Wall clock time and date at job start Wed Mar 25 2020 12:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38227 * 120.00074 * 2 1 4 4 C 1.38235 * 120.00172 * 179.97438 * 3 2 1 5 5 C 1.38232 * 119.99857 * 359.97438 * 4 3 2 6 6 C 1.50697 * 119.99878 * 180.02562 * 5 4 3 7 7 O 1.42908 * 109.47098 * 209.99635 * 6 5 4 8 8 Si 1.86301 * 109.47246 * 329.99681 * 6 5 4 9 9 H 1.48505 * 109.47100 * 180.02562 * 8 6 5 10 10 H 1.48498 * 109.46925 * 299.99788 * 8 6 5 11 11 H 1.48496 * 109.47162 * 60.00241 * 8 6 5 12 12 C 1.50701 * 109.47542 * 89.99914 * 6 5 4 13 13 O 1.21284 * 120.00378 * 124.99696 * 12 6 5 14 14 N 1.34777 * 119.99533 * 304.99767 * 12 6 5 15 15 C 1.39551 * 119.99737 * 185.51007 * 14 12 6 16 16 C 1.39124 * 119.92263 * 24.90103 * 15 14 12 17 17 C 1.37674 * 120.08095 * 180.29673 * 16 15 14 18 18 C 1.39792 * 119.92024 * 359.71936 * 17 16 15 19 19 C 1.43196 * 120.07880 * 180.02562 * 18 17 16 20 20 N 9.80205 * 118.76374 * 279.93399 * 4 1 2 21 21 C 1.39756 * 119.83991 * 0.02562 * 18 17 16 22 22 C 1.37718 * 119.91863 * 0.02562 * 21 18 17 23 23 C 1.50701 * 119.96055 * 180.02562 * 22 21 18 24 24 C 1.53001 * 117.50025 * 59.99470 * 23 22 21 25 25 C 1.53000 * 60.03117 * 252.52540 * 24 23 22 26 26 C 1.38230 * 119.99977 * 0.27144 * 5 4 3 27 27 C 1.38236 * 119.99804 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.46874 * 90.00378 * 1 2 3 29 29 H 1.09001 * 109.47169 * 210.00549 * 1 2 3 30 30 H 1.09003 * 109.47236 * 330.00332 * 1 2 3 31 31 H 1.08006 * 120.00042 * 359.97222 * 3 2 1 32 32 H 1.08008 * 120.00076 * 179.97438 * 4 3 2 33 33 H 0.96995 * 120.00575 * 5.51525 * 14 12 6 34 34 H 1.08005 * 119.95743 * 359.97438 * 16 15 14 35 35 H 1.07997 * 120.03976 * 179.70494 * 17 16 15 36 36 H 1.08001 * 120.04103 * 180.02562 * 21 18 17 37 37 H 1.08997 * 115.56202 * 205.68889 * 23 22 21 38 38 H 1.08997 * 117.49919 * 145.02236 * 24 23 22 39 39 H 1.09000 * 117.49626 * 0.02562 * 24 23 22 40 40 H 1.09004 * 117.49997 * 107.48195 * 25 24 23 41 41 H 1.08997 * 117.49757 * 252.47299 * 25 24 23 42 42 H 1.08003 * 119.99882 * 179.72877 * 26 5 4 43 43 H 1.07997 * 120.00463 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2717 0.0000 0.0016 6 6 5.7787 0.0000 0.0028 7 8 6.2555 -1.1672 -0.6699 8 14 6.4004 1.5207 -0.8757 9 1 7.8854 1.5204 -0.8751 10 1 5.9065 1.5199 -2.2762 11 1 5.9049 2.7335 -0.1767 12 6 6.2800 0.0007 1.4239 13 8 7.0498 -0.8596 1.7959 14 7 5.8728 0.9572 2.2816 15 6 6.4235 1.0267 3.5620 16 6 7.6913 0.5061 3.8013 17 6 8.2353 0.5675 5.0645 18 6 7.5146 1.1590 6.1061 19 6 8.0773 1.2251 7.4212 20 7 8.5239 1.2831 8.4643 21 6 6.2435 1.6856 5.8608 22 6 5.7053 1.6198 4.5949 23 6 4.3350 2.1879 4.3291 24 6 4.1246 3.6796 4.5968 25 6 3.5112 2.6403 5.5374 26 6 3.5805 -1.1971 -0.0035 27 6 2.1982 -1.1972 0.0005 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 1.6582 2.1324 -0.0005 32 1 4.1206 2.1325 0.0001 33 1 5.1969 1.5973 2.0091 34 1 8.2473 0.0487 2.9962 35 1 9.2175 0.1589 5.2506 36 1 5.6840 2.1437 6.6630 37 1 3.7974 1.7464 3.4900 38 1 3.4486 4.2194 3.9338 39 1 4.9774 4.2500 4.9647 40 1 3.9606 2.5269 6.5239 41 1 2.4316 2.4968 5.4933 42 1 4.1206 -2.1324 -0.0071 43 1 1.6582 -2.1325 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001626791761.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Mar 25 2020 12:53:54 Heat of formation + Delta-G solvation = -7.221560 kcal Electronic energy + Delta-G solvation = -28315.718551 eV Core-core repulsion = 24483.967835 eV Total energy + Delta-G solvation = -3831.750716 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.131 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.83606 -40.35846 -39.59172 -38.09764 -37.11996 -35.69773 -34.91853 -32.11465 -31.73079 -31.66046 -31.06709 -28.15981 -26.01644 -25.22300 -23.96465 -23.41695 -23.05678 -22.06265 -21.74048 -20.72650 -19.40845 -18.76368 -18.03777 -17.13270 -16.51937 -16.40698 -15.94038 -15.78079 -15.60113 -15.48626 -15.21977 -15.05971 -14.93851 -14.74840 -14.53953 -14.26019 -14.18742 -13.87523 -13.79738 -13.61424 -13.40196 -13.00355 -12.83779 -12.66647 -12.34467 -12.26913 -12.24307 -12.10907 -12.03298 -11.75785 -11.59251 -11.42881 -11.34214 -11.19947 -10.81561 -9.75387 -9.70166 -9.23493 -8.97397 -8.41991 -7.83377 -0.28237 0.29724 0.53844 0.64939 1.18649 1.26925 1.41772 1.59733 1.67261 2.03863 2.19739 2.53427 2.76949 2.85645 3.04590 3.20683 3.55244 3.77450 3.98394 4.08501 4.12143 4.15547 4.20675 4.29089 4.32788 4.38861 4.45279 4.55889 4.63268 4.68141 4.79887 4.85031 4.90845 4.97396 5.00892 5.05684 5.11257 5.15262 5.24158 5.32012 5.32662 5.38351 5.41269 5.43178 5.46834 5.67308 5.81825 5.90238 6.04673 6.31482 6.43528 6.48695 7.25946 7.77591 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.011711 B = 0.004462 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2390.402853 B = 6273.595965 C = 7562.928259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.105 4.105 3 C -0.106 4.106 4 C -0.157 4.157 5 C -0.095 4.095 6 C -0.025 4.025 7 O -0.894 6.894 8 Si 0.958 3.042 9 H -0.304 1.304 10 H -0.272 1.272 11 H -0.209 1.209 12 C 0.488 3.512 13 O -0.555 6.555 14 N -0.665 5.665 15 C 0.181 3.819 16 C -0.164 4.164 17 C -0.042 4.042 18 C -0.063 4.063 19 C 0.290 3.710 20 N -0.464 5.464 21 C -0.035 4.035 22 C -0.087 4.087 23 C -0.147 4.147 24 C -0.154 4.154 25 C -0.159 4.159 26 C -0.117 4.117 27 C -0.128 4.128 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.163 0.837 32 H 0.139 0.861 33 H 0.419 0.581 34 H 0.122 0.878 35 H 0.147 0.853 36 H 0.165 0.835 37 H 0.106 0.894 38 H 0.115 0.885 39 H 0.103 0.897 40 H 0.108 0.892 41 H 0.111 0.889 42 H 0.076 0.924 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.933 13.669 8.760 20.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.105 4.105 3 C -0.124 4.124 4 C -0.175 4.175 5 C -0.096 4.096 6 C -0.125 4.125 7 O -0.840 6.840 8 Si 0.781 3.219 9 H -0.232 1.232 10 H -0.197 1.197 11 H -0.133 1.133 12 C 0.280 3.720 13 O -0.432 6.432 14 N -0.312 5.312 15 C 0.083 3.917 16 C -0.185 4.185 17 C -0.063 4.063 18 C -0.068 4.068 19 C -0.024 4.024 20 N -0.140 5.140 21 C -0.055 4.055 22 C -0.090 4.090 23 C -0.165 4.165 24 C -0.191 4.191 25 C -0.196 4.196 26 C -0.136 4.136 27 C -0.146 4.146 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.105 0.895 31 H 0.180 0.820 32 H 0.157 0.843 33 H 0.258 0.742 34 H 0.140 0.860 35 H 0.165 0.835 36 H 0.182 0.818 37 H 0.124 0.876 38 H 0.133 0.867 39 H 0.122 0.878 40 H 0.126 0.874 41 H 0.129 0.871 42 H 0.094 0.906 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.348 13.583 9.941 20.300 hybrid contribution 0.547 -1.402 -1.021 1.819 sum -10.801 12.181 8.920 18.564 Atomic orbital electron populations 1.20764 0.88352 1.03764 1.02975 1.20249 0.97765 0.92311 1.00181 1.21300 0.92722 0.98816 0.99526 1.21378 0.95842 0.96766 1.03480 1.21036 0.96995 0.94152 0.97444 1.23493 0.91728 1.07906 0.89326 1.95008 1.83358 1.34877 1.70755 0.86124 0.78170 0.75709 0.81915 1.23171 1.19706 1.13311 1.24075 0.79729 0.78705 0.89514 1.90396 1.36576 1.38161 1.78026 1.44137 1.42409 1.33046 1.11631 1.18341 0.91923 0.95986 0.85464 1.21266 0.94978 1.03588 0.98663 1.21070 0.99844 0.95209 0.90212 1.15812 0.96502 1.08480 0.85985 1.25585 0.92416 0.92167 0.92271 1.81254 1.09585 1.10767 1.12419 1.20984 0.92429 0.95914 0.96183 1.18843 0.95709 1.03142 0.91290 1.20894 0.93010 0.99556 1.03060 1.23195 1.03606 0.89509 1.02744 1.23187 0.99988 1.02163 0.94251 1.20908 0.94581 0.97854 1.00226 1.21228 0.92572 0.99233 1.01535 0.90551 0.91313 0.89492 0.81983 0.84337 0.74180 0.85989 0.83514 0.81776 0.87624 0.86673 0.87847 0.87410 0.87061 0.90560 0.85327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.84 10.01 71.24 0.71 -1.13 16 2 C -0.11 -2.95 5.88 -19.87 -0.12 -3.07 16 3 C -0.11 -2.87 9.70 22.27 0.22 -2.65 16 4 C -0.16 -5.43 7.56 22.27 0.17 -5.26 16 5 C -0.10 -4.46 4.37 -19.87 -0.09 -4.55 16 6 C -0.02 -1.37 0.70 29.10 0.02 -1.35 16 7 O -0.89 -65.07 16.18 -129.99 -2.10 -67.17 16 8 Si 0.96 44.20 24.39 68.60 1.67 45.87 16 9 H -0.30 -15.40 7.11 99.48 0.71 -14.69 16 10 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 11 H -0.21 -6.79 6.38 99.48 0.63 -6.15 16 12 C 0.49 25.46 5.74 87.66 0.50 25.96 16 13 O -0.55 -33.49 13.65 15.95 0.22 -33.28 16 14 N -0.66 -25.95 4.57 -303.44 -1.39 -27.34 16 15 C 0.18 6.24 6.41 38.33 0.25 6.48 16 16 C -0.16 -5.94 8.69 22.35 0.19 -5.74 16 17 C -0.04 -1.19 9.75 22.51 0.22 -0.97 16 18 C -0.06 -1.54 5.74 -21.29 -0.12 -1.66 16 19 C 0.29 7.29 15.33 88.33 1.35 8.65 16 20 N -0.46 -13.32 18.54 19.01 0.35 -12.97 16 21 C -0.03 -0.74 8.99 22.51 0.20 -0.54 16 22 C -0.09 -2.21 5.62 -19.78 -0.11 -2.33 16 23 C -0.15 -2.95 5.41 -11.51 -0.06 -3.01 16 24 C -0.15 -2.10 10.16 30.59 0.31 -1.79 16 25 C -0.16 -2.17 9.86 30.62 0.30 -1.86 16 26 C -0.12 -5.62 9.35 22.27 0.21 -5.41 16 27 C -0.13 -4.59 9.70 22.27 0.22 -4.37 16 28 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.07 1.16 8.09 -2.39 -0.02 1.14 16 30 H 0.09 1.16 8.09 -2.39 -0.02 1.14 16 31 H 0.16 2.83 8.06 -2.91 -0.02 2.81 16 32 H 0.14 4.06 5.29 -2.91 -0.02 4.04 16 33 H 0.42 13.68 5.63 -92.71 -0.52 13.16 16 34 H 0.12 5.37 5.77 -2.91 -0.02 5.35 16 35 H 0.15 3.56 8.06 -2.91 -0.02 3.53 16 36 H 0.16 2.46 6.01 -2.91 -0.02 2.44 16 37 H 0.11 2.37 7.15 -2.39 -0.02 2.35 16 38 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.11 1.24 6.17 -2.39 -0.01 1.22 16 41 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.08 4.33 7.48 -2.91 -0.02 4.31 16 43 H 0.13 3.98 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -86.29 363.32 4.36 -81.93 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: 1.24 Total: 17.55 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: 4.37 Total: -4.60 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: -1.03 Total: -40.31 kcal Atomic # 8 Polarization: -98.56 SS G_CDS: -1.89 Total: -100.45 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.67 Total: 45.87 kcal Total: -86.29 4.36 -81.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626791761.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.709 kcal (2) G-P(sol) polarization free energy of solvation -86.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds