Wall clock time and date at job start Thu Mar 26 2020 01:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.21280 * 1 3 3 N 1.34779 * 120.00345 * 2 1 4 4 C 1.39960 * 119.99636 * 4.39349 * 3 2 1 5 5 C 1.38993 * 120.09280 * 144.96497 * 4 3 2 6 6 C 1.38214 * 120.49072 * 180.02562 * 5 4 3 7 7 C 1.38135 * 120.14787 * 359.91594 * 6 5 4 8 8 C 1.39495 * 119.44832 * 359.95274 * 7 6 5 9 9 C 1.38767 * 120.65488 * 359.91563 * 8 7 6 10 Xx 1.57622 * 118.34127 * 180.29278 * 8 7 6 11 10 O 1.42006 * 122.03113 * 171.33848 * 10 8 7 12 11 O 1.43349 * 115.93739 * 351.35744 * 10 8 7 13 12 C 1.43318 * 111.34672 * 41.24317 * 12 10 8 14 13 C 1.50456 * 120.25864 * 179.77510 * 7 6 5 15 14 C 1.50703 * 120.00252 * 179.97438 * 2 1 3 16 15 O 1.42898 * 109.46667 * 0.02562 * 15 2 1 17 16 Si 1.86302 * 109.46936 * 120.00003 * 15 2 1 18 17 H 1.48495 * 109.47408 * 60.00536 * 17 15 2 19 18 H 1.48500 * 109.47058 * 180.02562 * 17 15 2 20 19 H 1.48505 * 109.47194 * 300.00084 * 17 15 2 21 20 C 1.50693 * 109.47321 * 240.00071 * 15 2 1 22 21 C 1.33355 * 125.18707 * 94.72316 * 21 15 2 23 22 C 1.38472 * 114.92634 * 179.79418 * 22 21 15 24 23 C 1.33497 * 114.88439 * 0.49471 * 23 22 21 25 24 Cl 1.73604 * 125.20690 * 179.71658 * 24 23 22 26 25 S 1.75876 * 125.19215 * 275.01962 * 21 15 2 27 26 H 0.97000 * 120.00473 * 184.65430 * 3 2 1 28 27 H 1.08002 * 119.75467 * 0.07615 * 5 4 3 29 28 H 1.08000 * 119.92631 * 179.90135 * 6 5 4 30 29 H 1.08005 * 120.28003 * 180.10074 * 9 8 7 31 30 H 0.96697 * 113.99798 * 180.02562 * 11 10 8 32 31 H 1.08996 * 109.33273 * 174.08909 * 13 12 10 33 32 H 1.09005 * 109.32435 * 54.61195 * 13 12 10 34 33 H 1.08998 * 109.13133 * 277.43985 * 14 7 6 35 34 H 1.08999 * 109.13959 * 36.62428 * 14 7 6 36 35 H 1.08001 * 122.53167 * 359.97438 * 22 21 15 37 36 H 1.08008 * 122.55563 * 180.23030 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.2128 0.0000 0.0000 3 7 1.8868 1.1672 0.0000 4 6 1.1901 2.3775 0.0929 5 6 1.7404 3.4468 0.7897 6 6 1.0593 4.6455 0.8871 7 6 -0.1772 4.7914 0.2890 8 6 -0.7301 3.7203 -0.4132 9 6 -0.0496 2.5153 -0.5165 10 8 -2.6936 2.9509 -1.9714 11 8 -2.8270 5.1325 -0.7658 12 6 -1.9291 6.2493 -0.7391 13 6 -0.9231 6.0935 0.3976 14 6 1.9664 -1.3051 0.0006 15 8 1.0377 -2.3912 0.0005 16 14 3.0374 -1.4044 -1.5205 17 1 4.0025 -0.2757 -1.5210 18 1 3.7795 -2.6906 -1.5203 19 1 2.1837 -1.3262 -2.7331 20 6 2.8327 -1.3844 1.2310 21 6 2.4893 -1.9757 2.3759 22 6 3.4521 -1.9266 3.3699 23 6 4.5739 -1.2856 3.0341 24 17 5.9466 -1.0595 4.0726 25 16 4.4482 -0.7048 1.3787 26 1 2.8544 1.1686 -0.0682 27 1 2.7078 3.3404 1.2580 28 1 1.4948 5.4699 1.4321 29 1 -0.4826 1.6905 -1.0630 30 1 -3.5628 3.1900 -2.3212 31 1 -2.4989 7.1670 -0.5934 32 1 -1.3954 6.3058 -1.6879 33 1 -1.4525 6.1236 1.3499 34 1 -0.2108 6.9177 0.3587 35 1 1.5336 -2.4590 2.5161 36 1 3.3049 -2.3693 4.3440 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001586561651.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 01:45:46 Heat of formation + Delta-G solvation = 48.871448 kcal Electronic energy + Delta-G solvation = -26012.698511 eV Core-core repulsion = 21894.665931 eV Total energy + Delta-G solvation = -4118.032580 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 355.029 amu Computer time = 4.00 seconds Orbital eigenvalues (eV) -41.91309 -40.13828 -38.85474 -37.53481 -37.09639 -35.64234 -34.18256 -32.72910 -32.29442 -32.01972 -29.93201 -29.13390 -26.79343 -24.79841 -24.18884 -23.66750 -21.83283 -21.69354 -20.06173 -19.04657 -18.30745 -17.83432 -17.11726 -16.81783 -16.44320 -16.37019 -16.13490 -15.58252 -15.27294 -15.15446 -15.00709 -14.64784 -14.58587 -14.46434 -14.26158 -14.23522 -13.89923 -13.56443 -13.38627 -13.05332 -12.89722 -12.64685 -12.52791 -12.38036 -12.11894 -11.89142 -11.68853 -11.53655 -11.16897 -10.85857 -10.69103 -10.57218 -9.72836 -9.53677 -9.46828 -9.43478 -8.69027 -8.07246 -6.50512 -2.74003 -0.50828 -0.32098 -0.14119 0.08867 0.76830 1.06488 1.08507 1.26518 1.29410 1.59160 1.76254 1.93060 2.12307 2.33232 2.97219 3.23181 3.41967 3.63851 3.80560 4.06905 4.17239 4.21030 4.33070 4.41370 4.42598 4.49632 4.54619 4.55448 4.73387 4.80732 4.93119 4.96932 4.98627 5.09607 5.34826 5.38654 5.41671 5.62752 6.16879 6.87297 7.00143 7.51427 Molecular weight = 355.03amu Principal moments of inertia in cm(-1) A = 0.013277 B = 0.003346 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.333606 B = 8365.653842 C = 9619.940374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.554 6.554 2 C 0.485 3.515 3 N -0.664 5.664 4 C 0.183 3.817 5 C -0.107 4.107 6 C -0.014 4.014 7 C -0.088 4.088 8 C 0.264 3.736 9 C -0.166 4.166 10 O -0.862 6.862 11 O -0.439 6.439 12 C 0.016 3.984 13 C -0.102 4.102 14 C 0.014 3.986 15 O -0.874 6.874 16 Si 0.909 3.091 17 H -0.182 1.182 18 H -0.254 1.254 19 H -0.289 1.289 20 C -0.170 4.170 21 C -0.138 4.138 22 C -0.107 4.107 23 C -0.153 4.153 24 Cl 0.001 6.999 25 S 0.145 5.855 26 H 0.428 0.572 27 H 0.213 0.787 28 H 0.250 0.750 29 H 0.125 0.875 30 H 0.301 0.699 31 H 0.182 0.818 32 H 0.091 0.909 33 H 0.112 0.888 34 H 0.164 0.836 35 H 0.112 0.888 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.299 21.823 10.248 30.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.429 6.429 2 C 0.276 3.724 3 N -0.316 5.316 4 C 0.086 3.914 5 C -0.126 4.126 6 C -0.031 4.031 7 C -0.090 4.090 8 C 0.254 3.746 9 C -0.187 4.187 10 O -0.687 6.687 11 O -0.383 6.383 12 C -0.065 4.065 13 C -0.138 4.138 14 C -0.089 4.089 15 O -0.820 6.820 16 Si 0.728 3.272 17 H -0.105 1.105 18 H -0.178 1.178 19 H -0.215 1.215 20 C -0.288 4.288 21 C -0.167 4.167 22 C -0.139 4.139 23 C -0.296 4.296 24 Cl 0.029 6.971 25 S 0.404 5.596 26 H 0.270 0.730 27 H 0.230 0.770 28 H 0.266 0.734 29 H 0.142 0.858 30 H 0.131 0.869 31 H 0.196 0.804 32 H 0.107 0.893 33 H 0.130 0.870 34 H 0.182 0.818 35 H 0.130 0.870 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 19.407 21.798 8.989 30.538 hybrid contribution -3.538 -2.193 -0.153 4.165 sum 15.870 19.605 8.836 26.726 Atomic orbital electron populations 1.90555 1.17074 1.87302 1.47989 1.24214 0.89353 0.86657 0.72171 1.44159 1.11421 1.02851 1.73217 1.17955 0.89401 0.88761 0.95237 1.22100 1.04111 0.90410 0.96024 1.21790 0.86234 0.99374 0.95669 1.21067 0.95546 0.96069 0.96284 1.29488 0.53460 0.95737 0.95883 1.21406 0.95622 0.98117 1.03518 1.93612 1.34471 1.62472 1.78109 1.95193 1.29240 1.24592 1.89270 1.23501 0.92677 0.92232 0.98112 1.21628 0.98175 0.92710 1.01328 1.22923 0.97111 0.90269 0.98603 1.95074 1.55089 1.39491 1.92301 0.86712 0.77812 0.83647 0.78998 1.10514 1.17762 1.21521 1.26026 0.98031 1.03605 1.01106 1.19933 1.00895 1.02891 0.92945 1.20234 0.91373 1.00834 1.01411 1.25064 0.95371 1.11820 0.97303 1.98334 1.39084 1.95919 1.63750 1.83404 1.11887 1.57395 1.06899 0.73022 0.77027 0.73399 0.85795 0.86866 0.80351 0.89252 0.87029 0.81809 0.87000 0.81561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 73. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -35.19 13.96 16.01 0.22 -34.96 16 2 C 0.49 25.03 5.84 87.66 0.51 25.54 16 3 N -0.66 -23.50 4.90 -303.42 -1.49 -24.99 16 4 C 0.18 5.49 6.30 38.16 0.24 5.73 16 5 C -0.11 -1.40 9.95 22.45 0.22 -1.18 16 6 C -0.01 -0.09 9.72 22.24 0.22 0.12 16 7 C -0.09 -1.52 5.79 -19.66 -0.11 -1.64 16 8 C 0.26 9.33 9.44 22.70 0.21 9.54 16 9 C -0.17 -6.79 8.51 22.54 0.19 -6.60 16 10 O -0.86 -54.01 17.84 -127.95 -2.28 -56.29 16 11 O -0.44 -17.24 14.34 -127.95 -1.83 -19.08 16 12 C 0.02 0.31 7.08 71.85 0.51 0.82 16 13 C -0.10 -0.98 5.95 29.64 0.18 -0.80 16 14 C 0.01 0.74 0.78 29.10 0.02 0.76 16 15 O -0.87 -62.79 16.56 -129.94 -2.15 -64.94 16 16 Si 0.91 40.54 24.68 68.60 1.69 42.23 16 17 H -0.18 -5.34 7.05 99.48 0.70 -4.64 16 18 H -0.25 -11.38 7.11 99.48 0.71 -10.67 16 19 H -0.29 -14.53 7.11 99.48 0.71 -13.82 16 20 C -0.17 -7.45 4.76 24.58 0.12 -7.33 16 21 C -0.14 -5.98 9.62 21.22 0.20 -5.78 16 22 C -0.11 -3.43 10.13 21.25 0.22 -3.21 16 23 C -0.15 -4.29 7.10 66.75 0.47 -3.82 16 24 Cl 0.00 0.01 29.29 -2.72 -0.08 -0.07 16 25 S 0.14 4.27 20.69 -56.49 -1.17 3.10 16 26 H 0.43 11.39 7.18 -92.71 -0.67 10.72 16 27 H 0.21 0.70 8.06 -2.91 -0.02 0.67 16 28 H 0.25 -1.88 8.06 -2.91 -0.02 -1.90 16 29 H 0.12 6.91 6.22 -2.91 -0.02 6.89 16 30 H 0.30 17.54 9.26 -74.06 -0.69 16.85 16 31 H 0.18 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 33 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.16 -0.46 8.12 -2.39 -0.02 -0.48 16 35 H 0.11 5.68 7.82 -2.91 -0.02 5.66 16 36 H 0.17 4.36 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -121.51 351.67 -3.31 -124.82 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 0.57 Total: 18.01 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: 3.20 Total: 12.17 kcal Atomic # 7 Polarization: -23.50 SS G_CDS: -1.49 Total: -24.99 kcal Atomic # 8 Polarization: -169.23 SS G_CDS: -6.05 Total: -175.28 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 1.69 Total: 42.23 kcal Atomic # 16 Polarization: 4.27 SS G_CDS: -1.17 Total: 3.10 kcal Atomic # 17 Polarization: 0.01 SS G_CDS: -0.08 Total: -0.07 kcal Total: -121.51 -3.31 -124.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001586561651.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.696 kcal (2) G-P(sol) polarization free energy of solvation -121.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -124.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.00 seconds