Wall clock time and date at job start Wed Mar 25 2020 21:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46955 * 2 1 4 4 H 1.09006 * 109.47110 * 55.00622 * 3 2 1 5 5 C 1.52999 * 109.47518 * 295.00443 * 3 2 1 6 6 C 1.53002 * 109.47075 * 174.99861 * 3 2 1 7 7 O 1.42897 * 109.47440 * 289.90490 * 6 3 2 8 8 Si 1.86304 * 109.46754 * 49.90594 * 6 3 2 9 9 H 1.48503 * 109.47098 * 250.08063 * 8 6 3 10 10 H 1.48494 * 109.47385 * 10.08107 * 8 6 3 11 11 H 1.48505 * 109.47045 * 130.08345 * 8 6 3 12 12 C 1.50697 * 109.47115 * 169.89977 * 6 3 2 13 13 O 1.21267 * 119.99972 * 100.09203 * 12 6 3 14 14 N 1.34773 * 120.00427 * 280.08862 * 12 6 3 15 15 C 1.38320 * 119.99924 * 22.83064 * 14 12 6 16 16 N 1.30180 * 120.00246 * 308.93912 * 15 14 12 17 17 N 1.37461 * 120.00356 * 128.93754 * 15 14 12 18 18 C 1.40351 * 120.00182 * 202.82641 * 14 12 6 19 19 C 1.38830 * 119.98853 * 156.55015 * 18 14 12 20 20 C 1.38057 * 120.00172 * 180.02562 * 19 18 14 21 21 C 1.38891 * 119.99617 * 0.02562 * 20 19 18 22 22 N 1.39865 * 120.01058 * 180.02562 * 21 20 19 23 23 C 1.47005 * 111.00114 * 179.97438 * 22 21 20 24 24 C 1.53103 * 109.25712 * 177.60416 * 23 22 21 25 25 O 1.43010 * 109.25852 * 56.85125 * 24 23 22 26 26 C 1.43024 * 113.73668 * 301.32691 * 25 24 23 27 27 C 1.47013 * 110.99949 * 56.35598 * 22 21 20 28 28 C 1.38893 * 119.98363 * 0.26796 * 21 20 19 29 29 C 1.38063 * 119.99126 * 359.47844 * 28 21 20 30 30 H 1.08998 * 109.46977 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46777 * 299.99455 * 1 2 3 32 32 H 1.08996 * 109.47151 * 59.99231 * 1 2 3 33 33 H 1.08998 * 109.46777 * 240.00545 * 2 1 3 34 34 H 1.08997 * 109.47547 * 120.00406 * 2 1 3 35 35 H 1.08994 * 109.47268 * 83.07888 * 5 3 2 36 36 H 1.09001 * 109.47134 * 203.07818 * 5 3 2 37 37 H 1.09000 * 109.46979 * 323.07680 * 5 3 2 38 38 H 0.97005 * 119.99424 * 61.89213 * 16 15 14 39 39 H 0.96996 * 119.99895 * 357.47810 * 17 15 14 40 40 H 0.97001 * 119.99892 * 177.47288 * 17 15 14 41 41 H 1.07996 * 119.99687 * 0.02616 * 19 18 14 42 42 H 1.08004 * 119.99997 * 180.02562 * 20 19 18 43 43 H 1.08999 * 109.50876 * 57.66895 * 23 22 21 44 44 H 1.08996 * 109.51007 * 297.53789 * 23 22 21 45 45 H 1.09005 * 109.50563 * 176.78510 * 24 23 22 46 46 H 1.08998 * 109.50324 * 296.86770 * 24 23 22 47 47 H 1.08994 * 109.50667 * 178.60438 * 26 25 24 48 48 H 1.09000 * 109.50509 * 298.73847 * 26 25 24 49 49 H 1.09004 * 109.50503 * 62.46796 * 27 22 21 50 50 H 1.08997 * 109.54932 * 302.35102 * 27 22 21 51 51 H 1.08000 * 120.00542 * 179.72652 * 28 21 20 52 52 H 1.07999 * 119.99656 * 180.27456 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1267 -1.3073 6 6 3.5648 1.4444 0.1258 7 8 3.9350 1.0233 1.4402 8 14 4.2928 0.2753 -1.1289 9 1 4.8536 -0.9108 -0.4334 10 1 3.2327 -0.1601 -2.0733 11 1 5.3723 0.9649 -1.8802 12 6 4.0876 2.8359 -0.1218 13 8 4.3864 3.5468 0.8141 14 7 4.2231 3.2904 -1.3833 15 6 3.4803 2.7268 -2.4050 16 7 3.4672 1.4349 -2.5641 17 7 2.7558 3.5309 -3.2525 18 6 5.1178 4.3357 -1.6604 19 6 5.6306 4.4890 -2.9414 20 6 6.5111 5.5167 -3.2141 21 6 6.8843 6.3970 -2.2067 22 7 7.7759 7.4387 -2.4828 23 6 8.0319 8.2455 -1.2809 24 6 9.0558 9.3345 -1.6124 25 8 8.5690 10.1240 -2.7009 26 6 8.3097 9.3699 -3.8882 27 6 7.2780 8.2816 -3.5794 28 6 6.3758 6.2396 -0.9238 29 6 5.4912 5.2148 -0.6530 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 0.6120 2.4930 -1.2239 36 1 2.3059 2.9634 -1.5023 37 1 1.6992 1.4110 -2.1269 38 1 3.1208 0.8632 -1.8611 39 1 2.7361 4.4904 -3.1119 40 1 2.2644 3.1387 -3.9912 41 1 5.3406 3.8042 -3.7246 42 1 6.9097 5.6362 -4.2108 43 1 8.4237 7.6061 -0.4899 44 1 7.1028 8.7086 -0.9487 45 1 9.2060 9.9706 -0.7400 46 1 10.0019 8.8713 -1.8923 47 1 7.9202 10.0316 -4.6618 48 1 9.2339 8.9078 -4.2351 49 1 6.3369 8.7454 -3.2836 50 1 7.1188 7.6692 -4.4669 51 1 6.6692 6.9213 -0.1392 52 1 5.0924 5.0951 0.3435 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184323118.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Mar 25 2020 21:56:48 Heat of formation + Delta-G solvation = 172.900348 kcal Electronic energy + Delta-G solvation = -35443.699876 eV Core-core repulsion = 31033.668426 eV Total energy + Delta-G solvation = -4410.031450 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 363.199 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.91230 -40.46961 -38.59047 -37.47294 -36.32193 -35.12942 -33.18738 -32.03327 -31.91662 -30.74509 -30.46728 -29.27463 -28.33460 -26.50318 -24.88583 -24.71841 -23.62735 -22.97593 -21.89652 -21.51945 -20.43761 -19.83051 -19.36577 -17.90765 -17.35190 -17.10842 -16.64209 -16.38626 -15.65209 -15.53613 -15.40623 -15.19758 -14.98035 -14.88030 -14.15112 -14.03512 -13.89098 -13.48285 -13.37066 -13.17943 -13.12059 -12.75121 -12.58129 -12.39717 -12.24340 -12.11602 -11.91338 -11.71235 -11.36617 -11.34242 -11.08009 -10.94533 -10.79278 -10.55893 -10.39548 -10.14699 -9.98103 -9.81051 -9.70942 -9.32627 -9.05505 -8.81983 -8.73520 -8.56645 -8.09453 -7.36989 -6.94870 -5.99321 -5.46958 1.37721 1.55359 1.97400 2.90332 3.20633 3.39032 3.46333 3.56144 3.75627 3.86972 3.99242 4.38481 4.51463 4.61040 4.62855 4.73234 4.81752 4.96220 5.01539 5.07618 5.21702 5.29656 5.43448 5.44871 5.47304 5.56953 5.59085 5.65590 5.68344 5.69844 5.74707 5.96871 5.97382 6.00521 6.07875 6.12790 6.24797 6.32322 6.32852 6.50963 6.57784 6.62069 6.64624 6.69908 6.76476 6.83504 6.89490 6.93952 7.01383 7.23756 7.28378 7.37592 7.40573 7.59949 7.87731 8.78342 8.85345 9.83749 Molecular weight = 363.20amu Principal moments of inertia in cm(-1) A = 0.021695 B = 0.002811 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.339531 B = 9959.949186 C =10399.657648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.126 4.126 3 C -0.112 4.112 4 H 0.070 0.930 5 C -0.211 4.211 6 C -0.041 4.041 7 O -0.812 6.812 8 Si 1.060 2.940 9 H -0.326 1.326 10 H -0.304 1.304 11 H -0.323 1.323 12 C 0.496 3.504 13 O -0.490 6.490 14 N -0.566 5.566 15 C 0.739 3.261 16 N -0.921 5.921 17 N -0.843 5.843 18 C 0.122 3.878 19 C -0.129 4.129 20 C -0.115 4.115 21 C 0.076 3.924 22 N -0.485 5.485 23 C 0.012 3.988 24 C 0.063 3.937 25 O -0.386 6.386 26 C 0.063 3.937 27 C 0.020 3.980 28 C -0.146 4.146 29 C -0.121 4.121 30 H 0.046 0.954 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.059 0.941 34 H 0.079 0.921 35 H 0.042 0.958 36 H 0.079 0.921 37 H 0.098 0.902 38 H 0.403 0.597 39 H 0.396 0.604 40 H 0.418 0.582 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.095 0.905 44 H 0.055 0.945 45 H 0.101 0.899 46 H 0.061 0.939 47 H 0.100 0.900 48 H 0.061 0.939 49 H 0.051 0.949 50 H 0.091 0.909 51 H 0.127 0.873 52 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.107 14.644 -12.513 19.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.164 4.164 3 C -0.132 4.132 4 H 0.088 0.912 5 C -0.269 4.269 6 C -0.144 4.144 7 O -0.755 6.755 8 Si 0.918 3.082 9 H -0.262 1.262 10 H -0.248 1.248 11 H -0.257 1.257 12 C 0.290 3.710 13 O -0.359 6.359 14 N -0.301 5.301 15 C 0.395 3.605 16 N -0.643 5.643 17 N -0.395 5.395 18 C 0.028 3.972 19 C -0.150 4.150 20 C -0.136 4.136 21 C -0.021 4.021 22 N -0.202 5.202 23 C -0.115 4.115 24 C -0.014 4.014 25 O -0.304 6.304 26 C -0.014 4.014 27 C -0.107 4.107 28 C -0.167 4.167 29 C -0.142 4.142 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.061 0.939 36 H 0.095 0.905 37 H 0.116 0.884 38 H 0.278 0.722 39 H 0.226 0.774 40 H 0.251 0.749 41 H 0.143 0.857 42 H 0.142 0.858 43 H 0.113 0.887 44 H 0.073 0.927 45 H 0.119 0.881 46 H 0.079 0.921 47 H 0.118 0.882 48 H 0.079 0.921 49 H 0.069 0.931 50 H 0.110 0.890 51 H 0.145 0.855 52 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 2.373 13.816 -12.743 18.944 hybrid contribution -0.882 0.927 0.512 1.378 sum 1.491 14.743 -12.231 19.214 Atomic orbital electron populations 1.21759 0.96757 1.00550 1.01099 1.21651 0.94741 0.97025 1.02938 1.21875 0.99648 0.95792 0.95882 0.91198 1.24661 1.00509 1.00442 1.01291 1.25061 0.92647 0.88525 1.08180 1.95075 1.85768 1.79306 1.15313 0.83626 0.77319 0.80018 0.67217 1.26185 1.24821 1.25686 1.25860 0.75602 0.91260 0.78281 1.90215 1.47018 1.56697 1.41990 1.46516 1.38880 1.34134 1.10609 1.18739 0.78493 0.89274 0.74032 1.69825 1.49145 0.97533 1.47759 1.43707 1.49076 1.10290 1.36465 1.18341 0.94533 0.89839 0.94496 1.20797 0.99190 0.99382 0.95643 1.20404 0.99382 0.95228 0.98598 1.18836 0.94117 0.94781 0.94336 1.59472 1.42576 1.10193 1.07943 1.22969 0.99959 0.95674 0.92941 1.22718 0.95911 0.92559 0.90183 1.87990 1.86002 1.34742 1.21694 1.22709 0.97981 0.93128 0.87619 1.22931 0.97547 0.95109 0.95065 1.21277 0.98913 1.00326 0.96152 1.22289 0.97980 0.92192 1.01723 0.93444 0.93143 0.93297 0.92252 0.90222 0.93884 0.90477 0.88426 0.72213 0.77422 0.74899 0.85659 0.85751 0.88710 0.92661 0.88058 0.92084 0.88177 0.92096 0.93067 0.89037 0.85495 0.81188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.73 37.16 0.36 -2.09 16 2 C -0.13 -2.76 4.37 -26.73 -0.12 -2.87 16 3 C -0.11 -2.70 1.98 -90.62 -0.18 -2.88 16 4 H 0.07 1.77 8.14 -51.93 -0.42 1.35 16 5 C -0.21 -4.09 5.72 37.16 0.21 -3.88 16 6 C -0.04 -1.18 0.63 -27.88 -0.02 -1.20 16 7 O -0.81 -28.94 16.95 -54.31 -0.92 -29.86 16 8 Si 1.06 28.87 18.96 -169.99 -3.22 25.65 16 9 H -0.33 -9.62 7.11 56.52 0.40 -9.21 16 10 H -0.30 -7.35 4.60 34.33 0.16 -7.19 16 11 H -0.32 -9.06 6.77 56.52 0.38 -8.68 16 12 C 0.50 13.44 5.41 -10.99 -0.06 13.38 16 13 O -0.49 -14.17 13.46 -13.51 -0.18 -14.35 16 14 N -0.57 -12.53 2.29 -100.42 -0.23 -12.76 16 15 C 0.74 14.35 2.77 -319.12 -0.88 13.46 16 16 N -0.92 -20.33 7.26 -0.89 -0.01 -20.34 16 17 N -0.84 -11.01 7.16 -0.27 0.00 -11.02 16 18 C 0.12 2.40 6.00 -83.52 -0.50 1.90 16 19 C -0.13 -2.10 9.04 -39.43 -0.36 -2.46 16 20 C -0.12 -1.62 9.19 -39.41 -0.36 -1.98 16 21 C 0.08 1.08 5.64 -83.71 -0.47 0.61 16 22 N -0.48 -5.71 4.78 -170.76 -0.82 -6.52 16 23 C 0.01 0.12 4.33 -3.71 -0.02 0.11 16 24 C 0.06 0.56 7.01 37.21 0.26 0.82 16 25 O -0.39 -3.96 10.83 -35.23 -0.38 -4.34 16 26 C 0.06 0.52 7.01 37.21 0.26 0.78 16 27 C 0.02 0.19 5.41 -3.71 -0.02 0.17 16 28 C -0.15 -2.28 8.81 -39.40 -0.35 -2.62 16 29 C -0.12 -2.33 9.05 -39.43 -0.36 -2.69 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.75 7.15 -51.93 -0.37 0.38 16 33 H 0.06 1.27 5.16 -51.93 -0.27 1.00 16 34 H 0.08 1.91 7.87 -51.93 -0.41 1.50 16 35 H 0.04 0.72 7.80 -51.93 -0.40 0.31 16 36 H 0.08 1.52 2.25 -120.23 -0.27 1.24 16 37 H 0.10 1.87 5.12 -51.93 -0.27 1.60 16 38 H 0.40 9.47 0.04 -40.82 0.00 9.47 16 39 H 0.40 4.36 8.72 -40.82 -0.36 4.00 16 40 H 0.42 4.36 8.94 -40.82 -0.37 3.99 16 41 H 0.13 1.97 7.12 -52.49 -0.37 1.60 16 42 H 0.12 1.44 7.20 -52.48 -0.38 1.06 16 43 H 0.09 0.97 7.21 -51.93 -0.37 0.60 16 44 H 0.06 0.59 7.55 -51.93 -0.39 0.19 16 45 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 48 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 49 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 50 H 0.09 0.77 6.86 -51.93 -0.36 0.41 16 51 H 0.13 1.72 5.81 -52.49 -0.30 1.41 16 52 H 0.17 3.73 5.00 -52.93 -0.26 3.46 16 LS Contribution 367.20 15.07 5.53 5.53 Total: -1.00 -39.11 367.20 -10.42 -49.52 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -7.60 Total: 9.93 kcal Atomic # 6 Polarization: 11.15 SS G_CDS: -2.59 Total: 8.55 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: -1.05 Total: -50.63 kcal Atomic # 8 Polarization: -47.06 SS G_CDS: -1.48 Total: -48.55 kcal Atomic # 14 Polarization: 28.87 SS G_CDS: -3.22 Total: 25.65 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -39.11 -10.42 -49.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184323118.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 222.425 kcal (2) G-P(sol) polarization free energy of solvation -39.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 183.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 172.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds