Wall clock time and date at job start Wed Mar 25 2020 22:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.21280 * 1 3 3 N 1.34779 * 120.00089 * 2 1 4 4 C 1.46494 * 120.00093 * 359.97438 * 3 2 1 5 5 C 1.52998 * 109.47209 * 179.97438 * 4 3 2 6 6 O 1.42907 * 109.46833 * 65.00230 * 5 4 3 7 Xx 1.41998 * 113.99849 * 186.05466 * 6 5 4 8 7 C 1.56993 * 120.00395 * 354.23230 * 7 6 5 9 8 C 1.39384 * 120.11602 * 309.58758 * 8 7 6 10 9 C 1.37973 * 119.87674 * 179.78941 * 9 8 7 11 10 C 1.38370 * 120.11990 * 0.46552 * 10 9 8 12 11 C 1.38370 * 120.24252 * 359.78538 * 11 10 9 13 12 C 1.37980 * 120.11806 * 359.97438 * 12 11 10 14 13 C 1.57004 * 119.99685 * 174.22997 * 7 6 5 15 14 C 1.39369 * 120.11730 * 171.88625 * 14 7 6 16 15 C 1.37975 * 119.88053 * 179.79063 * 15 14 7 17 16 C 1.38380 * 120.11669 * 0.45971 * 16 15 14 18 17 C 1.38375 * 120.23985 * 359.79207 * 17 16 15 19 18 C 1.37979 * 120.11747 * 359.97256 * 18 17 16 20 19 C 1.50699 * 119.99974 * 179.97438 * 2 1 3 21 20 O 1.42904 * 109.47240 * 0.02562 * 20 2 1 22 21 Si 1.86301 * 109.47184 * 120.00395 * 20 2 1 23 22 H 1.48502 * 109.46861 * 60.00085 * 22 20 2 24 23 H 1.48503 * 109.47328 * 180.02562 * 22 20 2 25 24 H 1.48496 * 109.47299 * 300.00739 * 22 20 2 26 25 C 1.50701 * 109.47510 * 240.00634 * 20 2 1 27 26 C 1.34514 * 125.78740 * 95.00103 * 26 20 2 28 27 C 1.41384 * 106.84008 * 180.02562 * 27 26 20 29 28 C 1.34514 * 106.83712 * 359.97438 * 28 27 26 30 29 O 1.34298 * 125.79079 * 274.69631 * 26 20 2 31 30 H 0.96996 * 119.99703 * 179.97438 * 3 2 1 32 31 H 1.09006 * 109.46967 * 60.00319 * 4 3 2 33 32 H 1.09000 * 109.47087 * 300.00650 * 4 3 2 34 33 H 1.08995 * 109.47469 * 305.00218 * 5 4 3 35 34 H 1.09005 * 109.47307 * 184.99915 * 5 4 3 36 35 H 1.08004 * 120.05609 * 0.02562 * 9 8 7 37 36 H 1.08003 * 119.93826 * 180.22561 * 10 9 8 38 37 H 1.08005 * 119.87923 * 179.76733 * 11 10 9 39 38 H 1.07998 * 119.94310 * 179.97438 * 12 11 10 40 39 H 1.08001 * 120.05983 * 179.97438 * 13 12 11 41 40 H 1.08005 * 120.06091 * 0.02562 * 15 14 7 42 41 H 1.07999 * 119.94180 * 180.23343 * 16 15 14 43 42 H 1.07998 * 119.88051 * 179.77019 * 17 16 15 44 43 H 1.07992 * 119.94194 * 179.97438 * 18 17 16 45 44 H 1.07997 * 120.05823 * 179.97438 * 19 18 17 46 45 H 1.08004 * 126.57900 * 359.96481 * 27 26 20 47 46 H 1.07999 * 126.57804 * 179.97438 * 28 27 26 48 47 H 1.08004 * 125.78390 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.2128 0.0000 0.0000 3 7 1.8867 1.1672 0.0000 4 6 1.1543 2.4359 -0.0006 5 6 2.1485 3.5988 0.0002 6 8 2.8917 3.5908 -1.2204 7 6 4.1044 5.5860 -0.0982 8 6 3.0103 6.3333 0.3345 9 6 3.1608 7.2397 1.3637 10 6 4.3973 7.4146 1.9597 11 6 5.4880 6.6791 1.5306 12 6 5.3475 5.7663 0.5054 13 6 4.9294 4.5728 -2.4830 14 6 5.8488 5.6117 -2.6165 15 6 6.7204 5.6250 -3.6860 16 6 6.6764 4.6144 -4.6302 17 6 5.7620 3.5833 -4.5054 18 6 4.8891 3.5577 -3.4371 19 6 1.9663 -1.3051 0.0006 20 8 1.0377 -2.3913 0.0005 21 14 3.0375 -1.4044 -1.5205 22 1 4.0025 -0.2757 -1.5208 23 1 3.7795 -2.6908 -1.5202 24 1 2.1839 -1.3261 -2.7330 25 6 2.8326 -1.3845 1.2311 26 6 2.5006 -1.9821 2.3896 27 6 3.5990 -1.8181 3.2646 28 6 4.5367 -1.1307 2.5882 29 8 4.0693 -0.8758 1.3552 30 1 2.8567 1.1671 0.0004 31 1 0.5273 2.4939 0.8892 32 1 0.5279 2.4934 -0.8907 33 1 2.8320 3.4920 0.8425 34 1 1.6064 4.5403 0.0893 35 1 2.0455 6.2002 -0.1325 36 1 2.3129 7.8167 1.7022 37 1 4.5116 8.1279 2.7625 38 1 6.4510 6.8197 1.9988 39 1 6.1996 5.1931 0.1709 40 1 5.8815 6.4029 -1.8820 41 1 7.4358 6.4276 -3.7884 42 1 7.3579 4.6306 -5.4679 43 1 5.7316 2.7973 -5.2453 44 1 4.1756 2.7527 -3.3408 45 1 1.5726 -2.4889 2.6096 46 1 3.6712 -2.1761 4.2809 47 1 5.5034 -0.8376 2.9703 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001142287335.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Mar 25 2020 22:49:45 Heat of formation + Delta-G solvation = 115.086986 kcal Electronic energy + Delta-G solvation = -32112.704001 eV Core-core repulsion = 27700.662769 eV Total energy + Delta-G solvation = -4412.041232 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 367.142 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -43.30366 -40.31614 -40.00627 -39.75594 -36.44043 -34.44849 -33.73785 -33.27728 -32.29298 -32.01049 -31.45203 -30.98932 -29.97644 -29.07838 -25.94537 -23.77277 -23.41924 -22.96138 -22.74011 -22.60790 -22.38829 -21.91740 -20.68875 -18.55278 -18.04351 -17.62342 -17.45227 -17.08695 -16.57471 -16.28813 -15.92697 -15.87605 -15.82959 -15.72668 -15.70442 -15.14349 -14.81267 -14.57708 -14.51208 -14.19343 -14.10833 -13.89305 -13.84916 -13.64781 -13.60537 -13.39620 -13.28889 -13.19042 -12.93735 -12.78237 -12.41255 -12.20275 -12.13625 -12.06146 -11.99901 -11.08061 -10.68558 -10.18129 -10.14308 -10.04856 -9.99792 -9.95410 -9.42323 -9.23385 -9.08234 -8.67323 -8.00699 -5.48704 -2.10003 0.15648 0.16308 0.19269 0.21169 0.89155 1.14271 1.30655 1.37119 1.69884 1.93334 2.15456 2.52858 2.61880 2.62756 2.67681 3.78993 3.80919 3.82697 3.85854 4.12305 4.12962 4.17845 4.24604 4.25221 4.26379 4.27515 4.29187 4.32852 4.34614 4.48747 4.53472 4.57081 4.62010 4.69754 4.82672 4.91695 4.95068 5.03334 5.11508 5.24770 5.27249 5.27633 5.34751 5.36172 5.39777 5.40608 5.44181 5.67043 5.69655 5.70616 5.77546 6.36628 6.49494 6.65862 7.29402 7.69446 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.007925 B = 0.003202 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3532.096408 B = 8742.414598 C =10129.465945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.594 6.594 2 C 0.483 3.517 3 N -0.713 5.713 4 C 0.103 3.897 5 C 0.102 3.898 6 O -0.652 6.652 7 C 0.071 3.929 8 C -0.145 4.145 9 C -0.089 4.089 10 C -0.125 4.125 11 C -0.083 4.083 12 C -0.139 4.139 13 C 0.080 3.920 14 C -0.135 4.135 15 C -0.086 4.086 16 C -0.124 4.124 17 C -0.096 4.096 18 C -0.139 4.139 19 C 0.009 3.991 20 O -0.879 6.879 21 Si 0.981 3.019 22 H -0.232 1.232 23 H -0.263 1.263 24 H -0.291 1.291 25 C -0.025 4.025 26 C -0.232 4.232 27 C -0.221 4.221 28 C -0.051 4.051 29 O -0.191 6.191 30 H 0.403 0.597 31 H 0.045 0.955 32 H 0.032 0.968 33 H 0.010 0.990 34 H 0.043 0.957 35 H 0.137 0.863 36 H 0.165 0.835 37 H 0.171 0.829 38 H 0.179 0.821 39 H 0.154 0.846 40 H 0.161 0.839 41 H 0.185 0.815 42 H 0.173 0.827 43 H 0.158 0.842 44 H 0.119 0.881 45 H 0.107 0.893 46 H 0.176 0.824 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.561 30.346 -0.418 39.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.474 6.474 2 C 0.273 3.727 3 N -0.368 5.368 4 C -0.021 4.021 5 C 0.018 3.982 6 O -0.599 6.599 7 C 0.068 3.932 8 C -0.163 4.163 9 C -0.107 4.107 10 C -0.142 4.142 11 C -0.101 4.101 12 C -0.157 4.157 13 C 0.080 3.920 14 C -0.152 4.152 15 C -0.103 4.103 16 C -0.141 4.141 17 C -0.114 4.114 18 C -0.156 4.156 19 C -0.091 4.091 20 O -0.825 6.825 21 Si 0.802 3.198 22 H -0.156 1.156 23 H -0.187 1.187 24 H -0.217 1.217 25 C -0.076 4.076 26 C -0.251 4.251 27 C -0.239 4.239 28 C -0.117 4.117 29 O -0.089 6.089 30 H 0.238 0.762 31 H 0.063 0.937 32 H 0.050 0.950 33 H 0.028 0.972 34 H 0.060 0.940 35 H 0.155 0.845 36 H 0.183 0.817 37 H 0.188 0.812 38 H 0.196 0.804 39 H 0.172 0.828 40 H 0.178 0.822 41 H 0.202 0.798 42 H 0.190 0.810 43 H 0.175 0.825 44 H 0.136 0.864 45 H 0.125 0.875 46 H 0.193 0.807 47 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 24.310 30.243 -1.574 38.834 hybrid contribution -2.053 -1.562 0.708 2.675 sum 22.257 28.682 -0.866 36.315 Atomic orbital electron populations 1.90369 1.16846 1.88308 1.51911 1.23330 0.88913 0.87052 0.73426 1.46143 1.10409 1.05014 1.75266 1.22145 0.95941 0.85144 0.98827 1.21607 0.91780 0.91691 0.93110 1.94823 1.62597 1.71679 1.30780 1.32161 0.93342 0.82230 0.85515 1.21663 0.99824 0.96493 0.98298 1.21633 1.00062 0.96279 0.92694 1.21880 0.91784 0.99977 1.00561 1.21749 1.01527 0.93306 0.93471 1.21864 0.96318 1.00756 0.96736 1.32380 0.83944 0.94906 0.80820 1.22159 0.93949 0.98561 1.00574 1.21863 0.97370 0.99915 0.91147 1.21867 0.98409 0.93216 1.00596 1.21643 0.93888 1.00573 0.95260 1.21570 1.00988 0.99963 0.93122 1.22885 0.96505 0.91415 0.98301 1.94990 1.55147 1.40187 1.92187 0.85635 0.76362 0.80287 0.77499 1.15644 1.18698 1.21680 1.24328 0.84038 0.99052 1.00166 1.21478 1.01400 1.07205 0.95059 1.22076 0.93711 1.06040 1.02113 1.24927 1.01814 1.02911 0.82042 1.83935 1.27953 1.63022 1.33956 0.76186 0.93667 0.94957 0.97217 0.93965 0.84530 0.81728 0.81169 0.80368 0.82821 0.82173 0.79811 0.80985 0.82484 0.86362 0.87517 0.80696 0.72798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.59 -44.33 16.50 16.01 0.26 -44.06 16 2 C 0.48 32.06 6.00 87.66 0.53 32.59 16 3 N -0.71 -39.33 5.03 -463.07 -2.33 -41.66 16 4 C 0.10 5.10 6.06 86.38 0.52 5.63 16 5 C 0.10 4.11 5.04 71.98 0.36 4.47 16 6 O -0.65 -28.10 13.31 -148.98 -1.98 -30.08 16 7 C 0.07 1.52 7.20 22.82 0.16 1.68 16 8 C -0.15 -2.77 8.40 22.48 0.19 -2.58 16 9 C -0.09 -1.02 10.03 22.24 0.22 -0.80 16 10 C -0.12 -0.90 10.04 22.33 0.22 -0.67 16 11 C -0.08 -0.62 10.03 22.24 0.22 -0.40 16 12 C -0.14 -1.90 8.42 22.48 0.19 -1.71 16 13 C 0.08 1.94 9.45 22.82 0.22 2.16 16 14 C -0.13 -1.86 9.15 22.48 0.21 -1.66 16 15 C -0.09 -0.72 10.04 22.24 0.22 -0.49 16 16 C -0.12 -1.22 10.04 22.34 0.22 -1.00 16 17 C -0.10 -1.62 10.04 22.24 0.22 -1.40 16 18 C -0.14 -3.59 9.76 22.48 0.22 -3.38 16 19 C 0.01 0.62 0.78 29.10 0.02 0.65 16 20 O -0.88 -71.83 16.74 -129.94 -2.17 -74.01 16 21 Si 0.98 55.31 25.62 68.60 1.76 57.07 16 22 H -0.23 -11.04 7.10 99.48 0.71 -10.34 16 23 H -0.26 -14.22 7.11 99.48 0.71 -13.52 16 24 H -0.29 -17.02 7.11 99.48 0.71 -16.31 16 25 C -0.03 -1.48 5.24 24.83 0.13 -1.35 16 26 C -0.23 -13.04 10.30 22.19 0.23 -12.81 16 27 C -0.22 -9.05 10.91 22.19 0.24 -8.80 16 28 C -0.05 -1.85 12.09 66.97 0.81 -1.04 16 29 O -0.19 -9.03 9.59 -2.39 -0.02 -9.05 16 30 H 0.40 20.76 7.60 -92.71 -0.70 20.06 16 31 H 0.05 2.21 8.14 -2.38 -0.02 2.19 16 32 H 0.03 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.01 0.40 7.75 -2.39 -0.02 0.38 16 34 H 0.04 1.50 5.36 -2.38 -0.01 1.48 16 35 H 0.14 2.99 6.45 -2.91 -0.02 2.97 16 36 H 0.17 1.08 8.06 -2.91 -0.02 1.05 16 37 H 0.17 0.14 8.06 -2.91 -0.02 0.11 16 38 H 0.18 0.10 8.06 -2.91 -0.02 0.08 16 39 H 0.15 1.72 7.91 -2.91 -0.02 1.70 16 40 H 0.16 1.48 6.42 -2.91 -0.02 1.46 16 41 H 0.18 0.03 8.06 -2.91 -0.02 0.01 16 42 H 0.17 0.51 8.06 -2.91 -0.02 0.49 16 43 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 44 H 0.12 3.98 7.80 -2.91 -0.02 3.95 16 45 H 0.11 6.61 8.03 -2.91 -0.02 6.59 16 46 H 0.18 5.56 8.06 -2.91 -0.02 5.53 16 47 H 0.26 5.52 8.06 -2.91 -0.02 5.50 16 Total: -1.00 -117.52 415.19 1.94 -115.59 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 1.05 Total: 17.12 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: 5.37 Total: 9.08 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: -2.33 Total: -41.66 kcal Atomic # 8 Polarization: -153.29 SS G_CDS: -3.92 Total: -157.20 kcal Atomic # 14 Polarization: 55.31 SS G_CDS: 1.76 Total: 57.07 kcal Total: -117.52 1.94 -115.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142287335.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 230.675 kcal (2) G-P(sol) polarization free energy of solvation -117.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -115.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds