Wall clock time and date at job start Wed Mar 25 2020 18:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.21283 * 1 3 3 N 1.34775 * 119.99613 * 2 1 4 4 C 1.46497 * 120.00265 * 322.62247 * 3 2 1 5 5 C 1.52996 * 117.50047 * 13.63326 * 4 3 2 6 6 C 1.52991 * 117.50089 * 305.01006 * 4 3 2 7 7 C 1.46504 * 119.99666 * 142.62784 * 3 2 1 8 8 H 1.09003 * 110.27424 * 226.08866 * 7 3 2 9 9 C 1.54592 * 110.31291 * 103.89287 * 7 3 2 10 10 C 1.54937 * 102.92405 * 219.12833 * 9 7 3 11 11 N 1.48538 * 103.22654 * 37.40815 * 10 9 7 12 12 C 1.47892 * 105.82141 * 320.79765 * 11 10 9 13 13 C 1.50696 * 119.99970 * 180.27728 * 2 1 3 14 14 O 1.42903 * 109.46896 * 32.15856 * 13 2 1 15 15 Si 1.86296 * 109.47199 * 272.15871 * 13 2 1 16 16 H 1.48499 * 109.47155 * 41.80773 * 15 13 2 17 17 H 1.48497 * 109.47214 * 161.81184 * 15 13 2 18 18 H 1.37827 * 71.88065 * 193.67855 * 12 11 10 19 19 C 1.50703 * 109.47200 * 152.15698 * 13 2 1 20 20 C 1.38236 * 119.98764 * 242.37928 * 19 13 2 21 21 C 1.38229 * 120.00819 * 179.76897 * 20 19 13 22 22 C 1.38329 * 119.98613 * 0.50120 * 21 20 19 23 23 Br 1.89095 * 120.00735 * 179.72705 * 22 21 20 24 24 C 1.38321 * 119.97750 * 359.75297 * 22 21 20 25 25 C 1.38219 * 119.99631 * 359.97438 * 24 22 21 26 26 H 1.09007 * 115.54568 * 159.34334 * 4 3 2 27 27 H 1.09002 * 117.49726 * 0.02562 * 5 4 3 28 28 H 1.09004 * 117.50052 * 145.01707 * 5 4 3 29 29 H 1.09005 * 117.50193 * 214.97680 * 6 4 3 30 30 H 1.08998 * 117.50110 * 359.97438 * 6 4 3 31 31 H 1.09002 * 110.72084 * 337.48593 * 9 7 3 32 32 H 1.09001 * 110.72267 * 100.76961 * 9 7 3 33 33 H 1.09004 * 110.66664 * 278.97781 * 10 9 7 34 34 H 0.94287 * 118.18683 * 132.68390 * 24 22 21 35 35 H 1.00901 * 110.99278 * 81.30864 * 11 10 9 36 36 H 1.08998 * 109.92085 * 265.97092 * 12 11 10 37 37 H 1.09005 * 109.92087 * 144.67962 * 12 11 10 38 38 H 1.08004 * 119.99907 * 0.02562 * 20 19 13 39 39 H 1.07993 * 120.00498 * 180.27783 * 21 20 19 40 40 H 0.72122 * 79.72212 * 104.39036 * 34 24 22 41 41 H 1.07994 * 119.99799 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.2128 0.0000 0.0000 3 7 1.8866 1.1672 0.0000 4 6 1.3797 2.3057 -0.7702 5 6 -0.0577 2.2246 -1.2877 6 6 1.1147 2.0881 -2.2611 7 6 3.1261 1.2975 0.7701 8 1 3.1214 2.2273 1.3389 9 6 4.3509 1.2483 -0.1718 10 6 5.3767 0.4151 0.6368 11 7 4.5323 -0.6083 1.3047 12 6 3.2971 0.0937 1.7153 13 6 1.9663 -1.3051 -0.0063 14 8 1.2166 -2.2844 -0.7282 15 14 2.2195 -1.8844 1.7461 16 1 0.9758 -1.6607 2.5260 17 1 2.5501 -3.3321 1.7459 18 1 3.3346 -1.1222 2.3632 19 6 3.3055 -1.1087 -0.6690 20 6 3.6104 -1.7974 -1.8282 21 6 4.8368 -1.6140 -2.4390 22 6 5.7629 -0.7491 -1.8843 23 35 7.4438 -0.5037 -2.7152 24 6 5.4593 -0.0643 -0.7215 25 6 4.2306 -0.2440 -0.1145 26 1 1.7498 3.2837 -0.4622 27 1 -0.6265 1.3244 -1.0548 28 1 -0.6339 3.1494 -1.3202 29 1 1.3098 2.9230 -2.9342 30 1 1.3178 1.0980 -2.6692 31 1 4.0986 0.7478 -1.1067 32 1 4.7324 2.2517 -0.3610 33 1 5.8821 1.0381 1.3748 34 1 6.0991 -0.0571 -0.0289 35 1 4.3236 -1.3703 0.6772 36 1 3.3914 0.4401 2.7445 37 1 2.4415 -0.5753 1.6229 38 1 2.8887 -2.4756 -2.2590 39 1 5.0731 -2.1486 -3.3470 40 1 6.1823 0.6108 -0.2879 41 1 3.9937 0.2903 0.7936 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000435242997.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Mar 25 2020 18:29:56 Heat of formation + Delta-G solvation = 1194.459095 kcal Electronic energy + Delta-G solvation = -29215.595465 eV Core-core repulsion = 25581.728613 eV Total energy + Delta-G solvation = -3633.866852 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 367.057 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -55.47679 -41.79713 -39.89590 -37.72375 -37.09497 -35.21800 -33.45108 -32.20011 -31.19103 -29.85107 -28.84257 -26.87179 -25.59768 -23.93995 -23.39782 -23.12260 -21.80872 -21.28464 -20.40245 -19.22036 -18.60911 -17.86883 -17.45465 -16.77727 -16.41538 -15.95680 -15.50322 -15.30437 -15.13583 -14.51426 -14.49005 -14.36920 -14.20189 -13.60864 -13.48541 -13.29622 -13.03537 -12.79996 -12.62791 -12.39522 -12.33473 -12.11699 -11.76970 -11.41734 -11.24579 -11.01306 -10.91396 -10.79176 -10.56320 -9.75764 -9.64722 -9.08087 -8.46759 -8.20421 -7.77199 -7.56624 -6.57883 0.25474 0.47385 0.93252 0.99056 1.11558 1.32193 1.68253 1.89441 2.17497 2.45126 2.59990 2.77571 2.92743 3.05293 3.12122 3.27230 3.45295 3.70423 3.95102 4.01816 4.08243 4.12027 4.19168 4.23102 4.40656 4.44769 4.58097 4.69471 4.75847 4.79548 4.92092 4.95329 5.01239 5.07497 5.17842 5.23072 5.32217 5.37363 5.40197 5.65062 5.94847 5.99327 6.40324 6.45567 6.66964 7.36948 7.87626 Molecular weight = 367.06amu Principal moments of inertia in cm(-1) A = 0.014811 B = 0.005653 C = 0.005198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.971881 B = 4952.263504 C = 5385.380842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.579 6.579 2 C 0.503 3.497 3 N -0.601 5.601 4 C 0.110 3.890 5 C -0.228 4.228 6 C -0.204 4.204 7 C 0.105 3.895 8 H 0.199 0.801 9 C -0.086 4.086 10 C -0.321 4.321 11 N -0.536 5.536 12 C -0.085 4.085 13 C 0.014 3.986 14 O -0.923 6.923 15 Si 0.613 3.387 16 H -0.314 1.314 17 H -0.351 1.351 18 H 0.103 0.897 19 C -0.370 4.370 20 C -0.033 4.033 21 C -0.301 4.301 22 C -0.053 4.053 23 Br -0.062 7.062 24 C -0.253 4.253 25 C -0.222 4.222 26 H 0.202 0.798 27 H 0.071 0.929 28 H 0.128 0.872 29 H 0.139 0.861 30 H 0.027 0.973 31 H 0.112 0.888 32 H 0.182 0.818 33 H 0.221 0.779 34 H 0.376 0.624 35 H 0.415 0.585 36 H 0.220 0.780 37 H 0.009 0.991 38 H 0.031 0.969 39 H 0.077 0.923 40 H 0.238 0.762 41 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.609 21.634 7.101 31.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.459 6.459 2 C 0.297 3.703 3 N -0.337 5.337 4 C 0.006 3.994 5 C -0.266 4.266 6 C -0.243 4.243 7 C 0.001 3.999 8 H 0.216 0.784 9 C -0.121 4.121 10 C -0.423 4.423 11 N -0.214 5.214 12 C -0.201 4.201 13 C -0.083 4.083 14 O -0.870 6.870 15 Si 0.460 3.540 16 H -0.244 1.244 17 H -0.284 1.284 18 H 0.163 0.837 19 C -0.376 4.376 20 C -0.053 4.053 21 C -0.323 4.323 22 C -0.132 4.132 23 Br 0.024 6.976 24 C -0.274 4.274 25 C -0.257 4.257 26 H 0.218 0.782 27 H 0.089 0.911 28 H 0.146 0.854 29 H 0.156 0.844 30 H 0.046 0.954 31 H 0.126 0.874 32 H 0.198 0.802 33 H 0.237 0.763 34 H 0.383 0.617 35 H 0.301 0.699 36 H 0.236 0.764 37 H 0.026 0.974 38 H 0.050 0.950 39 H 0.095 0.905 40 H 0.251 0.749 41 H 0.433 0.567 Dipole moment (debyes) X Y Z Total from point charges 21.782 20.943 8.163 31.300 hybrid contribution -3.820 -3.506 -2.263 5.657 sum 17.962 17.436 5.900 25.719 Atomic orbital electron populations 1.90247 1.18638 1.88387 1.48595 1.23660 0.87869 0.87715 0.71068 1.47242 1.25026 1.10132 1.51333 1.22041 0.96172 0.91421 0.89734 1.23977 0.93022 1.04366 1.05232 1.23351 1.04343 1.01296 0.95296 1.22903 0.86528 0.97523 0.92969 0.78433 1.22081 0.91828 1.00617 0.97543 1.36201 1.06922 1.01165 0.98022 1.63710 1.11284 1.14285 1.32087 1.23841 0.92909 0.96126 1.07197 1.23183 0.92014 0.89420 1.03642 1.94907 1.70791 1.51123 1.70181 0.95409 0.91071 0.83092 0.84462 1.24393 1.28415 0.83681 1.19785 0.99610 1.12093 1.06086 1.20315 0.93816 0.95369 0.95810 1.19717 0.95732 1.12309 1.04528 1.21315 0.92095 1.07331 0.92439 1.96510 1.22438 1.96617 1.82081 1.16026 0.99502 1.21495 0.90330 1.32857 1.01047 0.99192 0.92615 0.78157 0.91059 0.85442 0.84350 0.95374 0.87379 0.80195 0.76345 0.61723 0.69921 0.76383 0.97403 0.95029 0.90480 0.74923 0.56652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 54. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.58 -38.45 13.92 13.67 0.19 -38.26 16 2 C 0.50 27.97 4.77 87.66 0.42 28.39 16 3 N -0.60 -21.03 2.57 ******* -2.61 -23.64 16 4 C 0.11 3.15 6.55 44.99 0.29 3.45 16 5 C -0.23 -8.50 9.65 30.59 0.30 -8.21 16 6 C -0.20 -7.16 10.17 30.59 0.31 -6.85 16 7 C 0.11 1.85 3.38 45.75 0.15 2.01 16 8 H 0.20 0.36 8.14 -2.39 -0.02 0.34 16 9 C -0.09 -1.15 4.43 -38.33 -0.17 -1.32 16 10 C -0.32 -2.89 4.69 0.94 0.00 -2.89 16 11 N -0.54 -11.51 5.97 ******* -34.05 -45.56 16 12 C -0.09 -1.89 3.30 86.06 0.28 -1.60 16 13 C 0.01 0.89 0.76 29.10 0.02 0.91 16 14 O -0.92 -78.68 15.88 -132.27 -2.10 -80.78 16 15 Si 0.61 32.30 22.31 68.60 1.53 33.83 16 16 H -0.31 -18.72 7.11 99.48 0.71 -18.01 16 17 H -0.35 -22.66 7.11 99.48 0.71 -21.95 16 18 H 0.10 2.95 2.49 -27.32 -0.07 2.88 16 19 C -0.37 -18.58 3.03 -19.86 -0.06 -18.64 16 20 C -0.03 -1.88 9.37 22.27 0.21 -1.68 16 21 C -0.30 -13.81 9.79 22.29 0.22 -13.59 16 22 C -0.05 -1.65 6.12 22.31 0.14 -1.51 16 23 Br -0.06 -1.45 33.70 -20.37 -0.69 -2.14 16 24 C -0.25 -5.37 3.62 -49.45 -0.18 -5.55 16 25 C -0.22 -6.42 0.11 -48.55 -0.01 -6.43 16 26 H 0.20 2.62 8.14 -2.38 -0.02 2.60 16 27 H 0.07 3.73 5.01 -2.68 -0.01 3.71 16 28 H 0.13 3.56 8.14 -2.38 -0.02 3.54 16 29 H 0.14 3.47 8.14 -2.38 -0.02 3.45 16 30 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.11 3.09 4.04 -117.42 -0.47 2.62 16 32 H 0.18 0.01 8.14 -2.39 -0.02 -0.01 16 33 H 0.22 -1.25 8.14 -2.38 -0.02 -1.27 16 34 H 0.38 4.31 2.34 -110.99 -0.26 4.05 16 35 H 0.42 14.49 3.05 -187.85 -0.57 13.92 16 36 H 0.22 1.52 7.97 -2.39 -0.02 1.50 16 37 H 0.01 0.33 0.12 -2.38 0.00 0.33 16 38 H 0.03 2.26 7.01 -2.91 -0.02 2.24 16 39 H 0.08 3.62 8.06 -2.91 -0.02 3.60 16 40 H 0.24 1.46 4.27 -95.21 -0.41 1.05 16 41 H 0.43 8.42 0.00 0.00 0.00 8.42 16 Total: -1.00 -139.34 289.65 -36.38 -175.72 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -0.58 Total: 14.35 kcal Atomic # 6 Polarization: -35.45 SS G_CDS: 1.93 Total: -33.52 kcal Atomic # 7 Polarization: -32.54 SS G_CDS: -36.67 Total: -69.20 kcal Atomic # 8 Polarization: -117.13 SS G_CDS: -1.91 Total: -119.04 kcal Atomic # 14 Polarization: 32.30 SS G_CDS: 1.53 Total: 33.83 kcal Atomic # 35 Polarization: -1.45 SS G_CDS: -0.69 Total: -2.14 kcal Total: -139.34 -36.38 -175.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435242997.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1370.178 kcal (2) G-P(sol) polarization free energy of solvation -139.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1230.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -36.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -175.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 1194.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds