Wall clock time and date at job start Thu Mar 26 2020 01:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38273 * 119.97897 * 2 1 4 4 C 1.38170 * 120.02846 * 179.97438 * 3 2 1 5 5 C 1.38484 * 119.97207 * 0.02562 * 4 3 2 6 6 F 1.35109 * 120.01930 * 179.97438 * 5 4 3 7 7 C 1.38438 * 119.95090 * 359.70678 * 5 4 3 8 8 C 1.38217 * 119.97318 * 0.54546 * 7 5 4 9 9 C 1.50692 * 119.98726 * 179.75204 * 8 7 5 10 10 O 1.42904 * 109.47305 * 129.25782 * 9 8 7 11 11 Si 1.86298 * 109.47226 * 9.25770 * 9 8 7 12 12 H 1.48506 * 109.47374 * 173.83986 * 11 9 8 13 13 H 1.48498 * 109.47310 * 293.84271 * 11 9 8 14 14 H 1.48505 * 109.47058 * 53.84392 * 11 9 8 15 15 C 1.50700 * 109.47046 * 249.26018 * 9 8 7 16 16 O 1.21288 * 119.99749 * 239.99917 * 15 9 8 17 17 N 1.34777 * 119.99910 * 60.00019 * 15 9 8 18 18 C 1.39960 * 119.99738 * 185.14075 * 17 15 9 19 19 C 1.38996 * 120.08728 * 213.65322 * 18 17 15 20 20 C 1.38209 * 120.49114 * 180.08128 * 19 18 17 21 21 C 1.38142 * 120.14868 * 359.92728 * 20 19 18 22 22 C 1.39492 * 119.44416 * 359.92131 * 21 20 19 23 23 C 1.38762 * 120.65811 * 359.94169 * 22 21 20 24 Xx 1.57620 * 118.34012 * 180.28944 * 22 21 20 25 24 O 1.42006 * 122.03279 * 171.34714 * 24 22 21 26 25 O 1.43355 * 115.93686 * 351.36840 * 24 22 21 27 26 C 1.43313 * 111.34531 * 41.23738 * 26 24 22 28 27 C 1.50455 * 120.25952 * 179.74911 * 21 20 19 29 28 H 1.09000 * 109.46931 * 264.16047 * 1 2 3 30 29 H 1.09003 * 109.47119 * 24.15853 * 1 2 3 31 30 H 1.09000 * 109.47689 * 144.16178 * 1 2 3 32 31 H 1.07998 * 119.98164 * 0.02562 * 3 2 1 33 32 H 1.08000 * 120.01610 * 180.02562 * 4 3 2 34 33 H 1.07999 * 120.01029 * 180.29971 * 7 5 4 35 34 H 0.96997 * 120.00020 * 5.13636 * 17 15 9 36 35 H 1.08010 * 119.75864 * 0.06211 * 19 18 17 37 36 H 1.07999 * 119.92828 * 179.89472 * 20 19 18 38 37 H 1.08004 * 120.28679 * 180.02562 * 23 22 21 39 38 H 0.96690 * 114.00051 * 180.02562 * 25 24 22 40 39 H 1.08999 * 109.32931 * 174.08773 * 27 26 24 41 40 H 1.09000 * 109.32694 * 54.61492 * 27 26 24 42 41 H 1.09004 * 109.13697 * 277.43972 * 28 21 20 43 42 H 1.08992 * 109.13751 * 36.62538 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1979 1.1977 0.0000 4 6 3.5796 1.1989 0.0005 5 6 4.2724 -0.0001 0.0005 6 9 5.6235 -0.0001 0.0005 7 6 3.5797 -1.1987 0.0061 8 6 2.1975 -1.1974 0.0003 9 6 1.4432 -2.5019 0.0008 10 8 0.4622 -2.4846 1.0398 11 14 2.6317 -3.9066 0.2922 12 1 1.8729 -5.1744 0.4413 13 1 3.5594 -4.0177 -0.8620 14 1 3.4104 -3.6474 1.5299 15 6 0.7617 -2.6886 -1.3303 16 8 -0.4452 -2.7962 -1.3839 17 7 1.4934 -2.7360 -2.4612 18 6 0.8555 -2.8010 -3.7052 19 6 1.4348 -3.5129 -4.7491 20 6 0.8129 -3.5812 -5.9814 21 6 -0.3943 -2.9415 -6.1858 22 6 -0.9789 -2.2293 -5.1385 23 6 -0.3604 -2.1596 -3.8983 24 8 -3.1113 -0.9239 -4.3485 25 8 -2.8113 -1.4994 -6.7588 26 6 -2.5703 -2.7567 -7.4031 27 6 -1.0707 -3.0096 -7.5280 28 1 -0.3633 -0.1046 1.0223 29 1 -0.3633 0.9377 -0.4206 30 1 -0.3634 -0.8331 -0.6017 31 1 1.6572 2.1326 0.0004 32 1 4.1190 2.1345 0.0010 33 1 4.1191 -2.1343 0.0110 34 1 2.4621 -2.7249 -2.4129 35 1 2.3782 -4.0161 -4.5961 36 1 1.2720 -4.1355 -6.7867 37 1 -0.8186 -1.6068 -3.0915 38 1 -3.9400 -0.5186 -4.6380 39 1 -3.0181 -2.7446 -8.3968 40 1 -3.0232 -3.5556 -6.8159 41 1 -0.6352 -2.2577 -8.1862 42 1 -0.9105 -3.9977 -7.9592 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001586561634.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 01:43:35 Heat of formation + Delta-G solvation = 3.034828 kcal Electronic energy + Delta-G solvation = -30551.457281 eV Core-core repulsion = 26077.093028 eV Total energy + Delta-G solvation = -4474.364254 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 347.117 amu Computer time = 4.67 seconds Orbital eigenvalues (eV) -49.81930 -41.95345 -40.55325 -39.58590 -37.07555 -35.58226 -34.52895 -33.20148 -32.68381 -32.29659 -32.00768 -31.15583 -29.23353 -27.67017 -26.38945 -24.32001 -24.18506 -23.33710 -22.55076 -21.75792 -20.89016 -18.83502 -18.29840 -17.71593 -17.38261 -17.01785 -16.77028 -16.62182 -16.50701 -16.10212 -15.93886 -15.57534 -15.17961 -15.17378 -15.05542 -14.76236 -14.63192 -14.53787 -14.42928 -14.22539 -14.08037 -13.80298 -13.53869 -13.06481 -12.93078 -12.79945 -12.69625 -12.54283 -12.26319 -12.11637 -11.88599 -11.73322 -11.53767 -11.06130 -10.88762 -10.69811 -10.57156 -9.88585 -9.69483 -9.45259 -9.29991 -8.43883 -7.84896 -6.50235 -2.73289 -0.48832 -0.30561 0.22661 0.32157 1.16260 1.25274 1.39400 1.67603 1.99972 2.16392 2.46273 2.67069 2.98053 3.23309 3.30459 3.43830 3.64861 3.78663 3.81639 3.97280 4.07314 4.07925 4.19046 4.27887 4.38229 4.43064 4.44583 4.53687 4.55383 4.68600 4.75094 4.82790 4.85838 4.94312 4.96863 5.00455 5.06643 5.13513 5.14610 5.32173 5.34515 5.42246 5.49582 5.85973 6.04384 6.29728 6.86843 7.14729 7.70004 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.012757 B = 0.003610 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.322833 B = 7754.469761 C = 7950.911544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.092 4.092 3 C -0.093 4.093 4 C -0.151 4.151 5 C 0.094 3.906 6 F -0.138 7.138 7 C -0.179 4.179 8 C -0.059 4.059 9 C -0.023 4.023 10 O -0.873 6.873 11 Si 0.952 3.048 12 H -0.305 1.305 13 H -0.196 1.196 14 H -0.267 1.267 15 C 0.485 3.515 16 O -0.551 6.551 17 N -0.667 5.667 18 C 0.188 3.812 19 C -0.113 4.113 20 C -0.014 4.014 21 C -0.093 4.093 22 C 0.266 3.734 23 C -0.163 4.163 24 O -0.854 6.854 25 O -0.439 6.439 26 C 0.016 3.984 27 C -0.100 4.100 28 H 0.046 0.954 29 H 0.057 0.943 30 H 0.049 0.951 31 H 0.150 0.850 32 H 0.168 0.832 33 H 0.143 0.857 34 H 0.431 0.569 35 H 0.213 0.787 36 H 0.248 0.752 37 H 0.122 0.878 38 H 0.302 0.698 39 H 0.180 0.820 40 H 0.079 0.921 41 H 0.118 0.882 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.662 -4.836 -20.532 26.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.093 4.093 3 C -0.111 4.111 4 C -0.170 4.170 5 C 0.075 3.925 6 F -0.116 7.116 7 C -0.197 4.197 8 C -0.060 4.060 9 C -0.123 4.123 10 O -0.818 6.818 11 Si 0.775 3.225 12 H -0.233 1.233 13 H -0.120 1.120 14 H -0.192 1.192 15 C 0.278 3.722 16 O -0.427 6.427 17 N -0.320 5.320 18 C 0.091 3.909 19 C -0.132 4.132 20 C -0.031 4.031 21 C -0.095 4.095 22 C 0.256 3.744 23 C -0.183 4.183 24 O -0.679 6.679 25 O -0.383 6.383 26 C -0.066 4.066 27 C -0.136 4.136 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.168 0.832 32 H 0.185 0.815 33 H 0.160 0.840 34 H 0.273 0.727 35 H 0.230 0.770 36 H 0.264 0.736 37 H 0.140 0.860 38 H 0.132 0.868 39 H 0.195 0.805 40 H 0.096 0.904 41 H 0.136 0.864 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 15.859 -5.606 -19.703 25.906 hybrid contribution -2.522 1.413 1.223 3.139 sum 13.337 -4.193 -18.480 23.172 Atomic orbital electron populations 1.20592 0.92801 1.00417 1.01408 1.19958 0.95949 0.93554 0.99811 1.21151 0.93913 0.97367 0.98665 1.21245 0.93994 0.97714 1.04021 1.17521 0.76630 0.94381 1.04017 1.91470 1.28553 1.97447 1.94152 1.21011 0.93387 0.98268 1.07055 1.20848 0.92838 0.97308 0.95007 1.23585 1.00738 0.98336 0.89609 1.95075 1.50900 1.92582 1.43279 0.86234 0.76118 0.77467 0.82683 1.23303 1.12017 1.19231 1.24381 0.88505 0.72176 0.87184 1.90550 1.17304 1.47815 1.87035 1.44298 1.11588 1.73437 1.02642 1.17943 0.89711 0.94734 0.88505 1.22095 1.03868 0.96444 0.90801 1.21765 0.87221 0.95411 0.98710 1.21040 0.95525 0.96390 0.96533 1.29466 0.57960 0.92085 0.94881 1.21255 0.96282 1.03574 0.97213 1.93620 1.38931 1.82294 1.53059 1.95167 1.85464 1.28063 1.29634 1.23438 0.96226 0.89682 0.97234 1.21594 0.92960 1.08275 0.90770 0.93540 0.92435 0.93222 0.83184 0.81491 0.83958 0.72735 0.77038 0.73594 0.86030 0.86800 0.80499 0.90392 0.86409 0.82327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 64. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -5.00 8.48 71.23 0.60 -4.40 16 2 C -0.09 -4.21 5.76 -19.86 -0.11 -4.33 16 3 C -0.09 -3.24 9.67 22.26 0.22 -3.03 16 4 C -0.15 -4.47 10.03 22.31 0.22 -4.24 16 5 C 0.09 2.99 7.30 22.38 0.16 3.15 16 6 F -0.14 -3.93 17.27 44.97 0.78 -3.16 16 7 C -0.18 -6.55 8.64 22.31 0.19 -6.36 16 8 C -0.06 -2.69 4.66 -19.87 -0.09 -2.78 16 9 C -0.02 -1.20 0.41 29.10 0.01 -1.19 16 10 O -0.87 -60.87 15.17 -129.94 -1.97 -62.84 16 11 Si 0.95 40.29 22.99 68.60 1.58 41.86 16 12 H -0.31 -14.49 7.11 99.48 0.71 -13.78 16 13 H -0.20 -5.29 6.94 99.48 0.69 -4.60 16 14 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 15 C 0.49 24.27 4.45 87.66 0.39 24.66 16 16 O -0.55 -33.68 12.66 15.98 0.20 -33.47 16 17 N -0.67 -23.13 4.91 -303.42 -1.49 -24.62 16 18 C 0.19 5.56 6.28 38.16 0.24 5.80 16 19 C -0.11 -1.46 9.94 22.44 0.22 -1.23 16 20 C -0.01 -0.10 9.72 22.24 0.22 0.12 16 21 C -0.09 -1.63 5.79 -19.66 -0.11 -1.74 16 22 C 0.27 9.35 9.44 22.70 0.21 9.56 16 23 C -0.16 -6.57 8.47 22.53 0.19 -6.38 16 24 O -0.85 -53.22 17.84 -127.95 -2.28 -55.51 16 25 O -0.44 -17.17 14.34 -127.95 -1.83 -19.00 16 26 C 0.02 0.32 7.08 71.85 0.51 0.83 16 27 C -0.10 -0.99 5.95 29.64 0.18 -0.82 16 28 H 0.05 2.64 7.85 -2.39 -0.02 2.62 16 29 H 0.06 2.59 8.05 -2.39 -0.02 2.57 16 30 H 0.05 2.99 4.31 -2.39 -0.01 2.98 16 31 H 0.15 4.35 8.06 -2.91 -0.02 4.33 16 32 H 0.17 3.58 8.06 -2.91 -0.02 3.56 16 33 H 0.14 4.57 4.97 -2.91 -0.01 4.56 16 34 H 0.43 11.11 7.76 -92.71 -0.72 10.39 16 35 H 0.21 0.60 8.06 -2.91 -0.02 0.58 16 36 H 0.25 -1.78 8.06 -2.91 -0.02 -1.80 16 37 H 0.12 6.67 6.39 -2.91 -0.02 6.66 16 38 H 0.30 17.45 9.26 -74.06 -0.69 16.76 16 39 H 0.18 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.16 -0.23 8.12 -2.39 -0.02 -0.25 16 Total: -1.00 -119.48 361.78 -1.33 -120.80 By element: Atomic # 1 Polarization: 27.87 SS G_CDS: 0.45 Total: 28.31 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: 3.25 Total: 7.62 kcal Atomic # 7 Polarization: -23.13 SS G_CDS: -1.49 Total: -24.62 kcal Atomic # 8 Polarization: -164.94 SS G_CDS: -5.89 Total: -170.82 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.78 Total: -3.16 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 1.58 Total: 41.86 kcal Total: -119.48 -1.33 -120.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001586561634.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.840 kcal (2) G-P(sol) polarization free energy of solvation -119.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -120.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.67 seconds