Wall clock time and date at job start Wed Mar 25 2020 18:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.21283 * 1 3 3 N 1.34775 * 119.99613 * 2 1 4 4 C 1.46497 * 120.00265 * 322.62247 * 3 2 1 5 5 C 1.52996 * 117.50047 * 13.63326 * 4 3 2 6 6 C 1.52991 * 117.50089 * 305.01006 * 4 3 2 7 7 C 1.46504 * 119.99666 * 142.62784 * 3 2 1 8 8 H 1.09003 * 110.27424 * 226.08866 * 7 3 2 9 9 C 1.54592 * 110.31291 * 103.89287 * 7 3 2 10 10 C 1.54937 * 102.92405 * 219.12833 * 9 7 3 11 11 N 1.48538 * 103.22654 * 37.40815 * 10 9 7 12 12 C 1.47892 * 105.82141 * 320.79765 * 11 10 9 13 13 C 1.50696 * 119.99970 * 180.27728 * 2 1 3 14 14 O 1.42903 * 109.46896 * 32.15856 * 13 2 1 15 15 Si 1.86296 * 109.47199 * 272.15871 * 13 2 1 16 16 H 1.48499 * 109.47155 * 41.80773 * 15 13 2 17 17 H 1.48497 * 109.47214 * 161.81184 * 15 13 2 18 18 H 1.37827 * 71.88065 * 193.67855 * 12 11 10 19 19 C 1.50703 * 109.47200 * 152.15698 * 13 2 1 20 20 C 1.38236 * 119.98764 * 242.37928 * 19 13 2 21 21 C 1.38229 * 120.00819 * 179.76897 * 20 19 13 22 22 C 1.38329 * 119.98613 * 0.50120 * 21 20 19 23 23 Br 1.89095 * 120.00735 * 179.72705 * 22 21 20 24 24 C 1.38321 * 119.97750 * 359.75297 * 22 21 20 25 25 C 1.38219 * 119.99631 * 359.97438 * 24 22 21 26 26 H 1.09007 * 115.54568 * 159.34334 * 4 3 2 27 27 H 1.09002 * 117.49726 * 0.02562 * 5 4 3 28 28 H 1.09004 * 117.50052 * 145.01707 * 5 4 3 29 29 H 1.09005 * 117.50193 * 214.97680 * 6 4 3 30 30 H 1.08998 * 117.50110 * 359.97438 * 6 4 3 31 31 H 1.09002 * 110.72084 * 337.48593 * 9 7 3 32 32 H 1.09001 * 110.72267 * 100.76961 * 9 7 3 33 33 H 1.09004 * 110.66664 * 278.97781 * 10 9 7 34 34 H 0.94287 * 118.18683 * 132.68390 * 24 22 21 35 35 H 1.00901 * 110.99278 * 81.30864 * 11 10 9 36 36 H 1.08998 * 109.92085 * 265.97092 * 12 11 10 37 37 H 1.09005 * 109.92087 * 144.67962 * 12 11 10 38 38 H 1.08004 * 119.99907 * 0.02562 * 20 19 13 39 39 H 1.07993 * 120.00498 * 180.27783 * 21 20 19 40 40 H 0.72122 * 79.72212 * 104.39036 * 34 24 22 41 41 H 1.07994 * 119.99799 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.2128 0.0000 0.0000 3 7 1.8866 1.1672 0.0000 4 6 1.3797 2.3057 -0.7702 5 6 -0.0577 2.2246 -1.2877 6 6 1.1147 2.0881 -2.2611 7 6 3.1261 1.2975 0.7701 8 1 3.1214 2.2273 1.3389 9 6 4.3509 1.2483 -0.1718 10 6 5.3767 0.4151 0.6368 11 7 4.5323 -0.6083 1.3047 12 6 3.2971 0.0937 1.7153 13 6 1.9663 -1.3051 -0.0063 14 8 1.2166 -2.2844 -0.7282 15 14 2.2195 -1.8844 1.7461 16 1 0.9758 -1.6607 2.5260 17 1 2.5501 -3.3321 1.7459 18 1 3.3346 -1.1222 2.3632 19 6 3.3055 -1.1087 -0.6690 20 6 3.6104 -1.7974 -1.8282 21 6 4.8368 -1.6140 -2.4390 22 6 5.7629 -0.7491 -1.8843 23 35 7.4438 -0.5037 -2.7152 24 6 5.4593 -0.0643 -0.7215 25 6 4.2306 -0.2440 -0.1145 26 1 1.7498 3.2837 -0.4622 27 1 -0.6265 1.3244 -1.0548 28 1 -0.6339 3.1494 -1.3202 29 1 1.3098 2.9230 -2.9342 30 1 1.3178 1.0980 -2.6692 31 1 4.0986 0.7478 -1.1067 32 1 4.7324 2.2517 -0.3610 33 1 5.8821 1.0381 1.3748 34 1 6.0991 -0.0571 -0.0289 35 1 4.3236 -1.3703 0.6772 36 1 3.3914 0.4401 2.7445 37 1 2.4415 -0.5753 1.6229 38 1 2.8887 -2.4756 -2.2590 39 1 5.0731 -2.1486 -3.3470 40 1 6.1823 0.6108 -0.2879 41 1 3.9937 0.2903 0.7936 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000435242997.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Mar 25 2020 18:29:58 Heat of formation + Delta-G solvation = 1250.005276 kcal Electronic energy + Delta-G solvation = -29213.186802 eV Core-core repulsion = 25581.728613 eV Total energy + Delta-G solvation = -3631.458189 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 367.057 amu Computer time = 2.60 seconds Orbital eigenvalues (eV) -54.16398 -40.26575 -38.34879 -36.19569 -35.42579 -33.85535 -31.86847 -30.54422 -29.73383 -28.43079 -27.20942 -25.43034 -24.00441 -22.57434 -21.92756 -21.65234 -20.45013 -19.95423 -18.87430 -17.67220 -17.25593 -16.41495 -15.90982 -15.29482 -14.85476 -14.51735 -13.91104 -13.89535 -13.67324 -13.17745 -13.03583 -12.76437 -12.55211 -12.12723 -12.01186 -11.68002 -11.55934 -11.27594 -11.03329 -10.94301 -10.61323 -10.47138 -10.08718 -9.95040 -9.85764 -9.74832 -9.49435 -9.22881 -8.66780 -8.25021 -8.02513 -7.55434 -6.94399 -6.27028 -6.04986 -5.61483 -5.27844 1.79695 2.25282 2.30625 2.35835 2.94516 3.25237 3.31645 3.49929 3.68735 3.86773 4.06963 4.21236 4.26811 4.36079 4.47342 4.52082 4.66787 4.96726 5.21313 5.29763 5.34980 5.40387 5.45532 5.56890 5.62321 5.74918 5.81447 5.95219 6.10356 6.16597 6.18135 6.21537 6.38312 6.55691 6.57865 6.65814 6.77160 6.86691 6.90065 7.09679 7.46592 7.49367 8.00456 8.04067 8.25155 9.19356 9.79571 Molecular weight = 367.06amu Principal moments of inertia in cm(-1) A = 0.014811 B = 0.005653 C = 0.005198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.971881 B = 4952.263504 C = 5385.380842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.513 6.513 2 C 0.508 3.492 3 N -0.603 5.603 4 C 0.086 3.914 5 C -0.202 4.202 6 C -0.198 4.198 7 C 0.103 3.897 8 H 0.098 0.902 9 C -0.072 4.072 10 C -0.403 4.403 11 N -0.517 5.517 12 C -0.004 4.004 13 C 0.055 3.945 14 O -0.796 6.796 15 Si 0.778 3.222 16 H -0.262 1.262 17 H -0.277 1.277 18 H -0.194 1.194 19 C -0.331 4.331 20 C 0.024 3.976 21 C -0.268 4.268 22 C -0.025 4.025 23 Br -0.102 7.102 24 C -0.273 4.273 25 C -0.157 4.157 26 H 0.117 0.883 27 H 0.137 0.863 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.164 0.836 32 H 0.089 0.911 33 H 0.117 0.883 34 H 0.395 0.605 35 H 0.434 0.566 36 H 0.115 0.885 37 H 0.043 0.957 38 H 0.125 0.875 39 H 0.103 0.897 40 H 0.096 0.904 41 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.585 10.740 1.431 16.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.387 6.387 2 C 0.301 3.699 3 N -0.342 5.342 4 C -0.019 4.019 5 C -0.239 4.239 6 C -0.237 4.237 7 C -0.005 4.005 8 H 0.115 0.885 9 C -0.108 4.108 10 C -0.505 4.505 11 N -0.193 5.193 12 C -0.122 4.122 13 C -0.046 4.046 14 O -0.739 6.739 15 Si 0.611 3.389 16 H -0.188 1.188 17 H -0.205 1.205 18 H -0.129 1.129 19 C -0.336 4.336 20 C 0.004 3.996 21 C -0.290 4.290 22 C -0.104 4.104 23 Br -0.017 7.017 24 C -0.295 4.295 25 C -0.198 4.198 26 H 0.134 0.866 27 H 0.154 0.846 28 H 0.103 0.897 29 H 0.109 0.891 30 H 0.115 0.885 31 H 0.178 0.822 32 H 0.106 0.894 33 H 0.134 0.866 34 H 0.401 0.599 35 H 0.323 0.677 36 H 0.133 0.867 37 H 0.061 0.939 38 H 0.143 0.857 39 H 0.121 0.879 40 H 0.109 0.891 41 H 0.346 0.654 Dipole moment (debyes) X Y Z Total from point charges 12.710 9.998 2.554 16.371 hybrid contribution -1.002 -0.120 -0.222 1.034 sum 11.708 9.878 2.332 15.494 Atomic orbital electron populations 1.90259 1.15868 1.87089 1.45457 1.24017 0.88614 0.85577 0.71669 1.47382 1.23570 1.11792 1.51428 1.21325 0.98688 0.89939 0.91984 1.24141 0.91540 1.05289 1.02925 1.23426 1.03919 1.03243 0.93155 1.22447 0.88743 0.95939 0.93326 0.88459 1.22073 0.91950 0.96764 1.00050 1.39759 1.09607 1.04166 0.96968 1.63771 1.12449 1.13577 1.29548 1.23063 0.94032 0.93992 1.01131 1.22511 0.90340 0.90118 1.01586 1.95046 1.67358 1.46192 1.65333 0.91472 0.81263 0.83238 0.82929 1.18846 1.20470 1.12855 1.20612 0.99804 1.07688 1.05495 1.20747 0.93056 0.93374 0.92449 1.20142 0.95625 1.08973 1.04210 1.21655 0.90680 1.06077 0.91942 1.96513 1.26442 1.96976 1.81740 1.13124 1.00674 1.22384 0.93305 1.28797 1.02002 1.00457 0.88511 0.86580 0.84564 0.89672 0.89120 0.88496 0.82174 0.89382 0.86555 0.59882 0.67689 0.86678 0.93945 0.85730 0.87886 0.89079 0.65444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 63. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.51 -14.77 13.92 -11.92 -0.17 -14.93 16 2 C 0.51 12.92 4.77 -10.99 -0.05 12.87 16 3 N -0.60 -11.69 2.57 -235.93 -0.61 -12.29 16 4 C 0.09 1.45 6.55 -67.94 -0.45 1.00 16 5 C -0.20 -3.68 9.65 -26.74 -0.26 -3.94 16 6 C -0.20 -3.47 10.17 -26.74 -0.27 -3.74 16 7 C 0.10 1.55 3.38 -66.76 -0.23 1.33 16 8 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 9 C -0.07 -0.99 4.43 -133.13 -0.59 -1.58 16 10 C -0.40 -5.19 4.69 -134.20 -0.63 -5.82 16 11 N -0.52 -8.37 5.97 ******* -10.47 -18.84 16 12 C 0.00 -0.07 3.30 -3.36 -0.01 -0.08 16 13 C 0.05 1.48 0.76 -29.04 -0.02 1.46 16 14 O -0.80 -27.40 15.88 -52.71 -0.84 -28.24 16 15 Si 0.78 18.71 22.31 -169.99 -3.79 14.92 16 16 H -0.26 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.28 -7.33 7.11 56.52 0.40 -6.93 16 18 H -0.19 -3.53 2.49 -52.37 -0.13 -3.66 16 19 C -0.33 -7.57 3.03 -104.62 -0.32 -7.89 16 20 C 0.02 0.57 9.37 -39.59 -0.37 0.20 16 21 C -0.27 -5.35 9.79 -39.55 -0.39 -5.74 16 22 C -0.02 -0.42 6.12 -39.52 -0.24 -0.66 16 23 Br -0.10 -1.43 33.70 -68.01 -2.29 -3.72 16 24 C -0.27 -4.12 3.62 -150.30 -0.54 -4.66 16 25 C -0.16 -2.73 0.11 -209.68 -0.02 -2.76 16 26 H 0.12 1.49 8.14 -51.92 -0.42 1.06 16 27 H 0.14 3.13 5.01 -51.95 -0.26 2.87 16 28 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 29 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.10 2.05 8.14 -51.93 -0.42 1.63 16 31 H 0.16 2.83 4.04 -174.39 -0.70 2.13 16 32 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.12 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.40 5.13 2.34 -167.55 -0.39 4.74 16 35 H 0.43 8.36 3.05 -143.79 -0.44 7.92 16 36 H 0.12 1.48 7.97 -51.93 -0.41 1.07 16 37 H 0.04 0.89 0.12 -51.93 -0.01 0.89 16 38 H 0.12 3.36 7.01 -52.48 -0.37 2.99 16 39 H 0.10 1.97 8.06 -52.49 -0.42 1.55 16 40 H 0.10 1.13 4.27 -150.75 -0.64 0.49 16 41 H 0.34 5.24 0.00 0.00 0.00 5.24 16 LS Contribution 289.65 15.07 4.37 4.37 Total: -1.00 -35.29 289.65 -24.13 -59.42 By element: Atomic # 1 Polarization: 25.26 SS G_CDS: -5.94 Total: 19.32 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: -4.39 Total: -20.00 kcal Atomic # 7 Polarization: -20.06 SS G_CDS: -11.08 Total: -31.14 kcal Atomic # 8 Polarization: -42.17 SS G_CDS: -1.00 Total: -43.17 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -3.79 Total: 14.92 kcal Atomic # 35 Polarization: -1.43 SS G_CDS: -2.29 Total: -3.72 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -35.29 -24.13 -59.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435242997.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1309.423 kcal (2) G-P(sol) polarization free energy of solvation -35.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1274.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -24.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 1250.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.60 seconds