Wall clock time and date at job start Wed Mar 25 2020 10:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38273 * 119.97250 * 2 1 4 4 C 1.38168 * 120.02574 * 179.97438 * 3 2 1 5 5 C 1.38479 * 119.97774 * 0.02562 * 4 3 2 6 6 F 1.35103 * 120.02782 * 180.02562 * 5 4 3 7 7 C 1.38437 * 119.94647 * 359.70977 * 5 4 3 8 8 C 1.38219 * 119.97908 * 179.97438 * 2 1 3 9 9 C 1.50697 * 119.98814 * 0.02562 * 8 2 1 10 10 O 1.42902 * 109.47108 * 68.22285 * 9 8 2 11 11 Si 1.86301 * 109.47021 * 308.22669 * 9 8 2 12 12 H 1.48501 * 109.47007 * 323.95083 * 11 9 8 13 13 H 1.48503 * 109.46954 * 83.95046 * 11 9 8 14 14 H 1.48500 * 109.47263 * 203.94753 * 11 9 8 15 15 C 1.50703 * 109.47338 * 188.22548 * 9 8 2 16 16 O 1.21280 * 119.99647 * 246.22185 * 15 9 8 17 17 N 1.34772 * 119.99862 * 66.22794 * 15 9 8 18 18 C 1.46509 * 124.92905 * 355.90925 * 17 15 9 19 19 C 1.53733 * 105.22175 * 180.02562 * 18 17 15 20 20 C 1.51245 * 104.52805 * 0.02562 * 19 18 17 21 21 C 1.37773 * 130.85469 * 180.02562 * 20 19 18 22 22 C 1.39715 * 120.03147 * 179.76293 * 21 20 19 23 23 C 1.43194 * 120.24978 * 180.23072 * 22 21 20 24 24 N 9.72783 * 107.98912 * 271.95762 * 5 1 2 25 25 C 1.39784 * 119.50124 * 0.48226 * 22 21 20 26 26 C 1.37402 * 120.07642 * 359.49698 * 25 22 21 27 27 C 1.38826 * 108.51204 * 359.97438 * 20 19 18 28 28 H 1.09011 * 109.46831 * 273.78009 * 1 2 3 29 29 H 1.08989 * 109.47750 * 33.78340 * 1 2 3 30 30 H 1.09007 * 109.46900 * 153.78939 * 1 2 3 31 31 H 1.08001 * 119.98541 * 0.02562 * 3 2 1 32 32 H 1.08007 * 120.01467 * 180.02562 * 4 3 2 33 33 H 1.08005 * 120.01400 * 180.28825 * 7 5 4 34 34 H 1.09001 * 110.29369 * 298.97941 * 18 17 15 35 35 H 1.09005 * 110.29097 * 61.10322 * 18 17 15 36 36 H 1.09004 * 110.42159 * 118.76058 * 19 18 17 37 37 H 1.09000 * 110.42929 * 241.11859 * 19 18 17 38 38 H 1.08006 * 119.98634 * 0.02562 * 21 20 19 39 39 H 1.08004 * 119.96323 * 179.77001 * 25 22 21 40 40 H 1.08002 * 119.75818 * 180.25650 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1978 0.0000 4 6 3.5794 1.1991 0.0005 5 6 4.2725 0.0002 0.0005 6 9 5.6235 0.0003 0.0016 7 6 3.5798 -1.1984 0.0061 8 6 2.1976 -1.1973 0.0005 9 6 1.4434 -2.5019 0.0005 10 8 0.7727 -2.6644 -1.2508 11 14 0.1911 -2.4952 1.3799 12 1 0.7505 -1.7764 2.5528 13 1 -1.0449 -1.8106 0.9229 14 1 -0.1304 -3.8934 1.7633 15 6 2.4093 -3.6406 0.2044 16 8 2.5965 -4.4435 -0.6850 17 7 3.0648 -3.7667 1.3752 18 6 2.9863 -2.8160 2.4872 19 6 3.9008 -3.3953 3.5788 20 6 4.4453 -4.6726 2.9792 21 6 5.3125 -5.6115 3.4935 22 6 5.6660 -6.7282 2.7320 23 6 6.5630 -7.7095 3.2638 24 7 7.2756 -0.3157 9.2478 25 6 5.1415 -6.8777 1.4449 26 6 4.2769 -5.9367 0.9400 27 6 3.9174 -4.8208 1.7038 28 1 -0.3633 0.0678 1.0255 29 1 -0.3634 0.8540 -0.5714 30 1 -0.3633 -0.9221 -0.4539 31 1 1.6571 2.1327 0.0004 32 1 4.1188 2.1348 0.0010 33 1 4.1193 -2.1341 0.0108 34 1 3.3460 -1.8362 2.1730 35 1 1.9615 -2.7443 2.8516 36 1 4.7132 -2.7033 3.8010 37 1 3.3277 -3.6100 4.4808 38 1 5.7159 -5.4864 4.4876 39 1 5.4127 -7.7362 0.8483 40 1 3.8715 -6.0594 -0.0534 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001129641862.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Mar 25 2020 10:09:41 Heat of formation + Delta-G solvation = 351.679439 kcal Electronic energy + Delta-G solvation = -28972.532166 eV Core-core repulsion = 24842.428208 eV Total energy + Delta-G solvation = -4130.103957 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.106 amu Computer time = 2.51 seconds Orbital eigenvalues (eV) -49.88028 -41.84637 -40.22047 -38.94065 -37.00145 -34.52840 -33.29291 -32.85805 -31.24768 -30.98917 -29.68273 -28.64972 -27.82079 -26.53337 -24.65399 -24.25346 -23.10778 -22.65597 -21.90854 -19.87035 -19.20303 -18.37973 -18.11171 -17.46940 -17.03492 -16.77843 -16.52977 -16.29120 -15.80141 -15.39954 -15.17754 -14.87556 -14.74037 -14.62628 -14.56876 -14.47965 -14.02703 -13.78291 -13.75037 -13.43920 -13.37631 -13.22044 -13.08010 -12.97234 -12.65105 -12.44771 -12.21703 -11.99933 -11.67033 -11.62971 -11.21682 -10.88858 -10.62994 -10.12384 -9.74103 -9.61958 -9.27232 -8.91951 -8.40217 -7.89655 -6.11610 -5.06358 -5.05879 0.23796 0.40759 0.77263 0.88387 1.05181 1.05528 1.28595 1.40155 2.01264 2.31583 2.48322 2.73685 3.22272 3.36596 3.70685 3.72941 3.90842 4.01609 4.10541 4.14679 4.25471 4.35051 4.38251 4.43110 4.51423 4.62730 4.67023 4.80658 4.84123 4.84793 4.96386 5.08545 5.11558 5.19147 5.23859 5.27758 5.44041 5.49669 5.59238 5.86544 5.91899 5.94088 6.06640 6.08497 6.10986 6.71771 6.84647 7.37899 7.83006 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.007746 B = 0.004838 C = 0.003760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3613.721933 B = 5785.902245 C = 7444.104577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.103 4.103 3 C -0.069 4.069 4 C -0.148 4.148 5 C 0.078 3.922 6 F -0.151 7.151 7 C -0.185 4.185 8 C -0.047 4.047 9 C -0.027 4.027 10 O -0.886 6.886 11 Si 0.960 3.040 12 H -0.189 1.189 13 H -0.237 1.237 14 H -0.327 1.327 15 C 0.465 3.535 16 O -0.608 6.608 17 N -0.547 5.547 18 C 0.076 3.924 19 C -0.060 4.060 20 C -0.054 4.054 21 C -0.247 4.247 22 C -0.184 4.184 23 C -0.248 4.248 24 N 1.000 4.000 25 C -0.304 4.304 26 C -0.075 4.075 27 C -0.100 4.100 28 H 0.091 0.909 29 H 0.099 0.901 30 H 0.054 0.946 31 H 0.186 0.814 32 H 0.180 0.820 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.124 0.876 39 H 0.071 0.929 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.571 37.322 50.503 64.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.104 4.104 3 C -0.087 4.087 4 C -0.166 4.166 5 C 0.059 3.941 6 F -0.129 7.129 7 C -0.205 4.205 8 C -0.048 4.048 9 C -0.124 4.124 10 O -0.833 6.833 11 Si 0.784 3.216 12 H -0.113 1.113 13 H -0.161 1.161 14 H -0.257 1.257 15 C 0.259 3.741 16 O -0.490 6.490 17 N -0.275 5.275 18 C -0.045 4.045 19 C -0.096 4.096 20 C -0.056 4.056 21 C -0.265 4.265 22 C -0.184 4.184 23 C -0.248 4.248 24 N 1.000 4.000 25 C -0.323 4.323 26 C -0.095 4.095 27 C -0.191 4.191 28 H 0.109 0.891 29 H 0.118 0.882 30 H 0.073 0.927 31 H 0.203 0.797 32 H 0.197 0.803 33 H 0.094 0.906 34 H 0.107 0.893 35 H 0.099 0.901 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.142 0.858 39 H 0.089 0.911 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 15.853 37.045 50.287 64.440 hybrid contribution -0.130 -1.227 -2.649 2.922 sum 15.724 35.818 47.638 61.641 Atomic orbital electron populations 1.21308 0.90867 1.04425 1.03106 1.19970 0.97300 0.91990 1.01092 1.21285 0.92907 0.97635 0.96852 1.21293 0.94868 0.96035 1.04384 1.17834 0.76287 0.94716 1.05220 1.91412 1.29665 1.97507 1.94363 1.20958 0.95100 0.96796 1.07638 1.20701 0.92640 0.97752 0.93734 1.23760 0.95108 0.86324 1.07247 1.94964 1.71979 1.90419 1.25933 0.86784 0.82495 0.77089 0.75276 1.11334 1.16097 1.25706 1.24253 0.80807 0.89531 0.79485 1.90326 1.66596 1.47580 1.44456 1.45926 1.43320 1.22353 1.15890 1.22823 1.01682 0.93550 0.86453 1.21148 0.98896 0.92352 0.97241 1.20056 0.96133 0.96958 0.92500 1.19034 1.09768 0.96922 1.00769 1.21238 1.01388 1.00487 0.95322 1.81493 1.22295 0.82854 0.38147 1.99997 0.73394 0.63301 0.63308 1.19357 1.11873 1.02791 0.98283 1.20338 0.97460 0.94564 0.97151 1.17910 1.07277 0.95297 0.98624 0.89101 0.88227 0.92742 0.79715 0.80292 0.90615 0.89265 0.90099 0.85975 0.86231 0.85811 0.91073 0.91742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.96 7.62 71.23 0.54 -5.42 16 2 C -0.10 -4.67 5.51 -19.86 -0.11 -4.78 16 3 C -0.07 -2.24 9.71 22.26 0.22 -2.02 16 4 C -0.15 -4.74 10.03 22.31 0.22 -4.51 16 5 C 0.08 3.42 7.30 22.37 0.16 3.59 16 6 F -0.15 -6.35 17.27 44.97 0.78 -5.58 16 7 C -0.19 -10.42 6.76 22.31 0.15 -10.27 16 8 C -0.05 -2.71 3.81 -19.87 -0.08 -2.79 16 9 C -0.03 -1.86 0.59 29.10 0.02 -1.84 16 10 O -0.89 -75.04 15.92 -130.02 -2.07 -77.11 16 11 Si 0.96 53.58 19.38 68.60 1.33 54.91 16 12 H -0.19 -7.69 5.73 99.48 0.57 -7.12 16 13 H -0.24 -12.03 5.50 99.48 0.55 -11.49 16 14 H -0.33 -20.56 7.11 99.48 0.71 -19.85 16 15 C 0.47 35.63 4.53 87.66 0.40 36.03 16 16 O -0.61 -54.14 14.65 15.93 0.23 -53.91 16 17 N -0.55 -36.40 2.27 -629.36 -1.43 -37.83 16 18 C 0.08 3.70 5.17 86.62 0.45 4.15 16 19 C -0.06 -2.39 6.94 30.27 0.21 -2.18 16 20 C -0.05 -3.12 6.21 -19.66 -0.12 -3.24 16 21 C -0.25 -14.45 9.75 22.52 0.22 -14.23 16 22 C -0.18 -12.40 5.74 -21.30 -0.12 -12.52 16 23 C -0.25 -15.35 25.14 69.06 1.74 -13.61 16 24 N 1.00 -56.33 30.19 37.02 1.12 -55.21 16 25 C -0.30 -22.43 9.73 22.45 0.22 -22.21 16 26 C -0.07 -5.76 9.43 22.48 0.21 -5.55 16 27 C -0.10 -7.01 6.62 38.47 0.25 -6.75 16 28 H 0.09 3.15 6.61 -2.38 -0.02 3.13 16 29 H 0.10 3.31 8.11 -2.39 -0.02 3.29 16 30 H 0.05 3.00 4.14 -2.38 -0.01 2.99 16 31 H 0.19 3.77 8.06 -2.91 -0.02 3.74 16 32 H 0.18 3.81 8.06 -2.91 -0.02 3.78 16 33 H 0.08 5.03 6.03 -2.91 -0.02 5.01 16 34 H 0.09 4.03 5.47 -2.39 -0.01 4.02 16 35 H 0.08 3.68 3.80 -2.38 -0.01 3.67 16 36 H 0.12 3.61 8.14 -2.39 -0.02 3.59 16 37 H 0.12 3.67 8.14 -2.39 -0.02 3.65 16 38 H 0.12 6.00 8.06 -2.91 -0.02 5.97 16 39 H 0.07 5.16 8.06 -2.91 -0.02 5.14 16 40 H 0.06 5.39 6.25 -2.91 -0.02 5.37 16 Total: -1.00 -234.12 347.55 6.13 -227.99 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 1.59 Total: 14.91 kcal Atomic # 6 Polarization: -72.76 SS G_CDS: 4.58 Total: -68.18 kcal Atomic # 7 Polarization: -92.73 SS G_CDS: -0.31 Total: -93.05 kcal Atomic # 8 Polarization: -129.18 SS G_CDS: -1.84 Total: -131.02 kcal Atomic # 9 Polarization: -6.35 SS G_CDS: 0.78 Total: -5.58 kcal Atomic # 14 Polarization: 53.58 SS G_CDS: 1.33 Total: 54.91 kcal Total: -234.12 6.13 -227.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129641862.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 579.672 kcal (2) G-P(sol) polarization free energy of solvation -234.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 345.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -227.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 351.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.51 seconds