Wall clock time and date at job start Thu Mar 26 2020 01:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.21280 * 1 3 3 N 1.34779 * 120.00345 * 2 1 4 4 C 1.39960 * 119.99636 * 4.39349 * 3 2 1 5 5 C 1.38993 * 120.09280 * 144.96497 * 4 3 2 6 6 C 1.38214 * 120.49072 * 180.02562 * 5 4 3 7 7 C 1.38135 * 120.14787 * 359.91594 * 6 5 4 8 8 C 1.39495 * 119.44832 * 359.95274 * 7 6 5 9 9 C 1.38767 * 120.65488 * 359.91563 * 8 7 6 10 Xx 1.57622 * 118.34127 * 180.29278 * 8 7 6 11 10 O 1.42006 * 122.03113 * 171.33848 * 10 8 7 12 11 O 1.43349 * 115.93739 * 351.35744 * 10 8 7 13 12 C 1.43318 * 111.34672 * 41.24317 * 12 10 8 14 13 C 1.50456 * 120.25864 * 179.77510 * 7 6 5 15 14 C 1.50703 * 120.00252 * 179.97438 * 2 1 3 16 15 O 1.42898 * 109.46667 * 0.02562 * 15 2 1 17 16 Si 1.86302 * 109.46936 * 120.00003 * 15 2 1 18 17 H 1.48495 * 109.47408 * 60.00536 * 17 15 2 19 18 H 1.48500 * 109.47058 * 180.02562 * 17 15 2 20 19 H 1.48505 * 109.47194 * 300.00084 * 17 15 2 21 20 C 1.50693 * 109.47321 * 240.00071 * 15 2 1 22 21 C 1.33355 * 125.18707 * 94.72316 * 21 15 2 23 22 C 1.38472 * 114.92634 * 179.79418 * 22 21 15 24 23 C 1.33497 * 114.88439 * 0.49471 * 23 22 21 25 24 Cl 1.73604 * 125.20690 * 179.71658 * 24 23 22 26 25 S 1.75876 * 125.19215 * 275.01962 * 21 15 2 27 26 H 0.97000 * 120.00473 * 184.65430 * 3 2 1 28 27 H 1.08002 * 119.75467 * 0.07615 * 5 4 3 29 28 H 1.08000 * 119.92631 * 179.90135 * 6 5 4 30 29 H 1.08005 * 120.28003 * 180.10074 * 9 8 7 31 30 H 0.96697 * 113.99798 * 180.02562 * 11 10 8 32 31 H 1.08996 * 109.33273 * 174.08909 * 13 12 10 33 32 H 1.09005 * 109.32435 * 54.61195 * 13 12 10 34 33 H 1.08998 * 109.13133 * 277.43985 * 14 7 6 35 34 H 1.08999 * 109.13959 * 36.62428 * 14 7 6 36 35 H 1.08001 * 122.53167 * 359.97438 * 22 21 15 37 36 H 1.08008 * 122.55563 * 180.23030 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.2128 0.0000 0.0000 3 7 1.8868 1.1672 0.0000 4 6 1.1901 2.3775 0.0929 5 6 1.7404 3.4468 0.7897 6 6 1.0593 4.6455 0.8871 7 6 -0.1772 4.7914 0.2890 8 6 -0.7301 3.7203 -0.4132 9 6 -0.0496 2.5153 -0.5165 10 8 -2.6936 2.9509 -1.9714 11 8 -2.8270 5.1325 -0.7658 12 6 -1.9291 6.2493 -0.7391 13 6 -0.9231 6.0935 0.3976 14 6 1.9664 -1.3051 0.0006 15 8 1.0377 -2.3912 0.0005 16 14 3.0374 -1.4044 -1.5205 17 1 4.0025 -0.2757 -1.5210 18 1 3.7795 -2.6906 -1.5203 19 1 2.1837 -1.3262 -2.7331 20 6 2.8327 -1.3844 1.2310 21 6 2.4893 -1.9757 2.3759 22 6 3.4521 -1.9266 3.3699 23 6 4.5739 -1.2856 3.0341 24 17 5.9466 -1.0595 4.0726 25 16 4.4482 -0.7048 1.3787 26 1 2.8544 1.1686 -0.0682 27 1 2.7078 3.3404 1.2580 28 1 1.4948 5.4699 1.4321 29 1 -0.4826 1.6905 -1.0630 30 1 -3.5628 3.1900 -2.3212 31 1 -2.4989 7.1670 -0.5934 32 1 -1.3954 6.3058 -1.6879 33 1 -1.4525 6.1236 1.3499 34 1 -0.2108 6.9177 0.3587 35 1 1.5336 -2.4590 2.5161 36 1 3.3049 -2.3693 4.3440 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001586561651.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 01:45:50 Heat of formation + Delta-G solvation = 87.509428 kcal Electronic energy + Delta-G solvation = -26011.023042 eV Core-core repulsion = 21894.665931 eV Total energy + Delta-G solvation = -4116.357111 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 355.029 amu Computer time = 6.28 seconds Orbital eigenvalues (eV) -40.44521 -38.65864 -37.57051 -36.40206 -35.53461 -33.95895 -32.72468 -31.25448 -31.01391 -30.63948 -28.49847 -27.72414 -25.32790 -23.43484 -22.81530 -22.33142 -20.57748 -20.19857 -18.70601 -17.72639 -16.99278 -16.35378 -15.80048 -15.48796 -15.14270 -14.91892 -14.77146 -14.21258 -13.86264 -13.72338 -13.64113 -13.33776 -13.27122 -13.07707 -12.89891 -12.78431 -12.52863 -12.30286 -12.06628 -11.75401 -11.65552 -11.32319 -11.15704 -10.87514 -10.74730 -10.52200 -10.24052 -10.19678 -9.57486 -9.51952 -9.24994 -8.95146 -8.29462 -8.22076 -8.10718 -8.03567 -7.12053 -6.06955 -5.04850 -1.29675 0.87401 1.00096 1.14506 1.32261 2.10710 2.44932 2.63793 2.72731 2.87564 3.02312 3.19524 3.33908 3.47768 3.77470 4.42412 4.46459 4.78748 4.85938 4.98550 5.23724 5.32167 5.49675 5.54371 5.55929 5.70336 5.71606 5.78497 5.82760 5.96837 6.05832 6.09846 6.15585 6.34383 6.36874 6.78009 6.80071 6.89587 6.98546 7.56054 8.17586 8.44632 8.91506 Molecular weight = 355.03amu Principal moments of inertia in cm(-1) A = 0.013277 B = 0.003346 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.333606 B = 8365.653842 C = 9619.940374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.483 6.483 2 C 0.492 3.508 3 N -0.679 5.679 4 C 0.197 3.803 5 C -0.149 4.149 6 C -0.064 4.064 7 C -0.114 4.114 8 C 0.261 3.739 9 C -0.126 4.126 10 O -0.633 6.633 11 O -0.484 6.484 12 C 0.055 3.945 13 C -0.097 4.097 14 C 0.044 3.956 15 O -0.713 6.713 16 Si 0.910 3.090 17 H -0.264 1.264 18 H -0.246 1.246 19 H -0.246 1.246 20 C -0.138 4.138 21 C -0.118 4.118 22 C -0.104 4.104 23 C -0.160 4.160 24 Cl -0.034 7.034 25 S 0.074 5.926 26 H 0.411 0.589 27 H 0.151 0.849 28 H 0.157 0.843 29 H 0.181 0.819 30 H 0.330 0.670 31 H 0.086 0.914 32 H 0.039 0.961 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.155 0.845 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.539 9.788 5.615 16.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C 0.281 3.719 3 N -0.331 5.331 4 C 0.100 3.900 5 C -0.170 4.170 6 C -0.082 4.082 7 C -0.116 4.116 8 C 0.245 3.755 9 C -0.146 4.146 10 O -0.461 6.461 11 O -0.423 6.423 12 C -0.029 4.029 13 C -0.134 4.134 14 C -0.061 4.061 15 O -0.656 6.656 16 Si 0.730 3.270 17 H -0.192 1.192 18 H -0.169 1.169 19 H -0.170 1.170 20 C -0.256 4.256 21 C -0.146 4.146 22 C -0.137 4.137 23 C -0.302 4.302 24 Cl -0.005 7.005 25 S 0.333 5.667 26 H 0.249 0.751 27 H 0.168 0.832 28 H 0.175 0.825 29 H 0.197 0.803 30 H 0.163 0.837 31 H 0.102 0.898 32 H 0.057 0.943 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.172 0.828 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 13.466 9.792 4.329 17.203 hybrid contribution -1.507 -0.471 0.956 1.846 sum 11.958 9.321 5.285 16.057 Atomic orbital electron populations 1.90601 1.14076 1.85810 1.44838 1.23767 0.89887 0.84756 0.73521 1.44512 1.10865 1.03485 1.74239 1.17506 0.91022 0.87364 0.94145 1.21266 1.02624 0.92723 1.00359 1.20637 0.90232 0.98228 0.99151 1.20159 0.94782 0.97445 0.99164 1.29545 0.61137 0.92525 0.92278 1.21434 0.93323 0.98327 1.01490 1.93591 1.37050 1.43530 1.71960 1.95071 1.28871 1.22940 1.95390 1.22096 0.92308 0.93536 0.94920 1.21452 0.97433 0.92376 1.02155 1.22566 0.96390 0.91696 0.95416 1.95153 1.49864 1.35689 1.84845 0.86716 0.77277 0.81166 0.81867 1.19208 1.16908 1.16992 1.26235 0.95193 1.02118 1.02041 1.19987 1.01200 1.02176 0.91219 1.20300 0.91906 1.00075 1.01391 1.24995 0.94967 1.13162 0.97075 1.98320 1.41169 1.96181 1.64859 1.84095 1.16621 1.58840 1.07103 0.75146 0.83184 0.82532 0.80254 0.83683 0.89767 0.94296 0.89727 0.89879 0.82764 0.83883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 121. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.48 -12.87 13.96 -14.35 -0.20 -13.07 16 2 C 0.49 11.09 5.84 -10.98 -0.06 11.03 16 3 N -0.68 -11.74 4.90 -9.84 -0.05 -11.79 16 4 C 0.20 3.14 6.30 -83.65 -0.53 2.62 16 5 C -0.15 -1.70 9.95 -39.31 -0.39 -2.09 16 6 C -0.06 -0.65 9.72 -39.63 -0.39 -1.04 16 7 C -0.11 -1.56 5.79 -104.31 -0.60 -2.16 16 8 C 0.26 4.82 9.44 -38.92 -0.37 4.45 16 9 C -0.13 -2.40 8.51 -39.17 -0.33 -2.73 16 10 O -0.63 -15.84 17.84 -57.22 -1.02 -16.86 16 11 O -0.48 -10.53 14.34 -57.22 -0.82 -11.35 16 12 C 0.05 0.84 7.08 36.95 0.26 1.10 16 13 C -0.10 -1.15 5.95 -28.21 -0.17 -1.32 16 14 C 0.04 1.02 0.78 -29.04 -0.02 1.00 16 15 O -0.71 -21.12 16.56 -55.14 -0.91 -22.04 16 16 Si 0.91 18.24 24.68 -169.99 -4.19 14.04 16 17 H -0.26 -4.13 7.05 56.52 0.40 -3.73 16 18 H -0.25 -4.93 7.11 56.52 0.40 -4.53 16 19 H -0.25 -5.19 7.11 56.52 0.40 -4.79 16 20 C -0.14 -2.75 4.76 -36.02 -0.17 -2.92 16 21 C -0.12 -2.26 9.62 -41.20 -0.40 -2.66 16 22 C -0.10 -1.63 10.13 -41.15 -0.42 -2.04 16 23 C -0.16 -2.38 7.10 29.07 0.21 -2.18 16 24 Cl -0.03 -0.42 29.29 -51.86 -1.52 -1.94 16 25 S 0.07 1.15 20.69 -107.50 -2.22 -1.08 16 26 H 0.41 5.86 7.18 -40.82 -0.29 5.57 16 27 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 28 H 0.16 0.93 8.06 -52.49 -0.42 0.51 16 29 H 0.18 4.09 6.22 -52.48 -0.33 3.77 16 30 H 0.33 7.22 9.26 45.56 0.42 7.64 16 31 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.08 0.67 8.12 -51.93 -0.42 0.25 16 35 H 0.15 3.20 7.82 -52.49 -0.41 2.79 16 36 H 0.14 1.86 8.06 -52.48 -0.42 1.44 16 LS Contribution 351.67 15.07 5.30 5.30 Total: -1.00 -35.25 351.67 -11.39 -46.63 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -2.36 Total: 11.09 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: -3.38 Total: 1.05 kcal Atomic # 7 Polarization: -11.74 SS G_CDS: -0.05 Total: -11.79 kcal Atomic # 8 Polarization: -60.36 SS G_CDS: -2.95 Total: -63.31 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -4.19 Total: 14.04 kcal Atomic # 16 Polarization: 1.15 SS G_CDS: -2.22 Total: -1.08 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -1.52 Total: -1.94 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.25 -11.39 -46.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001586561651.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.141 kcal (2) G-P(sol) polarization free energy of solvation -35.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.28 seconds