Wall clock time and date at job start Wed Mar 25 2020 18:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.18328 * 2 1 4 4 C 1.52596 * 109.32687 * 119.55895 * 2 1 3 5 5 C 1.50448 * 111.18285 * 176.13340 * 4 2 1 6 6 C 1.38137 * 120.26248 * 157.00934 * 5 4 2 7 7 C 1.38217 * 120.15166 * 180.02562 * 6 5 4 8 8 C 1.39004 * 120.48607 * 359.40037 * 7 6 5 9 9 N 1.39952 * 120.08691 * 180.31920 * 8 7 6 10 10 C 1.34785 * 119.99609 * 145.21676 * 9 8 7 11 11 O 1.21284 * 119.99952 * 4.65832 * 10 9 8 12 12 C 1.50695 * 119.99890 * 184.65358 * 10 9 8 13 13 O 1.42900 * 109.47145 * 180.02562 * 12 10 9 14 14 Si 1.86303 * 109.47444 * 300.00441 * 12 10 9 15 15 H 1.48503 * 109.46996 * 59.99655 * 14 12 10 16 16 H 1.48498 * 109.47301 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47146 * 300.00042 * 14 12 10 18 18 C 1.50700 * 109.46970 * 60.00323 * 12 10 9 19 19 C 1.38247 * 119.97834 * 274.72585 * 18 12 10 20 20 C 1.38203 * 120.02734 * 179.72837 * 19 18 12 21 21 C 1.38456 * 119.96974 * 0.56532 * 20 19 18 22 22 F 1.35098 * 120.01977 * 179.68178 * 21 20 19 23 23 C 1.38450 * 119.95267 * 359.70827 * 21 20 19 24 24 C 1.38193 * 119.97706 * 359.97438 * 23 21 20 25 25 C 1.38818 * 119.81783 * 0.60956 * 8 7 6 26 26 C 1.38761 * 119.44363 * 359.77377 * 25 8 7 27 Xx 1.57620 * 121.00538 * 179.71944 * 26 25 8 28 27 O 1.41996 * 122.03229 * 351.49330 * 27 26 25 29 28 O 1.43321 * 109.32956 * 240.43596 * 2 1 3 30 29 H 1.08998 * 109.47198 * 300.44087 * 1 2 3 31 30 H 1.08999 * 109.46826 * 60.44176 * 1 2 3 32 31 H 1.09001 * 109.47289 * 180.44063 * 1 2 3 33 32 H 1.08998 * 109.47152 * 179.56181 * 3 2 1 34 33 H 1.09002 * 109.47108 * 299.55831 * 3 2 1 35 34 H 1.08993 * 109.47363 * 59.55687 * 3 2 1 36 35 H 1.09002 * 109.13299 * 55.69422 * 4 2 1 37 36 H 1.08999 * 109.08960 * 296.53876 * 4 2 1 38 37 H 1.07996 * 119.92334 * 359.74077 * 6 5 4 39 38 H 1.08006 * 119.75272 * 179.64252 * 7 6 5 40 39 H 0.96999 * 120.00805 * 325.22479 * 9 8 7 41 40 H 1.08006 * 119.98095 * 359.97438 * 19 18 12 42 41 H 1.07998 * 120.00943 * 180.25547 * 20 19 18 43 42 H 1.08007 * 120.01660 * 180.02562 * 23 21 20 44 43 H 1.08002 * 119.99081 * 180.02562 * 24 23 21 45 44 H 1.08000 * 120.27405 * 179.79250 * 25 8 7 46 45 H 0.96692 * 114.00137 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0327 1.4450 0.0000 4 6 2.0350 -0.7104 1.2526 5 6 3.5357 -0.8172 1.2492 6 6 4.2250 -0.9752 2.4358 7 6 5.6037 -1.0726 2.4301 8 6 6.3091 -1.0253 1.2333 9 7 7.7046 -1.1314 1.2366 10 6 8.3347 -1.7644 0.2272 11 8 7.7011 -2.1677 -0.7251 12 6 9.8264 -1.9709 0.2818 13 8 10.2553 -2.6596 -0.8945 14 14 10.6792 -0.3173 0.3783 15 1 10.2335 0.3989 1.6005 16 1 12.1492 -0.5209 0.4328 17 1 10.3346 0.4881 -0.8207 18 6 10.1761 -2.7882 1.4987 19 6 10.3561 -2.1662 2.7202 20 6 10.6713 -2.9154 3.8379 21 6 10.8184 -4.2880 3.7316 22 9 11.1328 -5.0206 4.8223 23 6 10.6434 -4.9092 2.5067 24 6 10.3218 -4.1588 1.3917 25 6 5.6260 -0.8665 0.0353 26 6 4.2424 -0.7614 0.0477 27 8 4.0722 -0.3271 -2.5325 28 8 2.0043 -0.6673 -1.1763 29 1 -0.3633 0.5207 0.8860 30 1 -0.3633 0.5070 -0.8939 31 1 -0.3634 -1.0276 0.0079 32 1 3.1226 1.4505 0.0079 33 1 1.6733 1.9547 -0.8939 34 1 1.6603 1.9593 0.8859 35 1 1.6055 -1.7114 1.2933 36 1 1.7187 -0.1499 2.1323 37 1 3.6857 -1.0181 3.3705 38 1 6.1366 -1.1902 3.3622 39 1 8.2183 -0.7496 1.9654 40 1 10.2464 -1.0949 2.8017 41 1 10.8078 -2.4297 4.7928 42 1 10.7575 -5.9799 2.4227 43 1 10.1849 -4.6432 0.4361 44 1 6.1669 -0.8255 -0.8986 45 1 3.4633 -0.2310 -3.2775 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001454453655.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Mar 25 2020 18:20:46 Heat of formation + Delta-G solvation = -1.361707 kcal Electronic energy + Delta-G solvation = -32072.447234 eV Core-core repulsion = 27442.354713 eV Total energy + Delta-G solvation = -4630.092521 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 361.133 amu Computer time = 6.42 seconds Orbital eigenvalues (eV) -49.76769 -41.93328 -40.45332 -39.56991 -38.25430 -35.93362 -34.33150 -32.77734 -32.42520 -32.06069 -32.03698 -31.40019 -30.48398 -28.34253 -27.88225 -26.00871 -24.18168 -23.79407 -23.31510 -22.31778 -21.08876 -20.30341 -18.66678 -18.53774 -17.97667 -17.37284 -17.07783 -16.91629 -16.48861 -16.32939 -16.25757 -15.73023 -15.57529 -15.38717 -15.33510 -15.02335 -14.96480 -14.67820 -14.53662 -14.35574 -14.31603 -14.14594 -13.55845 -13.40407 -13.32234 -13.09740 -12.90561 -12.80487 -12.67069 -12.59469 -12.44421 -12.38883 -12.22702 -12.02905 -11.61247 -11.45596 -11.09521 -10.81810 -10.67030 -10.56755 -9.95871 -9.75139 -9.48598 -9.39662 -8.53700 -7.92228 -6.56138 -2.72024 -0.48195 -0.29973 0.24363 0.39562 1.13528 1.20106 1.42158 1.70749 1.93928 2.17970 2.44366 2.80184 2.98594 3.21838 3.37538 3.44293 3.64520 3.75076 3.88655 3.91535 4.00685 4.04910 4.07471 4.22652 4.26693 4.38854 4.47609 4.53460 4.58816 4.61309 4.63614 4.66403 4.71741 4.80872 4.85885 4.91854 4.97886 5.08264 5.10985 5.17572 5.20199 5.23769 5.26501 5.43434 5.46369 5.66502 5.86148 6.08258 6.31158 6.75228 7.13662 7.68616 Molecular weight = 361.13amu Principal moments of inertia in cm(-1) A = 0.013694 B = 0.002837 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.135964 B = 9866.833524 C =10862.696498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.062 3.938 3 C -0.153 4.153 4 C -0.090 4.090 5 C -0.093 4.093 6 C -0.017 4.017 7 C -0.106 4.106 8 C 0.186 3.814 9 N -0.661 5.661 10 C 0.482 3.518 11 O -0.564 6.564 12 C -0.027 4.027 13 O -0.894 6.894 14 Si 0.952 3.048 15 H -0.176 1.176 16 H -0.268 1.268 17 H -0.316 1.316 18 C -0.096 4.096 19 C -0.118 4.118 20 C -0.124 4.124 21 C 0.073 3.927 22 F -0.143 7.143 23 C -0.156 4.156 24 C -0.089 4.089 25 C -0.170 4.170 26 C 0.268 3.732 27 O -0.823 6.823 28 O -0.439 6.439 29 H 0.124 0.876 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.033 0.967 33 H 0.041 0.959 34 H 0.115 0.885 35 H 0.108 0.892 36 H 0.161 0.839 37 H 0.248 0.752 38 H 0.217 0.783 39 H 0.433 0.567 40 H 0.167 0.833 41 H 0.181 0.819 42 H 0.139 0.861 43 H 0.090 0.910 44 H 0.124 0.876 45 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.364 7.727 27.638 31.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.014 3.986 3 C -0.210 4.210 4 C -0.126 4.126 5 C -0.094 4.094 6 C -0.034 4.034 7 C -0.126 4.126 8 C 0.089 3.911 9 N -0.314 5.314 10 C 0.274 3.726 11 O -0.440 6.440 12 C -0.126 4.126 13 O -0.839 6.839 14 Si 0.774 3.226 15 H -0.100 1.100 16 H -0.192 1.192 17 H -0.245 1.245 18 C -0.097 4.097 19 C -0.136 4.136 20 C -0.142 4.142 21 C 0.054 3.946 22 F -0.121 7.121 23 C -0.174 4.174 24 C -0.107 4.107 25 C -0.190 4.190 26 C 0.259 3.741 27 O -0.648 6.648 28 O -0.384 6.384 29 H 0.142 0.858 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.133 0.867 35 H 0.126 0.874 36 H 0.179 0.821 37 H 0.264 0.736 38 H 0.234 0.766 39 H 0.276 0.724 40 H 0.184 0.816 41 H 0.199 0.801 42 H 0.157 0.843 43 H 0.108 0.892 44 H 0.141 0.859 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.596 7.786 27.171 30.944 hybrid contribution 0.045 -0.786 -3.723 3.806 sum -12.551 7.000 23.448 27.501 Atomic orbital electron populations 1.22334 0.86012 1.03922 1.04552 1.22344 0.94326 0.93161 0.88778 1.22535 0.99966 0.94894 1.03586 1.21575 0.86049 1.04682 1.00299 1.21048 1.00507 1.02939 0.84921 1.21780 0.92235 0.94952 0.94427 1.22093 0.94976 0.98407 0.97086 1.17968 0.84939 0.98133 0.90083 1.44170 1.03595 1.56684 1.26916 1.24493 0.93566 0.74014 0.80497 1.90543 1.68042 1.50231 1.35163 1.23635 0.87743 1.06777 0.94450 1.95045 1.81894 1.72829 1.34157 0.86334 0.81317 0.75073 0.79885 1.09966 1.19240 1.24489 1.21134 0.97779 0.95148 0.95621 1.21300 1.00363 1.01697 0.90222 1.21348 1.01055 0.90864 1.00957 1.17692 1.03823 0.90539 0.82507 1.91461 1.90761 1.77600 1.52323 1.21206 1.03489 1.01156 0.91581 1.20771 0.97941 0.94773 0.97254 1.21428 0.91625 1.04990 1.01003 1.29369 0.82974 1.08306 0.53474 1.93609 1.39078 1.98530 1.33623 1.95173 1.27898 1.75091 1.40240 0.85813 0.92814 0.91138 0.94820 0.93968 0.86693 0.87403 0.82147 0.73617 0.76643 0.72438 0.81627 0.80138 0.84309 0.89194 0.85877 0.86329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 98. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.64 8.81 71.98 0.63 -1.01 16 2 C 0.06 1.44 1.09 -10.93 -0.01 1.43 16 3 C -0.15 -3.39 8.56 71.98 0.62 -2.77 16 4 C -0.09 -1.16 4.67 29.63 0.14 -1.02 16 5 C -0.09 -1.75 5.24 -19.66 -0.10 -1.85 16 6 C -0.02 -0.13 9.72 22.24 0.22 0.09 16 7 C -0.11 -1.33 9.95 22.45 0.22 -1.11 16 8 C 0.19 5.44 6.30 38.17 0.24 5.69 16 9 N -0.66 -22.20 4.89 -303.42 -1.49 -23.68 16 10 C 0.48 24.51 5.85 87.65 0.51 25.02 16 11 O -0.56 -35.95 13.94 15.99 0.22 -35.73 16 12 C -0.03 -1.41 0.72 29.10 0.02 -1.39 16 13 O -0.89 -64.55 16.04 -129.94 -2.08 -66.63 16 14 Si 0.95 40.61 24.12 68.60 1.65 42.26 16 15 H -0.18 -4.36 6.30 99.48 0.63 -3.73 16 16 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 17 H -0.32 -15.92 7.11 99.48 0.71 -15.21 16 18 C -0.10 -4.08 4.46 -19.86 -0.09 -4.17 16 19 C -0.12 -3.36 7.84 22.26 0.17 -3.18 16 20 C -0.12 -2.89 10.03 22.31 0.22 -2.66 16 21 C 0.07 2.09 7.30 22.37 0.16 2.25 16 22 F -0.14 -3.76 17.27 44.97 0.78 -2.98 16 23 C -0.16 -5.38 10.03 22.31 0.22 -5.16 16 24 C -0.09 -3.99 9.35 22.26 0.21 -3.79 16 25 C -0.17 -6.96 8.51 22.53 0.19 -6.77 16 26 C 0.27 9.68 8.12 22.70 0.18 9.86 16 27 O -0.82 -50.62 17.85 -127.95 -2.28 -52.90 16 28 O -0.44 -17.96 13.61 -127.95 -1.74 -19.70 16 29 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.03 0.94 6.39 -2.39 -0.02 0.92 16 33 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.16 0.06 8.12 -2.39 -0.02 0.04 16 37 H 0.25 -1.68 8.06 -2.91 -0.02 -1.70 16 38 H 0.22 0.38 8.06 -2.91 -0.02 0.36 16 39 H 0.43 9.88 6.58 -92.71 -0.61 9.27 16 40 H 0.17 3.31 5.13 -2.91 -0.01 3.29 16 41 H 0.18 2.42 8.06 -2.91 -0.02 2.40 16 42 H 0.14 4.24 8.06 -2.91 -0.02 4.22 16 43 H 0.09 4.89 7.35 -2.91 -0.02 4.87 16 44 H 0.12 6.88 6.19 -2.91 -0.02 6.86 16 45 H 0.31 17.52 9.26 -74.06 -0.69 16.83 16 Total: -1.00 -125.66 384.89 -0.73 -126.38 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: 0.44 Total: 23.51 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: 3.77 Total: 9.47 kcal Atomic # 7 Polarization: -22.20 SS G_CDS: -1.49 Total: -23.68 kcal Atomic # 8 Polarization: -169.08 SS G_CDS: -5.89 Total: -174.96 kcal Atomic # 9 Polarization: -3.76 SS G_CDS: 0.78 Total: -2.98 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 1.65 Total: 42.26 kcal Total: -125.66 -0.73 -126.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001454453655.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.023 kcal (2) G-P(sol) polarization free energy of solvation -125.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -126.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.42 seconds