Wall clock time and date at job start Wed Mar 25 2020 21:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46955 * 2 1 4 4 H 1.09006 * 109.47110 * 55.00622 * 3 2 1 5 5 C 1.52999 * 109.47518 * 295.00443 * 3 2 1 6 6 C 1.53002 * 109.47075 * 174.99861 * 3 2 1 7 7 O 1.42897 * 109.47440 * 289.90490 * 6 3 2 8 8 Si 1.86304 * 109.46754 * 49.90594 * 6 3 2 9 9 H 1.48503 * 109.47098 * 250.08063 * 8 6 3 10 10 H 1.48494 * 109.47385 * 10.08107 * 8 6 3 11 11 H 1.48505 * 109.47045 * 130.08345 * 8 6 3 12 12 C 1.50697 * 109.47115 * 169.89977 * 6 3 2 13 13 O 1.21267 * 119.99972 * 100.09203 * 12 6 3 14 14 N 1.34773 * 120.00427 * 280.08862 * 12 6 3 15 15 C 1.38320 * 119.99924 * 22.83064 * 14 12 6 16 16 N 1.30180 * 120.00246 * 308.93912 * 15 14 12 17 17 N 1.37461 * 120.00356 * 128.93754 * 15 14 12 18 18 C 1.40351 * 120.00182 * 202.82641 * 14 12 6 19 19 C 1.38830 * 119.98853 * 156.55015 * 18 14 12 20 20 C 1.38057 * 120.00172 * 180.02562 * 19 18 14 21 21 C 1.38891 * 119.99617 * 0.02562 * 20 19 18 22 22 N 1.39865 * 120.01058 * 180.02562 * 21 20 19 23 23 C 1.47005 * 111.00114 * 179.97438 * 22 21 20 24 24 C 1.53103 * 109.25712 * 177.60416 * 23 22 21 25 25 O 1.43010 * 109.25852 * 56.85125 * 24 23 22 26 26 C 1.43024 * 113.73668 * 301.32691 * 25 24 23 27 27 C 1.47013 * 110.99949 * 56.35598 * 22 21 20 28 28 C 1.38893 * 119.98363 * 0.26796 * 21 20 19 29 29 C 1.38063 * 119.99126 * 359.47844 * 28 21 20 30 30 H 1.08998 * 109.46977 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46777 * 299.99455 * 1 2 3 32 32 H 1.08996 * 109.47151 * 59.99231 * 1 2 3 33 33 H 1.08998 * 109.46777 * 240.00545 * 2 1 3 34 34 H 1.08997 * 109.47547 * 120.00406 * 2 1 3 35 35 H 1.08994 * 109.47268 * 83.07888 * 5 3 2 36 36 H 1.09001 * 109.47134 * 203.07818 * 5 3 2 37 37 H 1.09000 * 109.46979 * 323.07680 * 5 3 2 38 38 H 0.97005 * 119.99424 * 61.89213 * 16 15 14 39 39 H 0.96996 * 119.99895 * 357.47810 * 17 15 14 40 40 H 0.97001 * 119.99892 * 177.47288 * 17 15 14 41 41 H 1.07996 * 119.99687 * 0.02616 * 19 18 14 42 42 H 1.08004 * 119.99997 * 180.02562 * 20 19 18 43 43 H 1.08999 * 109.50876 * 57.66895 * 23 22 21 44 44 H 1.08996 * 109.51007 * 297.53789 * 23 22 21 45 45 H 1.09005 * 109.50563 * 176.78510 * 24 23 22 46 46 H 1.08998 * 109.50324 * 296.86770 * 24 23 22 47 47 H 1.08994 * 109.50667 * 178.60438 * 26 25 24 48 48 H 1.09000 * 109.50509 * 298.73847 * 26 25 24 49 49 H 1.09004 * 109.50503 * 62.46796 * 27 22 21 50 50 H 1.08997 * 109.54932 * 302.35102 * 27 22 21 51 51 H 1.08000 * 120.00542 * 179.72652 * 28 21 20 52 52 H 1.07999 * 119.99656 * 180.27456 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1267 -1.3073 6 6 3.5648 1.4444 0.1258 7 8 3.9350 1.0233 1.4402 8 14 4.2928 0.2753 -1.1289 9 1 4.8536 -0.9108 -0.4334 10 1 3.2327 -0.1601 -2.0733 11 1 5.3723 0.9649 -1.8802 12 6 4.0876 2.8359 -0.1218 13 8 4.3864 3.5468 0.8141 14 7 4.2231 3.2904 -1.3833 15 6 3.4803 2.7268 -2.4050 16 7 3.4672 1.4349 -2.5641 17 7 2.7558 3.5309 -3.2525 18 6 5.1178 4.3357 -1.6604 19 6 5.6306 4.4890 -2.9414 20 6 6.5111 5.5167 -3.2141 21 6 6.8843 6.3970 -2.2067 22 7 7.7759 7.4387 -2.4828 23 6 8.0319 8.2455 -1.2809 24 6 9.0558 9.3345 -1.6124 25 8 8.5690 10.1240 -2.7009 26 6 8.3097 9.3699 -3.8882 27 6 7.2780 8.2816 -3.5794 28 6 6.3758 6.2396 -0.9238 29 6 5.4912 5.2148 -0.6530 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 0.6120 2.4930 -1.2239 36 1 2.3059 2.9634 -1.5023 37 1 1.6992 1.4110 -2.1269 38 1 3.1208 0.8632 -1.8611 39 1 2.7361 4.4904 -3.1119 40 1 2.2644 3.1387 -3.9912 41 1 5.3406 3.8042 -3.7246 42 1 6.9097 5.6362 -4.2108 43 1 8.4237 7.6061 -0.4899 44 1 7.1028 8.7086 -0.9487 45 1 9.2060 9.9706 -0.7400 46 1 10.0019 8.8713 -1.8923 47 1 7.9202 10.0316 -4.6618 48 1 9.2339 8.9078 -4.2351 49 1 6.3369 8.7454 -3.2836 50 1 7.1188 7.6692 -4.4669 51 1 6.6692 6.9213 -0.1392 52 1 5.0924 5.0951 0.3435 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184323118.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Mar 25 2020 21:56:46 Heat of formation + Delta-G solvation = 138.459227 kcal Electronic energy + Delta-G solvation = -35445.193355 eV Core-core repulsion = 31033.668426 eV Total energy + Delta-G solvation = -4411.524929 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 363.199 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -43.64794 -41.47178 -39.83822 -39.24969 -37.79937 -36.43322 -34.75281 -33.55398 -32.89277 -32.72915 -31.64838 -30.56261 -30.05848 -27.62333 -26.65349 -25.81138 -25.19294 -24.38695 -23.21337 -22.80624 -21.62446 -21.47515 -21.02174 -19.27055 -18.75528 -18.52082 -18.32351 -17.20674 -17.00247 -16.87625 -16.41421 -16.34911 -15.96925 -15.89646 -15.85764 -15.50942 -15.25611 -15.08729 -14.94875 -14.74241 -14.57757 -14.28101 -13.99063 -13.85491 -13.74798 -13.29941 -13.20736 -13.03336 -12.77402 -12.68736 -12.45561 -12.31934 -12.18489 -12.06520 -11.85106 -11.68979 -11.60349 -11.48705 -10.94287 -10.85145 -10.69039 -10.52832 -10.23330 -10.08171 -9.92711 -8.81109 -8.67905 -8.44381 -7.91165 -0.02061 0.22869 0.31866 1.07296 1.31652 1.35475 1.63700 1.87238 2.26892 2.40293 2.65260 2.89852 3.06805 3.61091 3.77975 3.81743 3.85259 3.90463 3.97451 4.03057 4.08553 4.14384 4.19317 4.22165 4.25043 4.33934 4.42941 4.45391 4.46986 4.55057 4.56988 4.62279 4.66342 4.74267 4.78200 4.91207 4.92978 4.94617 4.95269 4.98464 5.08218 5.09764 5.16652 5.23188 5.29410 5.35946 5.45373 5.58860 5.61917 5.83114 5.86648 6.05481 6.11215 6.16848 6.28069 6.85602 7.20285 7.60665 Molecular weight = 363.20amu Principal moments of inertia in cm(-1) A = 0.021695 B = 0.002811 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.339531 B = 9959.949186 C =10399.657648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.129 4.129 3 C -0.109 4.109 4 H 0.042 0.958 5 C -0.203 4.203 6 C -0.086 4.086 7 O -0.897 6.897 8 Si 1.086 2.914 9 H -0.381 1.381 10 H -0.246 1.246 11 H -0.347 1.347 12 C 0.492 3.508 13 O -0.527 6.527 14 N -0.566 5.566 15 C 0.743 3.257 16 N -0.934 5.934 17 N -0.799 5.799 18 C 0.083 3.917 19 C -0.118 4.118 20 C -0.104 4.104 21 C 0.095 3.905 22 N -0.488 5.488 23 C 0.008 3.992 24 C 0.067 3.933 25 O -0.402 6.402 26 C 0.062 3.938 27 C 0.018 3.982 28 C -0.148 4.148 29 C -0.141 4.141 30 H 0.072 0.928 31 H 0.048 0.952 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.039 0.961 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.112 0.888 38 H 0.390 0.610 39 H 0.414 0.586 40 H 0.438 0.562 41 H 0.138 0.862 42 H 0.163 0.837 43 H 0.092 0.908 44 H 0.053 0.947 45 H 0.118 0.882 46 H 0.065 0.935 47 H 0.124 0.876 48 H 0.067 0.933 49 H 0.048 0.952 50 H 0.110 0.890 51 H 0.142 0.858 52 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.196 17.350 -17.619 24.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.166 4.166 3 C -0.129 4.129 4 H 0.060 0.940 5 C -0.261 4.261 6 C -0.186 4.186 7 O -0.843 6.843 8 Si 0.947 3.053 9 H -0.322 1.322 10 H -0.185 1.185 11 H -0.283 1.283 12 C 0.286 3.714 13 O -0.400 6.400 14 N -0.301 5.301 15 C 0.398 3.602 16 N -0.655 5.655 17 N -0.352 5.352 18 C -0.010 4.010 19 C -0.138 4.138 20 C -0.124 4.124 21 C -0.003 4.003 22 N -0.204 5.204 23 C -0.119 4.119 24 C -0.010 4.010 25 O -0.321 6.321 26 C -0.015 4.015 27 C -0.107 4.107 28 C -0.169 4.169 29 C -0.161 4.161 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.058 0.942 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.130 0.870 38 H 0.259 0.741 39 H 0.247 0.753 40 H 0.276 0.724 41 H 0.155 0.845 42 H 0.180 0.820 43 H 0.110 0.890 44 H 0.071 0.929 45 H 0.136 0.864 46 H 0.083 0.917 47 H 0.142 0.858 48 H 0.085 0.915 49 H 0.066 0.934 50 H 0.128 0.872 51 H 0.159 0.841 52 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.396 16.651 -18.001 24.561 hybrid contribution -0.468 0.410 2.035 2.128 sum 0.929 17.061 -15.966 23.385 Atomic orbital electron populations 1.21707 0.92399 1.02737 1.02375 1.21658 0.98529 0.95104 1.01324 1.21675 0.95922 0.97642 0.97619 0.93961 1.24522 1.02596 1.00302 0.98646 1.25765 0.96298 0.90181 1.06350 1.94973 1.87776 1.81853 1.19649 0.83017 0.77822 0.77743 0.66740 1.32235 1.18472 1.28278 1.25092 0.75630 0.90817 0.79869 1.90218 1.48648 1.57399 1.43763 1.45983 1.39761 1.34946 1.09376 1.18783 0.77604 0.89294 0.74524 1.69672 1.50419 0.98721 1.46709 1.43417 1.45809 1.10832 1.35105 1.18508 0.96108 0.90118 0.96244 1.20889 0.98973 0.99909 0.94068 1.20756 0.97868 0.93682 1.00114 1.19025 0.92671 0.95167 0.93447 1.59500 1.41243 1.10534 1.09138 1.23055 1.00437 0.95959 0.92492 1.22776 0.95275 0.92259 0.90721 1.87981 1.86067 1.35586 1.22423 1.22880 0.97978 0.93141 0.87495 1.23077 0.97747 0.95327 0.94568 1.21366 0.98248 0.99504 0.97771 1.21971 0.99741 0.94116 1.00317 0.90913 0.93269 0.90540 0.91650 0.94166 0.90041 0.90714 0.87031 0.74145 0.75331 0.72404 0.84470 0.81981 0.89014 0.92898 0.86369 0.91672 0.85849 0.91514 0.93411 0.87172 0.84083 0.84864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.29 9.73 71.98 0.70 -3.59 16 2 C -0.13 -5.70 4.37 30.60 0.13 -5.57 16 3 C -0.11 -5.37 1.98 -10.79 -0.02 -5.39 16 4 H 0.04 2.25 8.14 -2.38 -0.02 2.23 16 5 C -0.20 -7.41 5.72 71.98 0.41 -6.99 16 6 C -0.09 -5.27 0.63 29.85 0.02 -5.25 16 7 O -0.90 -69.64 16.95 -130.74 -2.22 -71.86 16 8 Si 1.09 61.43 18.96 68.60 1.30 62.73 16 9 H -0.38 -24.46 7.11 99.48 0.71 -23.75 16 10 H -0.25 -11.49 4.60 55.68 0.26 -11.24 16 11 H -0.35 -20.06 6.77 99.48 0.67 -19.39 16 12 C 0.49 28.16 5.41 87.66 0.47 28.63 16 13 O -0.53 -33.05 13.46 15.25 0.21 -32.85 16 14 N -0.57 -25.28 2.29 -590.00 -1.35 -26.63 16 15 C 0.74 27.30 2.77 260.20 0.72 28.02 16 16 N -0.93 -39.33 7.26 -156.72 -1.14 -40.47 16 17 N -0.80 -17.39 7.16 -154.76 -1.11 -18.50 16 18 C 0.08 3.24 6.00 38.06 0.23 3.47 16 19 C -0.12 -3.51 9.04 22.37 0.20 -3.31 16 20 C -0.10 -2.50 9.19 22.38 0.21 -2.29 16 21 C 0.09 2.42 5.64 38.17 0.22 2.63 16 22 N -0.49 -9.86 4.78 -694.16 -3.32 -13.17 16 23 C 0.01 0.14 4.33 86.32 0.37 0.52 16 24 C 0.07 1.00 7.01 72.02 0.50 1.51 16 25 O -0.40 -6.96 10.83 -148.98 -1.61 -8.57 16 26 C 0.06 0.78 7.01 72.02 0.50 1.28 16 27 C 0.02 0.27 5.41 86.32 0.47 0.73 16 28 C -0.15 -4.54 8.81 22.39 0.20 -4.34 16 29 C -0.14 -5.59 9.05 22.37 0.20 -5.39 16 30 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.08 2.01 7.15 -2.39 -0.02 2.00 16 33 H 0.07 2.76 5.16 -2.39 -0.01 2.75 16 34 H 0.04 2.05 7.87 -2.39 -0.02 2.04 16 35 H 0.08 2.39 7.80 -2.39 -0.02 2.37 16 36 H 0.08 2.80 2.25 -66.54 -0.15 2.65 16 37 H 0.11 3.83 5.12 -2.39 -0.01 3.82 16 38 H 0.39 17.86 0.04 -92.70 0.00 17.86 16 39 H 0.41 7.23 8.72 -92.71 -0.81 6.42 16 40 H 0.44 6.63 8.94 -92.71 -0.83 5.80 16 41 H 0.14 3.77 7.12 -2.91 -0.02 3.75 16 42 H 0.16 2.75 7.20 -2.91 -0.02 2.73 16 43 H 0.09 1.75 7.21 -2.39 -0.02 1.73 16 44 H 0.05 1.02 7.55 -2.39 -0.02 1.00 16 45 H 0.12 1.35 8.14 -2.38 -0.02 1.34 16 46 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 49 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 50 H 0.11 1.24 6.86 -2.39 -0.02 1.22 16 51 H 0.14 3.80 5.81 -2.91 -0.02 3.78 16 52 H 0.13 6.35 5.00 -9.92 -0.05 6.30 16 Total: -1.00 -98.10 367.20 -4.25 -102.35 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: -0.55 Total: 22.30 kcal Atomic # 6 Polarization: 19.13 SS G_CDS: 5.54 Total: 24.67 kcal Atomic # 7 Polarization: -91.86 SS G_CDS: -6.92 Total: -98.78 kcal Atomic # 8 Polarization: -109.65 SS G_CDS: -3.62 Total: -113.28 kcal Atomic # 14 Polarization: 61.43 SS G_CDS: 1.30 Total: 62.73 kcal Total: -98.10 -4.25 -102.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184323118.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 240.813 kcal (2) G-P(sol) polarization free energy of solvation -98.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds