Wall clock time and date at job start Wed Mar 25 2020 22:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47078 * 2 1 4 4 H 1.08993 * 109.47198 * 304.99877 * 3 2 1 5 5 C 1.53000 * 109.47358 * 64.99724 * 3 2 1 6 6 C 1.52999 * 109.46989 * 184.99589 * 3 2 1 7 7 O 1.42908 * 109.46919 * 53.94469 * 6 3 2 8 8 Si 1.86300 * 109.47384 * 293.94356 * 6 3 2 9 9 H 1.48497 * 109.46791 * 299.99982 * 8 6 3 10 10 H 1.48500 * 109.46893 * 59.99931 * 8 6 3 11 11 H 1.48503 * 109.47064 * 179.97438 * 8 6 3 12 12 C 1.50702 * 109.47280 * 173.94026 * 6 3 2 13 13 O 1.21279 * 120.00202 * 125.43420 * 12 6 3 14 14 N 1.34777 * 120.00024 * 305.44696 * 12 6 3 15 15 C 1.46502 * 120.00082 * 175.08006 * 14 12 6 16 16 C 1.53008 * 109.46835 * 179.97438 * 15 14 12 17 17 O 1.42899 * 109.47124 * 65.00122 * 16 15 14 18 Xx 1.41996 * 113.99962 * 186.36500 * 17 16 15 19 18 C 1.56998 * 120.00049 * 174.27170 * 18 17 16 20 19 C 1.39380 * 120.11700 * 178.50586 * 19 18 17 21 20 C 1.37978 * 119.87528 * 179.72645 * 20 19 18 22 21 C 1.38373 * 120.11818 * 0.54724 * 21 20 19 23 22 C 1.38375 * 120.24082 * 359.72812 * 22 21 20 24 23 C 1.37972 * 120.12010 * 359.97438 * 23 22 21 25 24 C 1.57003 * 119.99792 * 354.27349 * 18 17 16 26 25 C 1.39372 * 120.11906 * 313.13469 * 25 18 17 27 26 C 1.37980 * 119.87582 * 179.72253 * 26 25 18 28 27 C 1.38369 * 120.11968 * 0.55265 * 27 26 25 29 28 C 1.38378 * 120.23935 * 359.72387 * 28 27 26 30 29 C 1.37968 * 120.11974 * 359.97438 * 29 28 27 31 30 H 1.08994 * 109.47240 * 60.00453 * 1 2 3 32 31 H 1.09003 * 109.46991 * 180.02562 * 1 2 3 33 32 H 1.08997 * 109.47312 * 299.99802 * 1 2 3 34 33 H 1.09001 * 109.47268 * 239.99446 * 2 1 3 35 34 H 1.09006 * 109.46661 * 119.99869 * 2 1 3 36 35 H 1.09004 * 109.47059 * 293.28466 * 5 3 2 37 36 H 1.09006 * 109.46966 * 53.28200 * 5 3 2 38 37 H 1.08994 * 109.47550 * 173.28208 * 5 3 2 39 38 H 0.97004 * 119.99657 * 355.07632 * 14 12 6 40 39 H 1.08997 * 109.46981 * 299.99749 * 15 14 12 41 40 H 1.09000 * 109.46645 * 59.99891 * 15 14 12 42 41 H 1.09003 * 109.46750 * 185.00063 * 16 15 14 43 42 H 1.08995 * 109.47295 * 304.99599 * 16 15 14 44 43 H 1.07999 * 120.06051 * 359.97438 * 20 19 18 45 44 H 1.08000 * 119.93454 * 180.25468 * 21 20 19 46 45 H 1.07993 * 119.87749 * 179.70012 * 22 21 20 47 46 H 1.07997 * 119.93642 * 179.97438 * 23 22 21 48 47 H 1.08001 * 120.06023 * 179.97438 * 24 23 22 49 48 H 1.07994 * 120.06010 * 359.97438 * 26 25 18 50 49 H 1.07998 * 119.94251 * 180.25939 * 27 26 25 51 50 H 1.08001 * 119.87974 * 179.69993 * 28 27 26 52 51 H 1.08005 * 119.93896 * 179.97438 * 29 28 27 53 52 H 1.08002 * 120.05841 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1266 1.3073 6 6 3.5648 1.4443 -0.1256 7 8 3.9491 0.6838 -1.2729 8 14 4.3147 0.6859 1.4019 9 1 3.9153 1.4762 2.5939 10 1 3.8318 -0.7107 1.5492 11 1 5.7947 0.6871 1.2796 12 6 4.0549 2.8615 -0.2753 13 8 4.8957 3.2957 0.4832 14 7 3.5585 3.6466 -1.2519 15 6 3.9539 5.0550 -1.3315 16 6 3.2538 5.7147 -2.5214 17 8 1.8429 5.7303 -2.2951 18 6 -0.4832 6.1416 -3.3585 19 6 -1.2298 6.6238 -4.4321 20 6 -2.6079 6.5711 -4.3898 21 6 -3.2490 6.0510 -3.2793 22 6 -2.5127 5.5761 -2.2082 23 6 -1.1341 5.6185 -2.2427 24 6 1.8163 6.7559 -4.6738 25 6 2.8548 7.6748 -4.5334 26 6 3.4975 8.1619 -5.6529 27 6 3.1052 7.7485 -6.9138 28 6 2.0709 6.8408 -7.0591 29 6 1.4255 6.3426 -5.9461 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8901 35 1 0.5508 2.2322 1.3415 36 1 1.9682 1.5229 2.1516 37 1 2.0980 3.1119 1.3603 38 1 2.9396 3.2790 -1.9021 39 1 3.6670 5.5654 -0.4121 40 1 5.0338 5.1223 -1.4628 41 1 3.6150 6.7369 -2.6343 42 1 3.4701 5.1507 -3.4286 43 1 -0.7304 7.0344 -5.2973 44 1 -3.1872 6.9407 -5.2229 45 1 -4.3279 6.0160 -3.2482 46 1 -3.0182 5.1717 -1.3438 47 1 -0.5604 5.2480 -1.4060 48 1 3.1585 8.0018 -3.5500 49 1 4.3051 8.8708 -5.5452 50 1 3.6078 8.1360 -7.7877 51 1 1.7684 6.5217 -8.0456 52 1 0.6181 5.6344 -6.0607 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184325731.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Mar 25 2020 22:40:27 Heat of formation + Delta-G solvation = 84.949926 kcal Electronic energy + Delta-G solvation = -31840.267518 eV Core-core repulsion = 27663.667202 eV Total energy + Delta-G solvation = -4176.600316 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 357.190 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -40.52839 -40.03346 -39.74798 -37.42025 -36.41641 -33.66531 -32.55047 -32.36576 -31.98035 -31.45415 -30.96837 -30.47104 -28.87510 -25.98046 -24.71274 -23.83488 -23.35575 -22.98805 -22.72833 -22.38328 -21.42375 -20.29798 -18.16230 -17.63020 -17.36223 -17.08521 -16.35804 -15.96325 -15.93214 -15.83402 -15.76664 -15.68150 -15.34426 -15.27584 -14.87695 -14.79609 -14.51745 -14.32759 -14.13706 -14.05930 -13.88677 -13.84020 -13.39014 -13.22441 -13.17559 -12.93283 -12.89677 -12.79848 -12.68626 -12.36163 -12.22706 -12.10014 -11.98920 -11.66223 -11.47295 -11.31208 -10.99712 -10.80281 -10.17576 -10.14934 -10.06739 -9.98172 -9.84178 -9.43457 -9.07806 -8.20853 -7.77316 -5.48799 -2.10270 0.15154 0.15558 0.18246 0.21938 1.30147 1.47076 1.58279 2.05654 2.32550 2.61087 2.62977 2.94990 3.77981 3.79756 3.81161 3.86082 4.10031 4.11341 4.13386 4.24294 4.24733 4.25928 4.26978 4.28879 4.30801 4.31658 4.40392 4.49371 4.54119 4.61942 4.62004 4.70206 4.77025 4.78592 4.87423 4.92373 4.94758 5.09513 5.10466 5.12295 5.22993 5.24434 5.26003 5.33891 5.36278 5.37948 5.38421 5.43871 5.47848 5.61679 5.69311 5.70257 5.78051 5.82931 6.46852 6.82230 7.43900 7.78195 Molecular weight = 357.19amu Principal moments of inertia in cm(-1) A = 0.008580 B = 0.003257 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3262.460882 B = 8594.343742 C =10762.852811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 C -0.095 4.095 4 H 0.050 0.950 5 C -0.146 4.146 6 C -0.036 4.036 7 O -0.899 6.899 8 Si 0.975 3.025 9 H -0.277 1.277 10 H -0.275 1.275 11 H -0.328 1.328 12 C 0.494 3.506 13 O -0.622 6.622 14 N -0.699 5.699 15 C 0.105 3.895 16 C 0.101 3.899 17 O -0.644 6.644 18 C 0.086 3.914 19 C -0.142 4.142 20 C -0.086 4.086 21 C -0.123 4.123 22 C -0.092 4.092 23 C -0.132 4.132 24 C 0.058 3.942 25 C -0.148 4.148 26 C -0.091 4.091 27 C -0.128 4.128 28 C -0.086 4.086 29 C -0.145 4.145 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.043 0.957 34 H 0.043 0.957 35 H 0.085 0.915 36 H 0.050 0.950 37 H 0.028 0.972 38 H 0.401 0.599 39 H 0.039 0.961 40 H 0.040 0.960 41 H 0.045 0.955 42 H -0.001 1.001 43 H 0.161 0.839 44 H 0.184 0.816 45 H 0.174 0.826 46 H 0.163 0.837 47 H 0.124 0.876 48 H 0.139 0.861 49 H 0.165 0.835 50 H 0.171 0.829 51 H 0.178 0.822 52 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.507 19.246 -17.157 32.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.147 4.147 3 C -0.115 4.115 4 H 0.068 0.932 5 C -0.203 4.203 6 C -0.137 4.137 7 O -0.848 6.848 8 Si 0.808 3.192 9 H -0.204 1.204 10 H -0.201 1.201 11 H -0.258 1.258 12 C 0.285 3.715 13 O -0.509 6.509 14 N -0.349 5.349 15 C -0.019 4.019 16 C 0.017 3.983 17 O -0.591 6.591 18 C 0.085 3.915 19 C -0.159 4.159 20 C -0.103 4.103 21 C -0.140 4.140 22 C -0.109 4.109 23 C -0.150 4.150 24 C 0.055 3.945 25 C -0.165 4.165 26 C -0.108 4.108 27 C -0.145 4.145 28 C -0.103 4.103 29 C -0.163 4.163 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.103 0.897 36 H 0.069 0.931 37 H 0.048 0.952 38 H 0.235 0.765 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.063 0.937 42 H 0.017 0.983 43 H 0.178 0.822 44 H 0.201 0.799 45 H 0.192 0.808 46 H 0.180 0.820 47 H 0.142 0.858 48 H 0.156 0.844 49 H 0.183 0.817 50 H 0.188 0.812 51 H 0.195 0.805 52 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -19.823 19.071 -16.114 31.879 hybrid contribution 1.444 -0.384 0.400 1.546 sum -18.379 18.686 -15.714 30.560 Atomic orbital electron populations 1.21739 0.93412 1.02056 1.02108 1.21366 0.96959 0.95843 1.00567 1.21515 0.96985 0.96451 0.96533 0.93174 1.21926 1.02061 0.99073 0.97227 1.24645 0.95614 0.87846 1.05554 1.94929 1.87451 1.66327 1.36080 0.85721 0.76960 0.78948 0.77611 1.20387 1.20094 1.25752 1.23691 0.79537 0.90365 0.77904 1.90288 1.36240 1.77010 1.47326 1.45762 1.47936 1.09950 1.31274 1.22118 0.97214 0.82049 1.00569 1.21649 0.90781 0.94903 0.90952 1.94795 1.12254 1.88542 1.63477 1.32204 0.65435 0.99202 0.94685 1.22211 0.92400 1.02220 0.99068 1.21848 0.90228 0.98200 1.00064 1.21897 1.02629 0.97006 0.92511 1.21657 0.88949 0.99200 1.01122 1.21572 0.93457 1.01067 0.98938 1.32404 0.93478 0.92139 0.76516 1.21696 0.95585 0.98080 1.01170 1.21649 0.99040 0.99942 0.90192 1.21868 0.97094 0.97163 0.98373 1.21756 0.94885 0.95949 0.97718 1.21873 1.03683 1.03139 0.87611 0.92877 0.91589 0.91358 0.93851 0.93795 0.89665 0.93063 0.95233 0.76477 0.94225 0.94209 0.93743 0.98287 0.82209 0.79865 0.80827 0.81992 0.85815 0.84364 0.81731 0.81197 0.80477 0.82876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.75 9.67 71.98 0.70 -4.05 16 2 C -0.11 -5.27 4.80 30.59 0.15 -5.12 16 3 C -0.10 -5.05 1.84 -10.80 -0.02 -5.07 16 4 H 0.05 2.69 7.19 -2.39 -0.02 2.67 16 5 C -0.15 -6.66 7.83 71.98 0.56 -6.10 16 6 C -0.04 -2.28 0.50 29.85 0.01 -2.26 16 7 O -0.90 -67.65 16.64 -148.98 -2.48 -70.13 16 8 Si 0.97 59.16 21.94 68.60 1.51 60.67 16 9 H -0.28 -15.37 6.54 99.48 0.65 -14.72 16 10 H -0.27 -15.46 6.52 99.48 0.65 -14.81 16 11 H -0.33 -21.79 7.11 99.48 0.71 -21.08 16 12 C 0.49 31.75 5.55 87.66 0.49 32.23 16 13 O -0.62 -42.07 14.90 -3.03 -0.05 -42.12 16 14 N -0.70 -40.06 5.28 -463.05 -2.45 -42.51 16 15 C 0.10 5.26 6.07 86.38 0.52 5.78 16 16 C 0.10 4.29 4.95 71.98 0.36 4.65 16 17 O -0.64 -28.47 13.28 -148.98 -1.98 -30.45 16 18 C 0.09 2.14 9.48 22.82 0.22 2.36 16 19 C -0.14 -2.13 8.90 22.48 0.20 -1.93 16 20 C -0.09 -0.78 10.03 22.24 0.22 -0.55 16 21 C -0.12 -1.20 10.04 22.33 0.22 -0.98 16 22 C -0.09 -1.47 10.03 22.24 0.22 -1.24 16 23 C -0.13 -3.36 9.75 22.48 0.22 -3.14 16 24 C 0.06 1.41 7.53 22.82 0.17 1.58 16 25 C -0.15 -3.25 8.39 22.48 0.19 -3.06 16 26 C -0.09 -1.30 10.03 22.24 0.22 -1.08 16 27 C -0.13 -1.30 10.04 22.33 0.22 -1.08 16 28 C -0.09 -0.92 10.03 22.24 0.22 -0.69 16 29 C -0.15 -2.44 8.09 22.48 0.18 -2.26 16 30 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.07 2.09 6.72 -2.39 -0.02 2.07 16 33 H 0.04 2.35 7.37 -2.39 -0.02 2.34 16 34 H 0.04 2.09 6.13 -2.38 -0.01 2.07 16 35 H 0.08 3.13 6.90 -2.39 -0.02 3.11 16 36 H 0.05 2.28 5.77 -2.38 -0.01 2.26 16 37 H 0.03 1.43 7.22 -2.39 -0.02 1.41 16 38 H 0.40 22.96 7.65 -92.71 -0.71 22.25 16 39 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.05 1.66 5.15 -2.39 -0.01 1.65 16 42 H 0.00 -0.03 7.73 -2.39 -0.02 -0.05 16 43 H 0.16 1.75 5.73 -2.91 -0.02 1.73 16 44 H 0.18 0.18 8.06 -2.91 -0.02 0.15 16 45 H 0.17 0.46 8.06 -2.91 -0.02 0.44 16 46 H 0.16 1.88 8.06 -2.91 -0.02 1.85 16 47 H 0.12 3.98 7.77 -2.91 -0.02 3.95 16 48 H 0.14 3.37 6.09 -2.91 -0.02 3.36 16 49 H 0.17 1.49 8.06 -2.91 -0.02 1.47 16 50 H 0.17 0.60 8.06 -2.91 -0.02 0.58 16 51 H 0.18 0.64 8.06 -2.91 -0.02 0.62 16 52 H 0.15 2.16 7.24 -2.91 -0.02 2.14 16 Total: -1.00 -104.04 421.38 0.70 -103.34 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 0.86 Total: 13.20 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: 5.29 Total: 8.01 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: -2.45 Total: -42.51 kcal Atomic # 8 Polarization: -138.20 SS G_CDS: -4.50 Total: -142.70 kcal Atomic # 14 Polarization: 59.16 SS G_CDS: 1.51 Total: 60.67 kcal Total: -104.04 0.70 -103.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184325731.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.288 kcal (2) G-P(sol) polarization free energy of solvation -104.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -103.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds