Wall clock time and date at job start Wed Mar 25 2020 12:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38227 * 120.00074 * 2 1 4 4 C 1.38235 * 120.00172 * 179.97438 * 3 2 1 5 5 C 1.38232 * 119.99857 * 359.97438 * 4 3 2 6 6 C 1.50697 * 119.99878 * 180.02562 * 5 4 3 7 7 O 1.42908 * 109.47098 * 209.99635 * 6 5 4 8 8 Si 1.86301 * 109.47246 * 329.99681 * 6 5 4 9 9 H 1.48505 * 109.47100 * 180.02562 * 8 6 5 10 10 H 1.48498 * 109.46925 * 299.99788 * 8 6 5 11 11 H 1.48496 * 109.47162 * 60.00241 * 8 6 5 12 12 C 1.50701 * 109.47542 * 89.99914 * 6 5 4 13 13 O 1.21284 * 120.00378 * 124.99696 * 12 6 5 14 14 N 1.34777 * 119.99533 * 304.99767 * 12 6 5 15 15 C 1.39551 * 119.99737 * 185.51007 * 14 12 6 16 16 C 1.39124 * 119.92263 * 24.90103 * 15 14 12 17 17 C 1.37674 * 120.08095 * 180.29673 * 16 15 14 18 18 C 1.39792 * 119.92024 * 359.71936 * 17 16 15 19 19 C 1.43196 * 120.07880 * 180.02562 * 18 17 16 20 20 N 9.80205 * 118.76374 * 279.93399 * 4 1 2 21 21 C 1.39756 * 119.83991 * 0.02562 * 18 17 16 22 22 C 1.37718 * 119.91863 * 0.02562 * 21 18 17 23 23 C 1.50701 * 119.96055 * 180.02562 * 22 21 18 24 24 C 1.53001 * 117.50025 * 59.99470 * 23 22 21 25 25 C 1.53000 * 60.03117 * 252.52540 * 24 23 22 26 26 C 1.38230 * 119.99977 * 0.27144 * 5 4 3 27 27 C 1.38236 * 119.99804 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.46874 * 90.00378 * 1 2 3 29 29 H 1.09001 * 109.47169 * 210.00549 * 1 2 3 30 30 H 1.09003 * 109.47236 * 330.00332 * 1 2 3 31 31 H 1.08006 * 120.00042 * 359.97222 * 3 2 1 32 32 H 1.08008 * 120.00076 * 179.97438 * 4 3 2 33 33 H 0.96995 * 120.00575 * 5.51525 * 14 12 6 34 34 H 1.08005 * 119.95743 * 359.97438 * 16 15 14 35 35 H 1.07997 * 120.03976 * 179.70494 * 17 16 15 36 36 H 1.08001 * 120.04103 * 180.02562 * 21 18 17 37 37 H 1.08997 * 115.56202 * 205.68889 * 23 22 21 38 38 H 1.08997 * 117.49919 * 145.02236 * 24 23 22 39 39 H 1.09000 * 117.49626 * 0.02562 * 24 23 22 40 40 H 1.09004 * 117.49997 * 107.48195 * 25 24 23 41 41 H 1.08997 * 117.49757 * 252.47299 * 25 24 23 42 42 H 1.08003 * 119.99882 * 179.72877 * 26 5 4 43 43 H 1.07997 * 120.00463 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2717 0.0000 0.0016 6 6 5.7787 0.0000 0.0028 7 8 6.2555 -1.1672 -0.6699 8 14 6.4004 1.5207 -0.8757 9 1 7.8854 1.5204 -0.8751 10 1 5.9065 1.5199 -2.2762 11 1 5.9049 2.7335 -0.1767 12 6 6.2800 0.0007 1.4239 13 8 7.0498 -0.8596 1.7959 14 7 5.8728 0.9572 2.2816 15 6 6.4235 1.0267 3.5620 16 6 7.6913 0.5061 3.8013 17 6 8.2353 0.5675 5.0645 18 6 7.5146 1.1590 6.1061 19 6 8.0773 1.2251 7.4212 20 7 8.5239 1.2831 8.4643 21 6 6.2435 1.6856 5.8608 22 6 5.7053 1.6198 4.5949 23 6 4.3350 2.1879 4.3291 24 6 4.1246 3.6796 4.5968 25 6 3.5112 2.6403 5.5374 26 6 3.5805 -1.1971 -0.0035 27 6 2.1982 -1.1972 0.0005 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 1.6582 2.1324 -0.0005 32 1 4.1206 2.1325 0.0001 33 1 5.1969 1.5973 2.0091 34 1 8.2473 0.0487 2.9962 35 1 9.2175 0.1589 5.2506 36 1 5.6840 2.1437 6.6630 37 1 3.7974 1.7464 3.4900 38 1 3.4486 4.2194 3.9338 39 1 4.9774 4.2500 4.9647 40 1 3.9606 2.5269 6.5239 41 1 2.4316 2.4968 5.4933 42 1 4.1206 -2.1324 -0.0071 43 1 1.6582 -2.1325 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001626791761.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Mar 25 2020 12:53:55 Heat of formation + Delta-G solvation = 12.923468 kcal Electronic energy + Delta-G solvation = -28314.844997 eV Core-core repulsion = 24483.967835 eV Total energy + Delta-G solvation = -3830.877162 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.131 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.45143 -38.94873 -38.10301 -37.09456 -35.96357 -34.12039 -33.38922 -30.61169 -30.45346 -30.26027 -29.62695 -26.64836 -24.57983 -24.15779 -22.66548 -22.26274 -21.96952 -20.77258 -20.47779 -19.11400 -18.35424 -17.34938 -16.47163 -15.71987 -15.28411 -14.97332 -14.83616 -14.44286 -14.26808 -14.15329 -13.89062 -13.80465 -13.57268 -13.42088 -13.34982 -12.77286 -12.75507 -12.67563 -12.46765 -12.44749 -12.02765 -11.92380 -11.74705 -11.48276 -11.36178 -11.07758 -10.71398 -10.64370 -10.50988 -10.46603 -10.41368 -10.06546 -9.89620 -9.69343 -9.03578 -8.62163 -8.25598 -7.74408 -7.61807 -6.20883 -5.68412 0.94306 1.43166 1.98702 2.10370 2.74514 2.91992 3.08122 3.17568 3.28081 3.63307 3.72697 3.75964 4.03113 4.13893 4.33462 4.49672 4.53038 4.78058 4.92178 4.96990 5.09703 5.29912 5.34749 5.38441 5.54781 5.56600 5.60060 5.68943 5.70631 5.78130 5.80659 5.92097 6.01199 6.02309 6.06122 6.08123 6.21974 6.30521 6.36879 6.43511 6.48810 6.63981 6.72457 6.75821 6.81067 7.12011 7.25371 7.28529 7.57008 7.57955 7.77600 8.04711 9.01301 9.69383 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.011711 B = 0.004462 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2390.402853 B = 6273.595965 C = 7562.928259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.116 4.116 3 C -0.122 4.122 4 C -0.158 4.158 5 C -0.067 4.067 6 C 0.025 3.975 7 O -0.802 6.802 8 Si 0.931 3.069 9 H -0.274 1.274 10 H -0.265 1.265 11 H -0.292 1.292 12 C 0.487 3.513 13 O -0.502 6.502 14 N -0.680 5.680 15 C 0.215 3.785 16 C -0.144 4.144 17 C -0.045 4.045 18 C -0.078 4.078 19 C 0.270 3.730 20 N -0.444 5.444 21 C -0.045 4.045 22 C -0.105 4.105 23 C -0.115 4.115 24 C -0.170 4.170 25 C -0.174 4.174 26 C -0.076 4.076 27 C -0.128 4.128 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.111 0.889 32 H 0.118 0.882 33 H 0.408 0.592 34 H 0.159 0.841 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.116 0.884 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.130 0.870 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.765 8.964 6.372 14.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.116 4.116 3 C -0.140 4.140 4 C -0.176 4.176 5 C -0.068 4.068 6 C -0.078 4.078 7 O -0.745 6.745 8 Si 0.758 3.242 9 H -0.200 1.200 10 H -0.189 1.189 11 H -0.222 1.222 12 C 0.278 3.722 13 O -0.374 6.374 14 N -0.327 5.327 15 C 0.114 3.886 16 C -0.164 4.164 17 C -0.067 4.067 18 C -0.083 4.083 19 C -0.044 4.044 20 N -0.120 5.120 21 C -0.066 4.066 22 C -0.109 4.109 23 C -0.134 4.134 24 C -0.207 4.207 25 C -0.211 4.211 26 C -0.094 4.094 27 C -0.146 4.146 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.129 0.871 32 H 0.136 0.864 33 H 0.245 0.755 34 H 0.177 0.823 35 H 0.149 0.851 36 H 0.148 0.852 37 H 0.134 0.866 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.116 0.884 42 H 0.147 0.853 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -7.125 8.802 7.487 13.575 hybrid contribution -0.677 0.078 -0.405 0.792 sum -7.802 8.880 7.082 13.779 Atomic orbital electron populations 1.20681 0.92177 1.01837 1.01487 1.19712 0.95182 0.93505 1.03162 1.20772 0.93919 0.96770 1.02554 1.21248 0.94382 0.98077 1.03928 1.21393 0.99025 0.92248 0.94169 1.22671 0.89020 1.07721 0.88436 1.95117 1.81135 1.30315 1.67964 0.86535 0.80396 0.74549 0.82701 1.19987 1.18923 1.22168 1.24551 0.80342 0.78225 0.89041 1.90430 1.34154 1.35838 1.77026 1.44771 1.42574 1.34075 1.11271 1.18144 0.91314 0.93485 0.85621 1.21492 0.94274 1.02397 0.98286 1.21024 0.99066 0.95352 0.91214 1.15823 0.96335 1.09480 0.86691 1.25772 0.93088 0.92880 0.92693 1.81214 1.08988 1.10110 1.11672 1.20661 0.92956 0.97028 0.96003 1.18655 0.95036 1.05075 0.92084 1.20894 0.93960 0.97193 1.01308 1.23070 1.03350 0.91166 1.03116 1.23044 0.99483 1.03713 0.94832 1.21111 0.92477 0.99567 0.96288 1.21052 0.94552 0.96816 1.02146 0.92015 0.92233 0.92276 0.87064 0.86450 0.75521 0.82335 0.85083 0.85217 0.86566 0.88325 0.88480 0.88481 0.88378 0.85257 0.87103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 10.01 36.01 0.36 -0.87 16 2 C -0.12 -1.83 5.88 -104.62 -0.62 -2.44 16 3 C -0.12 -1.94 9.70 -39.59 -0.38 -2.32 16 4 C -0.16 -2.92 7.56 -39.58 -0.30 -3.22 16 5 C -0.07 -1.51 4.37 -104.63 -0.46 -1.97 16 6 C 0.03 0.65 0.70 -29.04 -0.02 0.63 16 7 O -0.80 -26.29 16.18 -55.09 -0.89 -27.18 16 8 Si 0.93 21.25 24.39 -169.99 -4.15 17.10 16 9 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.26 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.29 -5.44 6.38 56.52 0.36 -5.08 16 12 C 0.49 11.75 5.74 -10.98 -0.06 11.69 16 13 O -0.50 -13.61 13.65 -14.31 -0.20 -13.81 16 14 N -0.68 -12.92 4.57 -9.84 -0.04 -12.96 16 15 C 0.21 3.64 6.41 -83.70 -0.54 3.11 16 16 C -0.14 -2.46 8.69 -39.46 -0.34 -2.80 16 17 C -0.05 -0.64 9.75 -39.21 -0.38 -1.02 16 18 C -0.08 -1.04 5.74 -106.82 -0.61 -1.65 16 19 C 0.27 3.74 15.33 -22.47 -0.34 3.39 16 20 N -0.44 -6.87 18.54 41.84 0.78 -6.10 16 21 C -0.05 -0.56 8.99 -39.20 -0.35 -0.92 16 22 C -0.11 -1.45 5.62 -104.50 -0.59 -2.04 16 23 C -0.12 -1.36 5.41 -91.73 -0.50 -1.86 16 24 C -0.17 -1.61 10.16 -26.73 -0.27 -1.88 16 25 C -0.17 -1.63 9.86 -26.69 -0.26 -1.89 16 26 C -0.08 -1.69 9.35 -39.58 -0.37 -2.06 16 27 C -0.13 -2.28 9.70 -39.58 -0.38 -2.67 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 30 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 31 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16 32 H 0.12 1.97 5.29 -52.48 -0.28 1.69 16 33 H 0.41 6.83 5.63 -40.82 -0.23 6.60 16 34 H 0.16 3.11 5.77 -52.48 -0.30 2.80 16 35 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 36 H 0.13 1.32 6.01 -52.49 -0.32 1.00 16 37 H 0.12 1.47 7.15 -51.93 -0.37 1.10 16 38 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.10 0.84 6.17 -51.93 -0.32 0.52 16 41 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.13 3.18 7.48 -52.48 -0.39 2.78 16 43 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 363.32 15.07 5.48 5.48 Total: -1.00 -33.10 363.32 -10.30 -43.40 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -4.85 Total: 4.85 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: -6.42 Total: -10.78 kcal Atomic # 7 Polarization: -19.79 SS G_CDS: 0.73 Total: -19.06 kcal Atomic # 8 Polarization: -39.90 SS G_CDS: -1.09 Total: -40.98 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.15 Total: 17.10 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.10 -10.30 -43.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626791761.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.322 kcal (2) G-P(sol) polarization free energy of solvation -33.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds