -11.298 18.362 16.351 27.059 Atomic orbital electron populations 1.20752 0.88282 1.03720 1.02982 1.20259 0.97818 0.92315 1.00442 1.21324 0.92801 0.98807 0.99500 1.21377 0.95762 0.96781 1.03220 1.21064 0.97113 0.94137 0.96943 1.23549 0.91617 1.07923 0.90012 1.94977 1.83516 1.35284 1.71248 0.86060 0.77669 0.75837 0.81573 1.23844 1.20026 1.12601 1.23709 0.79370 0.79229 0.89786 1.90407 1.38188 1.39793 1.79138 1.46024 1.50102 1.31545 1.10387 1.21355 0.98960 0.98774 0.82900 1.21267 0.99592 0.97271 0.80359 1.44443 1.50342 1.29422 1.10481 1.18291 0.88696 0.87494 0.85547 1.67437 1.15330 1.05748 1.39073 1.23456 0.92578 0.91801 0.89876 1.22192 1.01987 1.02571 0.97731 1.21768 0.90779 0.88633 0.99292 1.16369 1.07250 1.00154 0.94942 1.25961 0.92246 0.92450 0.92935 1.81564 1.12771 1.11610 1.09053 1.20908 0.94635 0.97851 1.00648 1.21206 0.92488 0.99231 1.01717 0.90491 0.91383 0.89484 0.81892 0.84075 0.75284 0.92508 0.93134 0.89624 0.89285 0.75645 0.78630 0.80318 0.81684 0.90916 0.85398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.99 10.01 71.24 0.71 -1.28 16 2 C -0.11 -3.27 5.88 -19.86 -0.12 -3.39 16 3 C -0.11 -3.11 9.70 22.27 0.22 -2.90 16 4 C -0.15 -5.65 7.64 22.27 0.17 -5.48 16 5 C -0.09 -4.55 4.39 -19.87 -0.09 -4.63 16 6 C -0.03 -1.85 0.70 29.10 0.02 -1.83 16 7 O -0.90 -69.32 16.18 -129.99 -2.10 -71.42 16 8 Si 0.96 46.45 24.29 68.60 1.67 48.11 16 9 H -0.31 -16.47 7.11 99.48 0.71 -15.76 16 10 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 11 H -0.20 -6.73 6.38 99.48 0.63 -6.10 16 12 C 0.49 27.33 5.95 87.66 0.52 27.86 16 13 O -0.60 -39.47 16.51 15.95 0.26 -39.20 16 14 N -0.72 -29.07 5.09 -463.05 -2.36 -31.43 16 15 C 0.10 3.50 5.79 86.38 0.50 4.00 16 16 C 0.14 3.29 5.80 86.38 0.50 3.79 16 17 N -0.72 -15.95 5.62 -344.34 -1.93 -17.89 16 18 C 0.44 8.51 7.49 133.62 1.00 9.51 16 19 N -0.56 -9.37 9.55 -192.41 -1.84 -11.21 16 20 C 0.18 1.59 11.16 84.71 0.95 2.54 16 21 C -0.22 -1.21 10.09 22.33 0.23 -0.98 16 22 C 0.02 0.21 9.90 22.72 0.22 0.44 16 23 C -0.18 -2.95 5.77 -21.05 -0.12 -3.07 16 24 C 0.28 6.13 14.14 88.27 1.25 7.38 16 25 N -0.47 -13.07 18.57 19.07 0.35 -12.72 16 26 C -0.12 -6.20 9.35 22.27 0.21 -5.99 16 27 C -0.13 -4.92 9.70 22.27 0.22 -4.71 16 28 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.07 1.25 8.08 -2.39 -0.02 1.23 16 30 H 0.09 1.30 8.09 -2.39 -0.02 1.28 16 31 H 0.16 3.15 8.06 -2.91 -0.02 3.13 16 32 H 0.14 4.36 5.26 -2.91 -0.02 4.34 16 33 H 0.41 13.59 6.72 -92.70 -0.62 12.97 16 34 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.41 9.52 7.31 -92.71 -0.68 8.85 16 39 H 0.20 0.34 8.06 -2.91 -0.02 0.31 16 40 H 0.18 -0.31 8.06 -2.91 -0.02 -0.33 16 41 H 0.17 0.69 8.06 -2.91 -0.02 0.67 16 42 H 0.07 4.37 7.48 -2.91 -0.02 4.34 16 43 H 0.13 4.24 8.06 -2.91 -0.02 4.21 16 Total: -1.00 -100.04 373.80 0.89 -99.14 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 0.46 Total: 15.36 kcal Atomic # 6 Polarization: 14.87 SS G_CDS: 6.39 Total: 21.25 kcal Atomic # 7 Polarization: -67.47 SS G_CDS: -5.77 Total: -73.24 kcal Atomic # 8 Polarization: -108.79 SS G_CDS: -1.84 Total: -110.63 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 1.67 Total: 48.11 kcal Total: -100.04 0.89 -99.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000918575442.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.861 kcal (2) G-P(sol) polarization free energy of solvation -100.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds