Wall clock time and date at job start Wed Mar 25 2020 22:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46808 * 2 1 4 4 H 1.09000 * 109.47128 * 54.99859 * 3 2 1 5 5 C 1.52998 * 109.46866 * 294.99863 * 3 2 1 6 6 C 1.53004 * 109.47019 * 175.00221 * 3 2 1 7 7 O 1.42901 * 109.47064 * 64.99763 * 6 3 2 8 8 Si 1.86303 * 109.46841 * 304.99533 * 6 3 2 9 9 H 1.48503 * 109.46956 * 60.00319 * 8 6 3 10 10 H 1.48493 * 109.47064 * 179.97438 * 8 6 3 11 11 H 1.48495 * 109.47275 * 300.00411 * 8 6 3 12 12 C 1.50693 * 109.46968 * 184.99798 * 6 3 2 13 13 O 1.21287 * 120.00197 * 239.99555 * 12 6 3 14 14 N 1.34778 * 119.99975 * 59.99876 * 12 6 3 15 15 C 1.46502 * 119.99991 * 179.97438 * 14 12 6 16 16 C 1.52997 * 109.47224 * 180.02562 * 15 14 12 17 17 O 1.42893 * 109.47394 * 65.00073 * 16 15 14 18 Xx 1.42002 * 114.00222 * 186.05896 * 17 16 15 19 18 C 1.57000 * 119.99918 * 174.23015 * 18 17 16 20 19 C 1.39366 * 120.12007 * 171.89067 * 19 18 17 21 20 C 1.37980 * 119.88139 * 179.72191 * 20 19 18 22 21 C 1.38375 * 120.11807 * 0.54968 * 21 20 19 23 22 C 1.38379 * 120.23736 * 359.72045 * 22 21 20 24 23 C 1.37970 * 120.11903 * 0.02562 * 23 22 21 25 24 C 1.56991 * 120.00190 * 354.22916 * 18 17 16 26 25 C 1.39377 * 120.11853 * 309.60114 * 25 18 17 27 26 C 1.37977 * 119.88014 * 179.72079 * 26 25 18 28 27 C 1.38372 * 120.11594 * 0.54740 * 27 26 25 29 28 C 1.38368 * 120.24205 * 359.73079 * 28 27 26 30 29 C 1.37975 * 120.12282 * 359.97438 * 29 28 27 31 30 H 1.09001 * 109.47491 * 60.00329 * 1 2 3 32 31 H 1.09001 * 109.46947 * 179.97438 * 1 2 3 33 32 H 1.09000 * 109.47728 * 299.99931 * 1 2 3 34 33 H 1.08996 * 109.47128 * 240.00482 * 2 1 3 35 34 H 1.09001 * 109.47491 * 119.99671 * 2 1 3 36 35 H 1.09001 * 109.47453 * 60.00389 * 5 3 2 37 36 H 1.09001 * 109.46806 * 180.02562 * 5 3 2 38 37 H 1.09000 * 109.47243 * 299.99925 * 5 3 2 39 38 H 0.97001 * 120.00246 * 359.97438 * 14 12 6 40 39 H 1.09001 * 109.47545 * 300.00592 * 15 14 12 41 40 H 1.09002 * 109.47149 * 60.00348 * 15 14 12 42 41 H 1.09007 * 109.47138 * 185.00776 * 16 15 14 43 42 H 1.09004 * 109.47009 * 305.00005 * 16 15 14 44 43 H 1.08005 * 120.05734 * 359.96724 * 20 19 18 45 44 H 1.08005 * 119.94038 * 180.25034 * 21 20 19 46 45 H 1.07997 * 119.88048 * 179.70258 * 22 21 20 47 46 H 1.07996 * 119.93585 * 179.97438 * 23 22 21 48 47 H 1.08004 * 120.06101 * 179.97438 * 24 23 22 49 48 H 1.08004 * 120.05634 * 359.97438 * 26 25 18 50 49 H 1.07999 * 119.94273 * 180.25505 * 27 26 25 51 50 H 1.08000 * 119.88036 * 179.69576 * 28 27 26 52 51 H 1.08002 * 119.94306 * 179.97438 * 29 28 27 53 52 H 1.08001 * 120.06825 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6351 2.1265 -1.3074 6 6 3.5648 1.4445 0.1257 7 8 4.1391 0.8404 -1.0351 8 14 4.0643 0.4801 1.6394 9 1 3.5793 -0.9183 1.5177 10 1 5.5442 0.4813 1.7611 11 1 3.4673 1.1077 2.8455 12 6 4.0568 2.8634 0.2491 13 8 4.8240 3.3132 -0.5756 14 7 3.6445 3.6327 1.2761 15 6 4.1233 5.0120 1.3965 16 6 3.5087 5.6586 2.6395 17 8 3.9848 4.9899 3.8091 18 6 3.6877 4.6917 6.3651 19 6 3.2227 5.2152 7.5702 20 6 3.4998 4.5644 8.7548 21 6 4.2474 3.4000 8.7490 22 6 4.7163 2.8789 7.5559 23 6 4.4407 3.5189 6.3651 24 6 2.3733 6.6368 4.9928 25 6 2.7383 7.8320 4.3756 26 6 1.8561 8.8927 4.3555 27 6 0.6153 8.7751 4.9565 28 6 0.2500 7.5928 5.5756 29 6 1.1221 6.5239 5.5963 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 0.5488 2.1252 -1.3970 36 1 1.9988 3.1541 -1.3076 37 1 2.0698 1.5875 -2.1492 38 1 3.0307 3.2731 1.9356 39 1 5.2096 5.0131 1.4862 40 1 3.8314 5.5766 0.5109 41 1 3.7936 6.7100 2.6806 42 1 2.4227 5.5781 2.5916 43 1 2.6433 6.1267 7.5763 44 1 3.1365 4.9671 9.6889 45 1 4.4660 2.8963 9.6790 46 1 5.2997 1.9701 7.5571 47 1 4.8074 3.1115 5.4345 48 1 3.7085 7.9263 3.9104 49 1 2.1364 9.8178 3.8740 50 1 -0.0704 9.6094 4.9427 51 1 -0.7196 7.5065 6.0435 52 1 0.8362 5.6016 6.0802 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184325730.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Mar 25 2020 22:38:21 Heat of formation + Delta-G solvation = 84.297661 kcal Electronic energy + Delta-G solvation = -31643.479533 eV Core-core repulsion = 27466.850932 eV Total energy + Delta-G solvation = -4176.628600 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 357.190 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -40.40490 -40.01275 -39.76138 -37.36383 -36.33371 -33.62441 -32.51393 -32.29714 -32.01498 -31.45522 -30.99370 -29.96110 -29.09274 -26.50782 -24.65754 -23.73902 -23.37849 -22.96605 -22.73622 -22.34709 -21.44160 -19.91427 -18.06491 -17.63813 -17.30785 -16.93943 -16.54583 -16.21502 -15.92853 -15.86334 -15.77974 -15.71672 -15.50368 -15.04710 -14.80421 -14.58213 -14.55675 -14.25955 -14.09877 -13.90046 -13.86095 -13.82719 -13.46389 -13.25740 -13.18591 -12.93958 -12.90255 -12.82420 -12.65172 -12.28705 -12.20950 -12.13919 -12.11042 -11.67767 -11.57261 -11.29212 -11.03718 -10.50278 -10.18864 -10.14822 -10.05283 -9.99847 -9.83581 -9.42699 -9.07213 -8.12806 -7.62955 -5.49145 -2.10488 0.14946 0.15819 0.18942 0.20552 1.22956 1.32996 1.42218 1.99673 2.55423 2.61840 2.62196 2.77648 3.78443 3.80389 3.82430 3.85025 4.11032 4.12995 4.14735 4.19840 4.24151 4.25061 4.26194 4.28122 4.30438 4.37941 4.42957 4.51578 4.57231 4.61185 4.67123 4.79364 4.81345 4.87773 4.90212 4.91888 4.93844 4.96690 5.14312 5.16467 5.23847 5.27263 5.31262 5.34490 5.35183 5.39631 5.39943 5.43624 5.49963 5.63829 5.68854 5.70287 5.76846 5.82597 6.50051 6.83989 7.56391 8.03587 Molecular weight = 357.19amu Principal moments of inertia in cm(-1) A = 0.008210 B = 0.003173 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3409.636725 B = 8823.321285 C =10260.992688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.117 4.117 3 C -0.096 4.096 4 H 0.067 0.933 5 C -0.107 4.107 6 C -0.034 4.034 7 O -0.898 6.898 8 Si 0.939 3.061 9 H -0.254 1.254 10 H -0.325 1.325 11 H -0.244 1.244 12 C 0.476 3.524 13 O -0.608 6.608 14 N -0.719 5.719 15 C 0.105 3.895 16 C 0.101 3.899 17 O -0.651 6.651 18 C 0.077 3.923 19 C -0.135 4.135 20 C -0.086 4.086 21 C -0.124 4.124 22 C -0.097 4.097 23 C -0.139 4.139 24 C 0.073 3.927 25 C -0.145 4.145 26 C -0.089 4.089 27 C -0.124 4.124 28 C -0.083 4.083 29 C -0.138 4.138 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.037 0.963 34 H 0.051 0.949 35 H 0.076 0.924 36 H 0.014 0.986 37 H 0.025 0.975 38 H 0.401 0.599 39 H 0.022 0.978 40 H 0.045 0.955 41 H 0.040 0.960 42 H 0.015 0.985 43 H 0.161 0.839 44 H 0.185 0.815 45 H 0.172 0.828 46 H 0.156 0.844 47 H 0.116 0.884 48 H 0.136 0.864 49 H 0.165 0.835 50 H 0.171 0.829 51 H 0.179 0.821 52 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.489 16.897 31.082 38.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.154 4.154 3 C -0.115 4.115 4 H 0.085 0.915 5 C -0.164 4.164 6 C -0.136 4.136 7 O -0.844 6.844 8 Si 0.766 3.234 9 H -0.179 1.179 10 H -0.254 1.254 11 H -0.169 1.169 12 C 0.267 3.733 13 O -0.489 6.489 14 N -0.375 5.375 15 C -0.019 4.019 16 C 0.017 3.983 17 O -0.598 6.598 18 C 0.076 3.924 19 C -0.152 4.152 20 C -0.103 4.103 21 C -0.141 4.141 22 C -0.115 4.115 23 C -0.157 4.157 24 C 0.070 3.930 25 C -0.163 4.163 26 C -0.106 4.106 27 C -0.141 4.141 28 C -0.100 4.100 29 C -0.156 4.156 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.033 0.967 37 H 0.044 0.956 38 H 0.236 0.764 39 H 0.040 0.960 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.033 0.967 43 H 0.179 0.821 44 H 0.202 0.798 45 H 0.190 0.810 46 H 0.173 0.827 47 H 0.134 0.866 48 H 0.154 0.846 49 H 0.183 0.817 50 H 0.189 0.811 51 H 0.197 0.803 52 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -14.544 16.513 31.205 38.183 hybrid contribution 1.299 -0.297 -1.885 2.308 sum -13.246 16.216 29.320 36.029 Atomic orbital electron populations 1.21769 0.92959 1.02297 1.02516 1.21510 0.97475 0.95845 1.00617 1.21508 0.96182 0.96569 0.97275 0.91460 1.21423 0.99572 0.97510 0.97927 1.24251 0.94812 0.88889 1.05630 1.94922 1.79746 1.74665 1.35090 0.86404 0.77125 0.82792 0.77046 1.17889 1.25366 1.16941 1.24200 0.79427 0.90735 0.78971 1.90347 1.38621 1.75673 1.44306 1.46284 1.49609 1.13362 1.28282 1.22057 0.97596 0.83435 0.98852 1.21633 0.94447 0.94503 0.87714 1.94826 1.75043 1.63927 1.25969 1.32460 0.97322 0.89504 0.73137 1.22163 1.02809 1.03181 0.87070 1.21869 0.97233 0.94630 0.96569 1.21856 0.96937 0.96482 0.98856 1.21630 0.99932 1.00350 0.89579 1.21545 0.99812 0.94979 0.99404 1.32105 0.85033 0.77252 0.98657 1.21656 1.02725 0.90569 1.01321 1.21629 0.92764 0.97370 0.98845 1.21882 0.96558 0.99300 0.96388 1.21748 0.99260 0.90482 0.98520 1.21863 0.89813 1.02021 1.01915 0.92335 0.91480 0.91171 0.94412 0.93055 0.90553 0.96685 0.95624 0.76353 0.95976 0.93714 0.94239 0.96746 0.82138 0.79797 0.81020 0.82669 0.86648 0.84603 0.81726 0.81138 0.80342 0.82784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.59 9.67 71.98 0.70 -3.90 16 2 C -0.12 -5.43 4.78 30.60 0.15 -5.28 16 3 C -0.10 -5.00 1.40 -10.79 -0.02 -5.01 16 4 H 0.07 3.04 7.35 -2.39 -0.02 3.03 16 5 C -0.11 -5.55 8.57 71.98 0.62 -4.93 16 6 C -0.03 -2.19 0.33 29.85 0.01 -2.18 16 7 O -0.90 -71.39 15.95 -129.94 -2.07 -73.46 16 8 Si 0.94 52.72 24.09 68.60 1.65 54.37 16 9 H -0.25 -13.33 6.27 99.48 0.62 -12.71 16 10 H -0.32 -20.27 7.11 99.48 0.71 -19.56 16 11 H -0.24 -11.55 7.10 99.48 0.71 -10.85 16 12 C 0.48 30.89 4.99 87.65 0.44 31.33 16 13 O -0.61 -45.43 16.50 15.99 0.26 -45.17 16 14 N -0.72 -38.76 4.99 -463.06 -2.31 -41.07 16 15 C 0.10 5.16 6.06 86.38 0.52 5.68 16 16 C 0.10 4.02 5.04 71.98 0.36 4.39 16 17 O -0.65 -28.13 13.31 -148.98 -1.98 -30.11 16 18 C 0.08 1.88 9.45 22.82 0.22 2.09 16 19 C -0.13 -1.89 9.15 22.48 0.21 -1.69 16 20 C -0.09 -0.74 10.03 22.24 0.22 -0.52 16 21 C -0.12 -1.29 10.04 22.34 0.22 -1.06 16 22 C -0.10 -1.71 10.03 22.24 0.22 -1.48 16 23 C -0.14 -3.71 9.76 22.48 0.22 -3.49 16 24 C 0.07 1.54 7.20 22.82 0.16 1.71 16 25 C -0.15 -2.74 8.40 22.48 0.19 -2.55 16 26 C -0.09 -0.99 10.03 22.24 0.22 -0.77 16 27 C -0.12 -0.85 10.04 22.33 0.22 -0.63 16 28 C -0.08 -0.59 10.03 22.24 0.22 -0.37 16 29 C -0.14 -1.84 8.42 22.48 0.19 -1.65 16 30 H 0.06 1.87 6.57 -2.39 -0.02 1.85 16 31 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.04 1.98 7.96 -2.39 -0.02 1.96 16 34 H 0.05 2.33 5.04 -2.39 -0.01 2.32 16 35 H 0.08 3.11 6.57 -2.39 -0.02 3.09 16 36 H 0.01 0.78 7.38 -2.39 -0.02 0.76 16 37 H 0.02 1.48 7.56 -2.39 -0.02 1.46 16 38 H 0.40 19.74 7.07 -92.71 -0.66 19.08 16 39 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.04 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.04 1.40 5.36 -2.38 -0.01 1.39 16 42 H 0.01 0.56 7.75 -2.38 -0.02 0.55 16 43 H 0.16 1.50 6.42 -2.91 -0.02 1.48 16 44 H 0.18 0.08 8.06 -2.91 -0.02 0.06 16 45 H 0.17 0.59 8.06 -2.91 -0.02 0.57 16 46 H 0.16 2.19 8.06 -2.91 -0.02 2.16 16 47 H 0.12 4.00 7.80 -2.91 -0.02 3.97 16 48 H 0.14 2.98 6.46 -2.91 -0.02 2.96 16 49 H 0.17 1.04 8.06 -2.91 -0.02 1.02 16 50 H 0.17 0.08 8.06 -2.91 -0.02 0.06 16 51 H 0.18 0.05 8.06 -2.91 -0.02 0.02 16 52 H 0.15 1.67 7.91 -2.91 -0.02 1.65 16 Total: -1.00 -114.04 426.85 1.79 -112.25 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: 0.93 Total: 13.51 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: 5.30 Total: 9.68 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: -2.31 Total: -41.07 kcal Atomic # 8 Polarization: -144.95 SS G_CDS: -3.79 Total: -148.74 kcal Atomic # 14 Polarization: 52.72 SS G_CDS: 1.65 Total: 54.37 kcal Total: -114.04 1.79 -112.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184325730.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.547 kcal (2) G-P(sol) polarization free energy of solvation -114.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -112.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds