Wall clock time and date at job start Wed Mar 25 2020 09:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38234 * 119.99850 * 2 1 4 4 C 1.38232 * 119.99734 * 179.97438 * 3 2 1 5 5 C 1.38242 * 120.00170 * 0.02562 * 4 3 2 6 6 C 1.50690 * 119.99994 * 179.97438 * 5 4 3 7 7 O 1.42900 * 109.46961 * 210.00167 * 6 5 4 8 8 Si 1.86304 * 109.47424 * 329.99947 * 6 5 4 9 9 H 1.48497 * 109.47366 * 180.02562 * 8 6 5 10 10 H 1.48501 * 109.47025 * 300.00626 * 8 6 5 11 11 H 1.48502 * 109.46770 * 60.00124 * 8 6 5 12 12 C 1.50699 * 109.47527 * 90.00135 * 6 5 4 13 13 O 1.21288 * 120.00068 * 124.99519 * 12 6 5 14 14 N 1.34779 * 120.00060 * 304.99983 * 12 6 5 15 15 C 1.46495 * 120.00031 * 179.97438 * 14 12 6 16 16 H 1.09000 * 110.26512 * 32.93470 * 15 14 12 17 17 C 1.54331 * 110.29636 * 154.99834 * 15 14 12 18 18 C 1.54344 * 102.40743 * 145.34901 * 17 15 14 19 19 C 1.51394 * 105.17090 * 333.58932 * 18 17 15 20 20 C 1.38227 * 130.24978 * 197.18775 * 19 18 17 21 21 C 1.39491 * 120.09469 * 180.02562 * 20 19 18 22 22 C 1.43205 * 120.19280 * 180.02562 * 21 20 19 23 23 N 8.55839 * 95.46034 * 104.19541 * 2 1 3 24 24 C 1.39645 * 119.61433 * 0.02562 * 21 20 19 25 25 C 1.37794 * 119.77950 * 0.02562 * 24 21 20 26 26 C 1.38380 * 109.74604 * 17.46856 * 19 18 17 27 27 C 1.38238 * 119.99631 * 0.25629 * 5 4 3 28 28 C 1.38233 * 120.00022 * 359.49544 * 27 5 4 29 29 H 1.09003 * 109.47197 * 90.00038 * 1 2 3 30 30 H 1.08996 * 109.47145 * 210.00081 * 1 2 3 31 31 H 1.08999 * 109.47356 * 330.00005 * 1 2 3 32 32 H 1.07996 * 120.00318 * 359.97438 * 3 2 1 33 33 H 1.07996 * 119.99993 * 180.02562 * 4 3 2 34 34 H 0.97002 * 119.99802 * 359.97438 * 14 12 6 35 35 H 1.08998 * 110.82049 * 27.12667 * 17 15 14 36 36 H 1.08998 * 110.82441 * 263.57457 * 17 15 14 37 37 H 1.09001 * 110.29971 * 214.66513 * 18 17 15 38 38 H 1.08995 * 110.29858 * 92.51694 * 18 17 15 39 39 H 1.08002 * 119.95397 * 0.02746 * 20 19 18 40 40 H 1.08003 * 120.11219 * 180.02562 * 24 21 20 41 41 H 1.08002 * 119.78720 * 179.97438 * 25 24 21 42 42 H 1.07995 * 119.99415 * 179.72349 * 27 5 4 43 43 H 1.07996 * 119.99764 * 180.24918 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2717 -0.0001 0.0005 6 6 5.7786 -0.0001 0.0005 7 8 6.2549 -1.1668 -0.6731 8 14 6.3997 1.5211 -0.8777 9 1 7.8847 1.5208 -0.8782 10 1 5.9046 1.5211 -2.2778 11 1 5.9047 2.7336 -0.1776 12 6 6.2811 -0.0001 1.4213 13 8 7.0512 -0.8606 1.7922 14 7 5.8746 0.9560 2.2799 15 6 6.3625 0.9557 3.6612 16 1 7.3817 0.5712 3.7014 17 6 6.3043 2.3811 4.2499 18 6 5.9536 2.1148 5.7292 19 6 5.2158 0.7928 5.7297 20 6 4.4062 0.2223 6.6939 21 6 3.8248 -1.0257 6.4699 22 6 2.9852 -1.6185 7.4671 23 7 2.3214 -2.0892 8.2594 24 6 4.0663 -1.6937 5.2676 25 6 4.8759 -1.1157 4.3142 26 6 5.4553 0.1233 4.5426 27 6 3.5805 -1.1972 -0.0054 28 6 2.1982 -1.1972 -0.0007 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6582 2.1324 -0.0004 33 1 4.1205 2.1324 0.0010 34 1 5.2589 1.6444 1.9832 35 1 5.5236 2.9683 3.7664 36 1 7.2719 2.8756 4.1641 37 1 5.3110 2.9068 6.1139 38 1 6.8627 2.0410 6.3259 39 1 4.2234 0.7436 7.6220 40 1 3.6199 -2.6602 5.0856 41 1 5.0631 -1.6324 3.3844 42 1 4.1205 -2.1324 -0.0099 43 1 1.6582 -2.1325 -0.0012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000683742890.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Mar 25 2020 09:56:51 Heat of formation + Delta-G solvation = -18.954040 kcal Electronic energy + Delta-G solvation = -28539.573491 eV Core-core repulsion = 24707.314016 eV Total energy + Delta-G solvation = -3832.259474 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.131 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.43079 -38.88859 -37.94700 -36.90159 -35.42449 -33.30482 -32.82319 -31.03217 -30.32564 -29.98024 -29.26429 -27.07042 -26.18829 -23.56866 -23.17935 -21.88970 -21.77967 -20.78449 -20.22645 -18.91489 -18.11925 -16.44348 -16.06171 -15.84271 -15.34501 -14.99201 -14.81703 -14.35018 -14.21018 -14.04492 -13.79676 -13.58884 -13.39332 -13.34938 -13.19721 -12.90715 -12.67015 -12.55270 -12.47011 -12.36140 -11.97608 -11.88736 -11.79773 -11.69346 -11.45121 -11.21612 -10.93085 -10.81729 -10.50697 -10.38987 -10.31600 -9.86966 -9.54748 -8.91478 -8.84641 -8.55573 -8.29691 -8.14247 -7.58137 -6.02272 -5.49975 0.77188 1.35382 2.11484 2.21814 2.59674 2.91419 3.16727 3.29404 3.37923 3.78171 3.81991 3.85182 4.12409 4.41997 4.43397 4.62777 4.72578 4.87889 5.05597 5.11842 5.19073 5.30149 5.39257 5.43589 5.60197 5.67164 5.70064 5.73412 5.79194 5.83795 5.85360 5.87653 6.09403 6.09831 6.11328 6.16173 6.25971 6.35962 6.37210 6.52313 6.65164 6.74190 6.85508 6.87006 6.92196 7.24067 7.28914 7.37046 7.41589 7.69672 7.89849 8.44653 9.36778 9.92785 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.009888 B = 0.005027 C = 0.003986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2831.093067 B = 5568.488288 C = 7022.874049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.118 4.118 3 C -0.122 4.122 4 C -0.155 4.155 5 C -0.059 4.059 6 C 0.026 3.974 7 O -0.809 6.809 8 Si 0.929 3.071 9 H -0.279 1.279 10 H -0.271 1.271 11 H -0.295 1.295 12 C 0.493 3.507 13 O -0.531 6.531 14 N -0.740 5.740 15 C 0.171 3.829 16 H 0.104 0.896 17 C -0.126 4.126 18 C -0.076 4.076 19 C -0.103 4.103 20 C -0.063 4.063 21 C -0.039 4.039 22 C 0.265 3.735 23 N -0.431 5.431 24 C -0.070 4.070 25 C -0.083 4.083 26 C -0.061 4.061 27 C -0.079 4.079 28 C -0.128 4.128 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.109 0.891 33 H 0.116 0.884 34 H 0.394 0.606 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.127 0.873 40 H 0.132 0.868 41 H 0.137 0.863 42 H 0.128 0.872 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.686 8.941 9.504 14.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.118 4.118 3 C -0.140 4.140 4 C -0.173 4.173 5 C -0.061 4.061 6 C -0.078 4.078 7 O -0.753 6.753 8 Si 0.758 3.242 9 H -0.205 1.205 10 H -0.196 1.196 11 H -0.225 1.225 12 C 0.282 3.718 13 O -0.406 6.406 14 N -0.398 5.398 15 C 0.066 3.934 16 H 0.122 0.878 17 C -0.164 4.164 18 C -0.113 4.113 19 C -0.103 4.103 20 C -0.083 4.083 21 C -0.043 4.043 22 C -0.050 4.050 23 N -0.107 5.107 24 C -0.091 4.091 25 C -0.101 4.101 26 C -0.064 4.064 27 C -0.097 4.097 28 C -0.146 4.146 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.127 0.873 33 H 0.134 0.866 34 H 0.229 0.771 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.145 0.855 40 H 0.150 0.850 41 H 0.155 0.845 42 H 0.146 0.854 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.730 7.984 10.364 14.283 hybrid contribution -0.239 0.283 -0.328 0.495 sum -5.969 8.268 10.036 14.308 Atomic orbital electron populations 1.20668 0.92349 1.01738 1.01348 1.19672 0.95047 0.93545 1.03553 1.20756 0.94018 0.96654 1.02620 1.21217 0.94227 0.98132 1.03751 1.21418 0.99234 0.92053 0.93356 1.22548 0.88672 1.07142 0.89449 1.95090 1.81215 1.30444 1.68532 0.86615 0.80130 0.75071 0.82425 1.20464 1.19558 1.22473 1.23880 0.79810 0.79053 0.89011 1.90463 1.35126 1.36836 1.78150 1.46779 1.50750 1.32973 1.09288 1.20440 0.97588 0.93140 0.82262 0.87785 1.22625 1.03085 0.96034 0.94663 1.21005 0.99590 0.93511 0.97200 1.20418 0.98098 0.97433 0.94375 1.20428 0.95939 0.93195 0.98782 1.15786 1.00486 0.95841 0.92173 1.25715 0.93034 0.93273 0.92952 1.81210 1.10466 1.08748 1.10268 1.21083 0.97090 0.99492 0.91392 1.20784 0.95233 0.94513 0.99578 1.21373 0.95645 0.94162 0.95177 1.21076 0.92357 0.99542 0.96706 1.21017 0.94595 0.96664 1.02359 0.92137 0.92332 0.92378 0.87303 0.86604 0.77101 0.90089 0.89626 0.90272 0.89712 0.85504 0.84991 0.84512 0.85432 0.87321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.33 10.01 36.01 0.36 -0.97 16 2 C -0.12 -1.98 5.88 -104.62 -0.62 -2.59 16 3 C -0.12 -2.07 9.70 -39.59 -0.38 -2.45 16 4 C -0.16 -3.00 7.64 -39.58 -0.30 -3.31 16 5 C -0.06 -1.38 4.39 -104.63 -0.46 -1.83 16 6 C 0.03 0.68 0.70 -29.04 -0.02 0.66 16 7 O -0.81 -27.24 16.18 -55.09 -0.89 -28.13 16 8 Si 0.93 21.91 24.29 -169.99 -4.13 17.78 16 9 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.30 -5.65 6.38 56.52 0.36 -5.29 16 12 C 0.49 12.04 5.64 -10.98 -0.06 11.98 16 13 O -0.53 -14.86 15.92 -14.31 -0.23 -15.09 16 14 N -0.74 -13.76 4.63 -53.91 -0.25 -14.01 16 15 C 0.17 2.61 3.20 -68.03 -0.22 2.40 16 16 H 0.10 1.74 7.56 -51.93 -0.39 1.35 16 17 C -0.13 -1.33 6.76 -25.33 -0.17 -1.50 16 18 C -0.08 -0.68 6.77 -26.84 -0.18 -0.86 16 19 C -0.10 -1.20 6.12 -104.23 -0.64 -1.84 16 20 C -0.06 -0.69 9.75 -39.12 -0.38 -1.07 16 21 C -0.04 -0.48 5.73 -106.98 -0.61 -1.10 16 22 C 0.27 3.47 15.33 -22.48 -0.34 3.12 16 23 N -0.43 -6.40 18.54 41.83 0.78 -5.62 16 24 C -0.07 -0.93 9.76 -39.22 -0.38 -1.32 16 25 C -0.08 -1.31 9.98 -39.58 -0.39 -1.70 16 26 C -0.06 -0.90 5.81 -104.06 -0.60 -1.51 16 27 C -0.08 -1.79 9.35 -39.58 -0.37 -2.16 16 28 C -0.13 -2.39 9.70 -39.58 -0.38 -2.77 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 31 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 32 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 33 H 0.12 2.05 5.26 -52.49 -0.28 1.77 16 34 H 0.39 6.60 6.67 -40.82 -0.27 6.33 16 35 H 0.08 0.80 7.82 -51.93 -0.41 0.39 16 36 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 40 H 0.13 1.56 8.06 -52.48 -0.42 1.14 16 41 H 0.14 2.58 7.51 -52.49 -0.39 2.19 16 42 H 0.13 3.20 7.48 -52.49 -0.39 2.80 16 43 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 365.63 15.07 5.51 5.51 Total: -1.00 -35.20 365.63 -10.57 -45.77 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -5.19 Total: 2.61 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -6.17 Total: -8.81 kcal Atomic # 7 Polarization: -20.16 SS G_CDS: 0.53 Total: -19.63 kcal Atomic # 8 Polarization: -42.10 SS G_CDS: -1.12 Total: -43.22 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.13 Total: 17.78 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.20 -10.57 -45.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000683742890.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.812 kcal (2) G-P(sol) polarization free energy of solvation -35.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds