Wall clock time and date at job start Wed Mar 25 2020 11:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38267 * 119.97887 * 2 1 4 4 C 1.38176 * 120.03213 * 179.97438 * 3 2 1 5 5 C 1.38480 * 119.97056 * 0.02562 * 4 3 2 6 6 F 1.35101 * 120.02479 * 179.97438 * 5 4 3 7 7 C 1.38448 * 119.94815 * 359.71361 * 5 4 3 8 8 C 1.38214 * 119.97157 * 0.53789 * 7 5 4 9 9 C 1.50697 * 119.98437 * 179.74957 * 8 7 5 10 10 O 1.42903 * 109.47358 * 238.26290 * 9 8 7 11 11 Si 1.86299 * 109.47160 * 358.26219 * 9 8 7 12 12 H 1.48507 * 109.47099 * 175.37544 * 11 9 8 13 13 H 1.48497 * 109.47190 * 295.37252 * 11 9 8 14 14 H 1.48494 * 109.47495 * 55.37584 * 11 9 8 15 15 C 1.50700 * 109.47237 * 118.26084 * 9 8 7 16 16 O 1.21286 * 120.00256 * 124.99645 * 15 9 8 17 17 N 1.34774 * 119.99823 * 305.00118 * 15 9 8 18 18 C 1.46504 * 119.99841 * 180.27141 * 17 15 9 19 19 H 1.08997 * 109.47315 * 324.72855 * 18 17 15 20 20 C 1.53002 * 109.46815 * 84.72803 * 18 17 15 21 21 C 1.50702 * 109.46850 * 204.72532 * 18 17 15 22 22 C 1.38359 * 119.84818 * 319.72261 * 21 18 17 23 23 C 1.37948 * 120.14897 * 179.76780 * 22 21 18 24 24 C 1.39631 * 119.84728 * 0.50809 * 23 22 21 25 25 C 1.43200 * 120.15042 * 179.76686 * 24 23 22 26 26 N 9.00236 * 102.26278 * 84.35869 * 2 1 3 27 27 C 1.39634 * 119.69776 * 359.74966 * 24 23 22 28 28 C 1.37945 * 119.84461 * 359.97438 * 27 24 23 29 29 H 1.08998 * 109.47058 * 273.55374 * 1 2 3 30 30 H 1.09000 * 109.46899 * 33.55616 * 1 2 3 31 31 H 1.09001 * 109.46548 * 153.55025 * 1 2 3 32 32 H 1.08001 * 119.98214 * 359.97438 * 3 2 1 33 33 H 1.08001 * 120.01536 * 180.02562 * 4 3 2 34 34 H 1.07996 * 120.00912 * 180.29103 * 7 5 4 35 35 H 0.97001 * 120.00324 * 359.97438 * 17 15 9 36 36 H 1.08997 * 109.47137 * 59.99942 * 20 18 17 37 37 H 1.09002 * 109.46712 * 180.02562 * 20 18 17 38 38 H 1.08998 * 109.47110 * 299.99697 * 20 18 17 39 39 H 1.07995 * 119.92791 * 0.02562 * 22 21 18 40 40 H 1.08007 * 120.07617 * 180.23697 * 23 22 21 41 41 H 1.08000 * 120.07498 * 179.97438 * 27 24 23 42 42 H 1.08007 * 119.92175 * 180.02562 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1977 0.0000 4 6 3.5797 1.1990 0.0005 5 6 4.2726 0.0000 0.0005 6 9 5.6236 0.0000 0.0005 7 6 3.5797 -1.1987 0.0060 8 6 2.1976 -1.1974 0.0002 9 6 1.4432 -2.5019 0.0004 10 8 0.5961 -2.5625 -1.1488 11 14 2.6524 -3.9185 -0.0441 12 1 1.9149 -5.2025 0.0690 13 1 3.4020 -3.8894 -1.3256 14 1 3.6040 -3.7929 1.0889 15 6 0.6042 -2.5968 1.2486 16 8 -0.5891 -2.7964 1.1635 17 7 1.1798 -2.4597 2.4595 18 6 0.3650 -2.5579 3.6732 19 1 -0.6191 -2.1284 3.4859 20 6 0.2131 -4.0283 4.0678 21 6 1.0374 -1.8044 4.7918 22 6 2.4108 -1.8771 4.9429 23 6 3.0332 -1.1861 5.9618 24 6 2.2728 -0.4206 6.8481 25 6 2.9117 0.2953 7.9111 26 7 3.4191 0.8647 8.7544 27 6 0.8866 -0.3561 6.6929 28 6 0.2779 -1.0475 5.6662 29 1 -0.3633 0.0637 1.0257 30 1 -0.3633 0.8564 -0.5681 31 1 -0.3632 -0.9201 -0.4578 32 1 1.6573 2.1326 -0.0004 33 1 4.1191 2.1346 0.0010 34 1 4.1191 -2.1343 0.0108 35 1 2.1342 -2.3004 2.5277 36 1 1.1972 -4.4578 4.2551 37 1 -0.3935 -4.1014 4.9705 38 1 -0.2732 -4.5733 3.2587 39 1 2.9973 -2.4728 4.2592 40 1 4.1058 -1.2406 6.0764 41 1 0.2925 0.2338 7.3752 42 1 -0.7942 -0.9982 5.5447 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358898061.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Mar 25 2020 11:19:25 Heat of formation + Delta-G solvation = -61.603526 kcal Electronic energy + Delta-G solvation = -29636.306151 eV Core-core repulsion = 25460.969421 eV Total energy + Delta-G solvation = -4175.336730 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.36058 -40.07247 -39.09618 -37.93112 -36.68280 -34.87858 -32.71267 -31.61539 -31.37496 -31.07629 -29.32849 -29.21984 -25.94117 -24.95386 -24.06126 -23.05041 -21.96841 -21.21056 -20.36633 -19.21501 -18.91906 -17.14013 -16.21728 -16.02855 -15.76611 -15.09829 -15.05320 -14.96607 -14.79216 -14.40617 -14.33130 -14.10292 -13.75995 -13.70936 -13.42504 -13.19820 -12.98941 -12.97891 -12.87128 -12.73890 -12.44154 -12.31248 -12.20194 -11.74591 -11.59821 -11.26753 -11.07433 -10.91824 -10.84848 -10.68086 -10.52519 -10.20774 -10.03316 -9.85145 -9.23463 -9.00793 -8.85336 -8.33858 -8.21963 -7.62884 -6.16590 -5.61319 0.55782 1.14126 1.83796 1.94479 2.45965 2.74251 3.11889 3.20944 3.29005 3.64514 3.68831 3.77900 4.01542 4.30889 4.41280 4.59282 4.64916 4.66531 4.86000 5.13045 5.25921 5.34790 5.40035 5.41701 5.51581 5.58627 5.74623 5.80355 5.81195 5.93449 5.99602 6.05006 6.07426 6.08685 6.32357 6.39846 6.41677 6.56001 6.60639 6.62247 6.66325 6.75413 6.81735 7.01942 7.23274 7.27770 7.36067 7.56407 7.86241 8.36013 9.27183 9.77280 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009944 B = 0.004712 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2815.047472 B = 5940.420614 C = 7180.160405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.060 4.060 3 C -0.103 4.103 4 C -0.173 4.173 5 C 0.084 3.916 6 F -0.152 7.152 7 C -0.179 4.179 8 C -0.028 4.028 9 C 0.027 3.973 10 O -0.791 6.791 11 Si 0.921 3.079 12 H -0.276 1.276 13 H -0.268 1.268 14 H -0.293 1.293 15 C 0.496 3.504 16 O -0.529 6.529 17 N -0.744 5.744 18 C 0.172 3.828 19 H 0.097 0.903 20 C -0.159 4.159 21 C -0.046 4.046 22 C -0.115 4.115 23 C -0.063 4.063 24 C -0.041 4.041 25 C 0.260 3.740 26 N -0.427 5.427 27 C -0.066 4.066 28 C -0.111 4.111 29 H 0.050 0.950 30 H 0.044 0.956 31 H 0.130 0.870 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.392 0.608 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.135 0.865 40 H 0.133 0.867 41 H 0.132 0.868 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.397 2.857 11.626 12.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.060 4.060 3 C -0.121 4.121 4 C -0.192 4.192 5 C 0.065 3.935 6 F -0.131 7.131 7 C -0.197 4.197 8 C -0.029 4.029 9 C -0.077 4.077 10 O -0.735 6.735 11 Si 0.750 3.250 12 H -0.202 1.202 13 H -0.193 1.193 14 H -0.222 1.222 15 C 0.285 3.715 16 O -0.403 6.403 17 N -0.403 5.403 18 C 0.067 3.933 19 H 0.115 0.885 20 C -0.217 4.217 21 C -0.048 4.048 22 C -0.133 4.133 23 C -0.084 4.084 24 C -0.044 4.044 25 C -0.055 4.055 26 N -0.102 5.102 27 C -0.087 4.087 28 C -0.129 4.129 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.148 0.852 32 H 0.139 0.861 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.226 0.774 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.152 0.848 40 H 0.151 0.849 41 H 0.150 0.850 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.713 2.906 12.522 13.138 hybrid contribution 0.667 0.223 -0.201 0.731 sum 3.380 3.129 12.321 13.154 Atomic orbital electron populations 1.21230 0.90759 1.06337 1.00852 1.19826 0.97101 0.91433 0.97656 1.20890 0.92891 0.97902 1.00406 1.20812 0.94899 0.96148 1.07372 1.17576 0.76089 0.94703 1.05177 1.91419 1.29766 1.97525 1.94402 1.21036 0.95105 0.96443 1.07137 1.21175 0.91577 0.98851 0.91313 1.22584 0.98215 0.93583 0.93268 1.95069 1.58478 1.89575 1.30397 0.86648 0.77130 0.82890 0.78380 1.20203 1.19270 1.22210 1.23654 0.90252 0.73270 0.84293 1.90466 1.15931 1.47380 1.86525 1.46807 1.11439 1.76919 1.05152 1.19782 0.95876 0.94793 0.82885 0.88542 1.22190 1.02096 0.95594 1.01829 1.20424 0.93939 0.94898 0.95493 1.20978 0.94343 0.99931 0.98052 1.21145 0.99957 0.94249 0.93041 1.15983 0.93128 1.01235 0.94083 1.25812 0.93420 0.93259 0.93039 1.81289 1.08353 1.09731 1.10833 1.21124 0.92293 0.97762 0.97510 1.20982 1.00617 0.96775 0.94568 0.93173 0.93712 0.85166 0.86135 0.85972 0.85935 0.77379 0.92435 0.92022 0.91165 0.84767 0.84918 0.84998 0.84590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.48 36.01 0.31 -2.64 16 2 C -0.06 -1.27 5.74 -104.62 -0.60 -1.87 16 3 C -0.10 -1.83 9.71 -39.59 -0.38 -2.21 16 4 C -0.17 -2.95 10.03 -39.51 -0.40 -3.34 16 5 C 0.08 1.56 7.30 -39.41 -0.29 1.27 16 6 F -0.15 -2.70 17.27 2.25 0.04 -2.66 16 7 C -0.18 -3.67 8.65 -39.51 -0.34 -4.01 16 8 C -0.03 -0.63 4.45 -104.64 -0.47 -1.10 16 9 C 0.03 0.70 0.40 -29.04 -0.01 0.69 16 10 O -0.79 -25.28 14.93 -55.09 -0.82 -26.11 16 11 Si 0.92 21.24 23.35 -169.99 -3.97 17.27 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 14 H -0.29 -5.60 6.98 56.52 0.39 -5.20 16 15 C 0.50 11.53 4.30 -10.99 -0.05 11.48 16 16 O -0.53 -13.92 15.49 -14.31 -0.22 -14.15 16 17 N -0.74 -13.25 4.56 -54.93 -0.25 -13.51 16 18 C 0.17 2.45 2.77 -69.08 -0.19 2.26 16 19 H 0.10 1.48 7.43 -51.93 -0.39 1.10 16 20 C -0.16 -2.07 9.46 37.16 0.35 -1.72 16 21 C -0.05 -0.52 4.96 -104.53 -0.52 -1.04 16 22 C -0.11 -1.20 9.03 -39.64 -0.36 -1.56 16 23 C -0.06 -0.60 9.76 -39.17 -0.38 -0.98 16 24 C -0.04 -0.39 5.73 -106.93 -0.61 -1.01 16 25 C 0.26 2.89 15.33 -22.44 -0.34 2.55 16 26 N -0.43 -5.67 18.54 41.88 0.78 -4.89 16 27 C -0.07 -0.58 9.76 -39.17 -0.38 -0.96 16 28 C -0.11 -1.05 9.65 -39.64 -0.38 -1.43 16 29 H 0.05 1.02 8.13 -51.93 -0.42 0.60 16 30 H 0.04 0.85 8.11 -51.93 -0.42 0.43 16 31 H 0.13 3.48 4.47 -51.93 -0.23 3.25 16 32 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 33 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 34 H 0.12 2.43 4.80 -52.49 -0.25 2.18 16 35 H 0.39 6.36 6.10 -40.82 -0.25 6.11 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.13 1.35 6.92 -52.49 -0.36 0.99 16 40 H 0.13 1.03 8.06 -52.48 -0.42 0.60 16 41 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 42 H 0.14 1.07 8.03 -52.48 -0.42 0.65 16 LS Contribution 361.49 15.07 5.45 5.45 Total: -1.00 -32.84 361.49 -8.56 -41.40 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -4.51 Total: 2.82 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -5.05 Total: -5.62 kcal Atomic # 7 Polarization: -18.92 SS G_CDS: 0.53 Total: -18.40 kcal Atomic # 8 Polarization: -39.21 SS G_CDS: -1.04 Total: -40.25 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.04 Total: -2.66 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -3.97 Total: 17.27 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.84 -8.56 -41.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358898061.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.204 kcal (2) G-P(sol) polarization free energy of solvation -32.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds