Wall clock time and date at job start Wed Mar 25 2020 09:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38234 * 119.99850 * 2 1 4 4 C 1.38232 * 119.99734 * 179.97438 * 3 2 1 5 5 C 1.38242 * 120.00170 * 0.02562 * 4 3 2 6 6 C 1.50690 * 119.99994 * 179.97438 * 5 4 3 7 7 O 1.42900 * 109.46961 * 210.00167 * 6 5 4 8 8 Si 1.86304 * 109.47424 * 329.99947 * 6 5 4 9 9 H 1.48497 * 109.47366 * 180.02562 * 8 6 5 10 10 H 1.48501 * 109.47025 * 300.00626 * 8 6 5 11 11 H 1.48502 * 109.46770 * 60.00124 * 8 6 5 12 12 C 1.50699 * 109.47527 * 90.00135 * 6 5 4 13 13 O 1.21288 * 120.00068 * 124.99519 * 12 6 5 14 14 N 1.34779 * 120.00060 * 304.99983 * 12 6 5 15 15 C 1.46495 * 120.00031 * 179.97438 * 14 12 6 16 16 H 1.09000 * 110.26512 * 32.93470 * 15 14 12 17 17 C 1.54331 * 110.29636 * 154.99834 * 15 14 12 18 18 C 1.54344 * 102.40743 * 145.34901 * 17 15 14 19 19 C 1.51394 * 105.17090 * 333.58932 * 18 17 15 20 20 C 1.38227 * 130.24978 * 197.18775 * 19 18 17 21 21 C 1.39491 * 120.09469 * 180.02562 * 20 19 18 22 22 C 1.43205 * 120.19280 * 180.02562 * 21 20 19 23 23 N 8.55839 * 95.46034 * 104.19541 * 2 1 3 24 24 C 1.39645 * 119.61433 * 0.02562 * 21 20 19 25 25 C 1.37794 * 119.77950 * 0.02562 * 24 21 20 26 26 C 1.38380 * 109.74604 * 17.46856 * 19 18 17 27 27 C 1.38238 * 119.99631 * 0.25629 * 5 4 3 28 28 C 1.38233 * 120.00022 * 359.49544 * 27 5 4 29 29 H 1.09003 * 109.47197 * 90.00038 * 1 2 3 30 30 H 1.08996 * 109.47145 * 210.00081 * 1 2 3 31 31 H 1.08999 * 109.47356 * 330.00005 * 1 2 3 32 32 H 1.07996 * 120.00318 * 359.97438 * 3 2 1 33 33 H 1.07996 * 119.99993 * 180.02562 * 4 3 2 34 34 H 0.97002 * 119.99802 * 359.97438 * 14 12 6 35 35 H 1.08998 * 110.82049 * 27.12667 * 17 15 14 36 36 H 1.08998 * 110.82441 * 263.57457 * 17 15 14 37 37 H 1.09001 * 110.29971 * 214.66513 * 18 17 15 38 38 H 1.08995 * 110.29858 * 92.51694 * 18 17 15 39 39 H 1.08002 * 119.95397 * 0.02746 * 20 19 18 40 40 H 1.08003 * 120.11219 * 180.02562 * 24 21 20 41 41 H 1.08002 * 119.78720 * 179.97438 * 25 24 21 42 42 H 1.07995 * 119.99415 * 179.72349 * 27 5 4 43 43 H 1.07996 * 119.99764 * 180.24918 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2717 -0.0001 0.0005 6 6 5.7786 -0.0001 0.0005 7 8 6.2549 -1.1668 -0.6731 8 14 6.3997 1.5211 -0.8777 9 1 7.8847 1.5208 -0.8782 10 1 5.9046 1.5211 -2.2778 11 1 5.9047 2.7336 -0.1776 12 6 6.2811 -0.0001 1.4213 13 8 7.0512 -0.8606 1.7922 14 7 5.8746 0.9560 2.2799 15 6 6.3625 0.9557 3.6612 16 1 7.3817 0.5712 3.7014 17 6 6.3043 2.3811 4.2499 18 6 5.9536 2.1148 5.7292 19 6 5.2158 0.7928 5.7297 20 6 4.4062 0.2223 6.6939 21 6 3.8248 -1.0257 6.4699 22 6 2.9852 -1.6185 7.4671 23 7 2.3214 -2.0892 8.2594 24 6 4.0663 -1.6937 5.2676 25 6 4.8759 -1.1157 4.3142 26 6 5.4553 0.1233 4.5426 27 6 3.5805 -1.1972 -0.0054 28 6 2.1982 -1.1972 -0.0007 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6582 2.1324 -0.0004 33 1 4.1205 2.1324 0.0010 34 1 5.2589 1.6444 1.9832 35 1 5.5236 2.9683 3.7664 36 1 7.2719 2.8756 4.1641 37 1 5.3110 2.9068 6.1139 38 1 6.8627 2.0410 6.3259 39 1 4.2234 0.7436 7.6220 40 1 3.6199 -2.6602 5.0856 41 1 5.0631 -1.6324 3.3844 42 1 4.1205 -2.1324 -0.0099 43 1 1.6582 -2.1325 -0.0012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000683742890.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Mar 25 2020 09:56:50 Heat of formation + Delta-G solvation = -42.406964 kcal Electronic energy + Delta-G solvation = -28540.590486 eV Core-core repulsion = 24707.314016 eV Total energy + Delta-G solvation = -3833.276469 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.131 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.58874 -40.44334 -39.51700 -38.10196 -36.59382 -34.97188 -34.21857 -32.19664 -32.03704 -31.57596 -30.27951 -28.52203 -27.46939 -25.07892 -24.25301 -23.39422 -22.91171 -22.04265 -21.64805 -20.59119 -19.15774 -17.90074 -17.45166 -17.15638 -16.55299 -16.46971 -16.33288 -15.76688 -15.47695 -15.27195 -15.05850 -14.99256 -14.83879 -14.52364 -14.29169 -14.19881 -14.16206 -13.96589 -13.70712 -13.46775 -13.36719 -13.02533 -12.79122 -12.70581 -12.67113 -12.61248 -12.30738 -12.16304 -11.96665 -11.90414 -11.73942 -11.68830 -11.31174 -10.80815 -9.97592 -9.86553 -9.67526 -9.60608 -9.17785 -8.30778 -7.72202 -0.29768 0.32849 0.58290 0.67991 1.22397 1.35971 1.47316 1.53384 1.82315 2.01418 2.47096 2.70443 2.73672 2.85564 3.11468 3.45065 3.63441 3.92541 4.07846 4.10935 4.16370 4.18202 4.22926 4.31118 4.34811 4.51382 4.60338 4.63798 4.67633 4.71156 4.82705 4.94315 4.95104 4.98973 5.03827 5.09808 5.11353 5.13957 5.24873 5.28038 5.34459 5.35954 5.44951 5.56470 5.70958 5.76294 5.82916 5.83126 6.09523 6.34569 6.36273 6.77919 7.53036 7.96916 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.009888 B = 0.005027 C = 0.003986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2831.093067 B = 5568.488288 C = 7022.874049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.109 4.109 3 C -0.108 4.108 4 C -0.155 4.155 5 C -0.086 4.086 6 C -0.030 4.030 7 O -0.904 6.904 8 Si 0.959 3.041 9 H -0.308 1.308 10 H -0.282 1.282 11 H -0.203 1.203 12 C 0.494 3.506 13 O -0.589 6.589 14 N -0.720 5.720 15 C 0.159 3.841 16 H 0.077 0.923 17 C -0.116 4.116 18 C -0.067 4.067 19 C -0.086 4.086 20 C -0.045 4.045 21 C -0.034 4.034 22 C 0.286 3.714 23 N -0.458 5.458 24 C -0.072 4.072 25 C -0.110 4.110 26 C -0.085 4.085 27 C -0.117 4.117 28 C -0.129 4.129 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.160 0.840 33 H 0.140 0.860 34 H 0.407 0.593 35 H 0.098 0.902 36 H 0.105 0.895 37 H 0.116 0.884 38 H 0.105 0.895 39 H 0.167 0.833 40 H 0.135 0.865 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.049 14.717 12.311 21.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.109 4.109 3 C -0.126 4.126 4 C -0.173 4.173 5 C -0.088 4.088 6 C -0.130 4.130 7 O -0.851 6.851 8 Si 0.783 3.217 9 H -0.236 1.236 10 H -0.208 1.208 11 H -0.127 1.127 12 C 0.284 3.716 13 O -0.469 6.469 14 N -0.376 5.376 15 C 0.054 3.946 16 H 0.095 0.905 17 C -0.154 4.154 18 C -0.104 4.104 19 C -0.087 4.087 20 C -0.065 4.065 21 C -0.037 4.037 22 C -0.029 4.029 23 N -0.134 5.134 24 C -0.093 4.093 25 C -0.129 4.129 26 C -0.087 4.087 27 C -0.136 4.136 28 C -0.147 4.147 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.178 0.822 33 H 0.158 0.842 34 H 0.243 0.757 35 H 0.116 0.884 36 H 0.123 0.877 37 H 0.134 0.866 38 H 0.123 0.877 39 H 0.185 0.815 40 H 0.153 0.847 41 H 0.103 0.897 42 H 0.091 0.909 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -9.158 13.842 13.230 21.225 hybrid contribution 0.730 -1.607 -1.165 2.115 sum -8.428 12.236 12.065 19.139 Atomic orbital electron populations 1.20745 0.88548 1.03578 1.02892 1.20209 0.97645 0.92388 1.00664 1.21285 0.92931 0.98667 0.99722 1.21363 0.95644 0.96912 1.03348 1.21069 0.97318 0.93896 0.96477 1.23451 0.91317 1.07522 0.90667 1.94981 1.83454 1.35251 1.71382 0.86151 0.77825 0.76298 0.81405 1.23621 1.20786 1.12721 1.23413 0.79216 0.79479 0.89464 1.90411 1.37966 1.39316 1.79173 1.46343 1.49738 1.31241 1.10276 1.20828 0.96289 0.97121 0.80354 0.90497 1.22701 1.04981 0.92244 0.95460 1.21120 1.00696 0.92406 0.96143 1.20734 0.97231 0.98224 0.92507 1.20805 0.93898 0.92097 0.99691 1.15750 1.00430 0.96443 0.91103 1.25614 0.92365 0.92512 0.92362 1.81243 1.11374 1.09471 1.11320 1.21019 0.96805 0.99812 0.91642 1.20494 0.97954 0.95791 0.98654 1.21392 0.96305 0.94019 0.97004 1.20855 0.94398 0.97830 1.00513 1.21181 0.92669 0.99029 1.01787 0.90551 0.91498 0.89672 0.82248 0.84226 0.75657 0.88363 0.87681 0.86587 0.87660 0.81543 0.84714 0.89720 0.90896 0.85651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.07 10.01 71.24 0.71 -1.36 16 2 C -0.11 -3.33 5.88 -19.86 -0.12 -3.44 16 3 C -0.11 -3.19 9.70 22.27 0.22 -2.97 16 4 C -0.15 -5.65 7.64 22.27 0.17 -5.48 16 5 C -0.09 -4.21 4.39 -19.87 -0.09 -4.29 16 6 C -0.03 -1.70 0.70 29.10 0.02 -1.68 16 7 O -0.90 -67.87 16.18 -129.99 -2.10 -69.97 16 8 Si 0.96 45.18 24.29 68.60 1.67 46.85 16 9 H -0.31 -15.93 7.11 99.48 0.71 -15.23 16 10 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16 11 H -0.20 -6.56 6.38 99.48 0.63 -5.92 16 12 C 0.49 26.14 5.64 87.66 0.49 26.63 16 13 O -0.59 -36.87 15.92 15.94 0.25 -36.61 16 14 N -0.72 -27.21 4.63 -442.85 -2.05 -29.26 16 15 C 0.16 4.82 3.20 44.93 0.14 4.96 16 16 H 0.08 2.74 7.56 -2.39 -0.02 2.72 16 17 C -0.12 -1.96 6.76 31.50 0.21 -1.74 16 18 C -0.07 -0.82 6.77 30.52 0.21 -0.61 16 19 C -0.09 -1.71 6.12 -19.61 -0.12 -1.83 16 20 C -0.04 -0.80 9.75 22.57 0.22 -0.58 16 21 C -0.03 -0.76 5.73 -21.39 -0.12 -0.89 16 22 C 0.29 6.90 15.33 88.34 1.35 8.26 16 23 N -0.46 -12.80 18.54 19.00 0.35 -12.45 16 24 C -0.07 -2.01 9.76 22.50 0.22 -1.79 16 25 C -0.11 -3.80 9.98 22.27 0.22 -3.58 16 26 C -0.09 -2.51 5.81 -19.50 -0.11 -2.62 16 27 C -0.12 -5.86 9.35 22.27 0.21 -5.65 16 28 C -0.13 -4.91 9.70 22.27 0.22 -4.69 16 29 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.07 1.29 8.09 -2.39 -0.02 1.27 16 31 H 0.08 1.35 8.09 -2.39 -0.02 1.33 16 32 H 0.16 3.18 8.06 -2.91 -0.02 3.15 16 33 H 0.14 4.27 5.26 -2.91 -0.02 4.26 16 34 H 0.41 12.87 6.67 -92.71 -0.62 12.25 16 35 H 0.10 1.37 7.82 -2.39 -0.02 1.35 16 36 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.17 1.77 8.06 -2.91 -0.02 1.74 16 40 H 0.13 3.49 8.06 -2.91 -0.02 3.46 16 41 H 0.08 3.78 7.51 -2.91 -0.02 3.76 16 42 H 0.07 4.30 7.48 -2.91 -0.02 4.28 16 43 H 0.13 4.18 8.06 -2.91 -0.02 4.16 16 Total: -1.00 -94.06 365.63 3.30 -90.76 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 1.12 Total: 14.04 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: 4.06 Total: -3.35 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: -1.70 Total: -41.71 kcal Atomic # 8 Polarization: -104.73 SS G_CDS: -1.85 Total: -106.58 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.67 Total: 46.85 kcal Total: -94.06 3.30 -90.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000683742890.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.354 kcal (2) G-P(sol) polarization free energy of solvation -94.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds