Wall clock time and date at job start Wed Mar 25 2020 20:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.18700 * 2 1 4 4 C 1.52596 * 109.32531 * 119.56025 * 2 1 3 5 5 C 1.50448 * 111.18285 * 176.12980 * 4 2 1 6 6 C 1.38137 * 120.26248 * 157.00934 * 5 4 2 7 7 C 1.38217 * 120.15166 * 180.02562 * 6 5 4 8 8 C 1.39004 * 120.48607 * 359.40037 * 7 6 5 9 9 N 1.39952 * 120.08691 * 180.31920 * 8 7 6 10 10 C 1.34785 * 119.99609 * 145.21676 * 9 8 7 11 11 O 1.21284 * 119.99952 * 4.65832 * 10 9 8 12 12 C 1.50695 * 119.99890 * 184.65358 * 10 9 8 13 13 O 1.42900 * 109.47145 * 180.02562 * 12 10 9 14 14 Si 1.86303 * 109.47444 * 300.00441 * 12 10 9 15 15 H 1.48503 * 109.46996 * 59.99655 * 14 12 10 16 16 H 1.48498 * 109.47301 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47146 * 300.00042 * 14 12 10 18 18 C 1.50700 * 109.46970 * 60.00323 * 12 10 9 19 19 C 1.38267 * 119.94910 * 274.72461 * 18 12 10 20 20 C 1.38142 * 120.06083 * 179.72713 * 19 18 12 21 21 C 1.38732 * 119.93912 * 0.56636 * 20 19 18 22 22 O 1.35902 * 120.05248 * 179.68452 * 21 20 19 23 23 C 1.38734 * 119.89113 * 359.71014 * 21 20 19 24 24 C 1.38144 * 119.94328 * 359.97438 * 23 21 20 25 25 C 1.38818 * 119.81783 * 0.60956 * 8 7 6 26 26 C 1.38761 * 119.44363 * 359.77377 * 25 8 7 27 Xx 1.57620 * 121.00538 * 179.71944 * 26 25 8 28 27 O 1.41996 * 122.03229 * 351.49330 * 27 26 25 29 28 O 1.43321 * 109.32744 * 240.43499 * 2 1 3 30 29 H 1.09003 * 109.46852 * 300.44637 * 1 2 3 31 30 H 1.08999 * 109.46670 * 60.44045 * 1 2 3 32 31 H 1.09001 * 109.47662 * 180.44064 * 1 2 3 33 32 H 1.08998 * 109.47152 * 179.56214 * 3 2 1 34 33 H 1.09002 * 109.47108 * 299.55865 * 3 2 1 35 34 H 1.08993 * 109.47363 * 59.55721 * 3 2 1 36 35 H 1.09005 * 109.13572 * 55.68610 * 4 2 1 37 36 H 1.08999 * 109.08960 * 296.53516 * 4 2 1 38 37 H 1.07996 * 119.92334 * 359.74077 * 6 5 4 39 38 H 1.08006 * 119.75272 * 179.64252 * 7 6 5 40 39 H 0.96999 * 120.00805 * 325.22479 * 9 8 7 41 40 H 1.08001 * 119.96510 * 359.97438 * 19 18 12 42 41 H 1.07999 * 120.02897 * 180.25178 * 20 19 18 43 42 H 0.96702 * 113.99700 * 270.02147 * 22 21 20 44 43 H 1.08004 * 120.02702 * 179.97438 * 23 21 20 45 44 H 1.07998 * 119.97155 * 180.02562 * 24 23 21 46 45 H 1.08000 * 120.27405 * 179.79250 * 25 8 7 47 46 H 0.96692 * 114.00137 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0328 1.4450 0.0000 4 6 2.0349 -0.7104 1.2526 5 6 3.5356 -0.8173 1.2492 6 6 4.2249 -0.9754 2.4358 7 6 5.6037 -1.0729 2.4301 8 6 6.3090 -1.0256 1.2332 9 7 7.7045 -1.1318 1.2366 10 6 8.3346 -1.7648 0.2272 11 8 7.7009 -2.1681 -0.7252 12 6 9.8263 -1.9714 0.2818 13 8 10.2552 -2.6602 -0.8945 14 14 10.6792 -0.3179 0.3783 15 1 10.2336 0.3983 1.6004 16 1 12.1492 -0.5216 0.4327 17 1 10.3347 0.4875 -0.8208 18 6 10.1760 -2.7888 1.4986 19 6 10.3559 -2.1661 2.7200 20 6 10.6709 -2.9137 3.8381 21 6 10.8183 -4.2891 3.7324 22 8 11.1345 -5.0261 4.8296 23 6 10.6429 -4.9109 2.5046 24 6 10.3215 -4.1595 1.3908 25 6 5.6259 -0.8668 0.0352 26 6 4.2424 -0.7616 0.0477 27 8 4.0721 -0.3273 -2.5325 28 8 2.0043 -0.6673 -1.1763 29 1 -0.3633 0.5208 0.8860 30 1 -0.3632 0.5070 -0.8939 31 1 -0.3634 -1.0276 0.0079 32 1 3.1227 1.4504 0.0079 33 1 1.6734 1.9547 -0.8939 34 1 1.6605 1.9592 0.8859 35 1 1.6054 -1.7114 1.2933 36 1 1.7187 -0.1499 2.1323 37 1 3.6857 -1.0183 3.3705 38 1 6.1365 -1.1905 3.3621 39 1 8.2183 -0.7500 1.9654 40 1 10.2461 -1.0947 2.8007 41 1 10.8074 -2.4273 4.7926 42 1 12.0851 -5.1334 4.9706 43 1 10.7575 -5.9815 2.4197 44 1 10.1844 -4.6431 0.4350 45 1 6.1668 -0.8258 -0.8987 46 1 3.4633 -0.2312 -3.2775 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001634795243.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Mar 25 2020 20:42:30 Heat of formation + Delta-G solvation = -1.972377 kcal Electronic energy + Delta-G solvation = -31942.953596 eV Core-core repulsion = 27463.606379 eV Total energy + Delta-G solvation = -4479.347218 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 359.142 amu Computer time = 8.12 seconds Orbital eigenvalues (eV) -41.94487 -40.66317 -40.01929 -38.30209 -37.65069 -35.93179 -33.94848 -32.77195 -32.43262 -32.07052 -31.89300 -31.39707 -30.05631 -28.34597 -27.83737 -25.92274 -24.17644 -23.54732 -23.26929 -22.30997 -21.07338 -20.30914 -19.22851 -18.61327 -18.04327 -17.36562 -17.01311 -16.59997 -16.41634 -16.27079 -16.13105 -15.67504 -15.47716 -15.38549 -15.28015 -14.97487 -14.89625 -14.62803 -14.53864 -14.30368 -14.23574 -13.56669 -13.40487 -13.33143 -13.13231 -13.00784 -12.90670 -12.80557 -12.61768 -12.49257 -12.43427 -12.35376 -12.01258 -11.88116 -11.60220 -11.14977 -11.08008 -10.82658 -10.67994 -10.57850 -9.83304 -9.76008 -9.48905 -9.30523 -8.52715 -7.91089 -6.56911 -2.73444 -0.49324 -0.31139 0.36083 0.51958 1.12342 1.20234 1.40439 1.69897 1.93504 2.16822 2.44429 2.85493 2.97821 3.20920 3.42763 3.44056 3.63295 3.74243 3.88011 3.99655 4.04127 4.06048 4.20398 4.22907 4.30674 4.42241 4.53267 4.57990 4.60835 4.63021 4.65552 4.70882 4.76281 4.80308 4.85406 4.91153 4.96906 5.05739 5.10387 5.19611 5.22092 5.26027 5.44964 5.49553 5.56036 5.65662 5.94974 6.03833 6.30276 6.74760 6.98256 7.13219 7.69663 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.013900 B = 0.002865 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.915487 B = 9771.551827 C =10738.529290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.063 3.937 3 C -0.153 4.153 4 C -0.090 4.090 5 C -0.092 4.092 6 C -0.016 4.016 7 C -0.107 4.107 8 C 0.185 3.815 9 N -0.661 5.661 10 C 0.482 3.518 11 O -0.565 6.565 12 C -0.028 4.028 13 O -0.896 6.896 14 Si 0.955 3.045 15 H -0.180 1.180 16 H -0.267 1.267 17 H -0.317 1.317 18 C -0.097 4.097 19 C -0.131 4.131 20 C -0.121 4.121 21 C 0.092 3.908 22 O -0.502 6.502 23 C -0.152 4.152 24 C -0.103 4.103 25 C -0.170 4.170 26 C 0.268 3.732 27 O -0.823 6.823 28 O -0.438 6.438 29 H 0.124 0.876 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.032 0.968 33 H 0.041 0.959 34 H 0.115 0.885 35 H 0.108 0.892 36 H 0.161 0.839 37 H 0.248 0.752 38 H 0.215 0.785 39 H 0.433 0.567 40 H 0.157 0.843 41 H 0.172 0.828 42 H 0.408 0.592 43 H 0.129 0.871 44 H 0.079 0.921 45 H 0.123 0.877 46 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.431 7.088 28.587 31.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.014 3.986 3 C -0.210 4.210 4 C -0.126 4.126 5 C -0.094 4.094 6 C -0.033 4.033 7 C -0.127 4.127 8 C 0.088 3.912 9 N -0.314 5.314 10 C 0.274 3.726 11 O -0.441 6.441 12 C -0.127 4.127 13 O -0.842 6.842 14 Si 0.777 3.223 15 H -0.104 1.104 16 H -0.191 1.191 17 H -0.246 1.246 18 C -0.098 4.098 19 C -0.148 4.148 20 C -0.139 4.139 21 C 0.048 3.952 22 O -0.314 6.314 23 C -0.171 4.171 24 C -0.122 4.122 25 C -0.191 4.191 26 C 0.259 3.741 27 O -0.648 6.648 28 O -0.383 6.383 29 H 0.142 0.858 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.133 0.867 35 H 0.126 0.874 36 H 0.179 0.821 37 H 0.264 0.736 38 H 0.232 0.768 39 H 0.275 0.725 40 H 0.175 0.825 41 H 0.190 0.810 42 H 0.266 0.734 43 H 0.147 0.853 44 H 0.098 0.902 45 H 0.141 0.859 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.271 7.135 28.151 31.152 hybrid contribution 0.473 -0.610 -3.999 4.073 sum -10.799 6.524 24.152 27.249 Atomic orbital electron populations 1.22336 0.85924 1.03944 1.04584 1.22353 0.94348 0.93162 0.88746 1.22536 0.99949 0.94890 1.03612 1.21580 0.85972 1.04708 1.00324 1.21048 1.00540 1.02924 0.84872 1.21778 0.92159 0.94934 0.94475 1.22085 0.95043 0.98508 0.97046 1.17984 0.84942 0.98132 0.90142 1.44181 1.03622 1.56674 1.26911 1.24550 0.93678 0.73930 0.80445 1.90534 1.68094 1.50294 1.35220 1.23646 0.87615 1.06861 0.94600 1.95031 1.81910 1.72930 1.34300 0.86283 0.81344 0.75079 0.79597 1.10380 1.19143 1.24562 1.21027 0.98193 0.95097 0.95454 1.21286 1.01461 1.01371 0.90727 1.21578 1.00549 0.92194 0.99614 1.18378 1.01309 0.90270 0.85283 1.84749 1.31247 1.72865 1.42579 1.21506 1.02947 1.00464 0.92135 1.20796 0.99144 0.94893 0.97339 1.21416 0.91670 1.05025 1.00942 1.29380 0.82972 1.08236 0.53560 1.93614 1.39079 1.98528 1.33610 1.95173 1.27757 1.75156 1.40231 0.85775 0.92780 0.91121 0.94859 0.93932 0.86665 0.87377 0.82102 0.73569 0.76809 0.72517 0.82549 0.81042 0.73367 0.85260 0.90239 0.85920 0.86324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 92. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.67 8.81 71.98 0.63 -1.04 16 2 C 0.06 1.47 1.09 -10.93 -0.01 1.46 16 3 C -0.15 -3.46 8.56 71.98 0.62 -2.85 16 4 C -0.09 -1.21 4.67 29.63 0.14 -1.07 16 5 C -0.09 -1.82 5.24 -19.66 -0.10 -1.92 16 6 C -0.02 -0.14 9.72 22.24 0.22 0.08 16 7 C -0.11 -1.50 9.95 22.45 0.22 -1.28 16 8 C 0.18 5.71 6.30 38.17 0.24 5.95 16 9 N -0.66 -23.44 4.89 -303.42 -1.49 -24.92 16 10 C 0.48 25.37 5.85 87.65 0.51 25.88 16 11 O -0.57 -37.00 13.94 15.99 0.22 -36.78 16 12 C -0.03 -1.52 0.72 29.10 0.02 -1.50 16 13 O -0.90 -66.21 16.03 -129.94 -2.08 -68.30 16 14 Si 0.95 42.05 24.12 68.60 1.65 43.70 16 15 H -0.18 -4.78 6.30 99.48 0.63 -4.15 16 16 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 17 H -0.32 -16.33 7.11 99.48 0.71 -15.62 16 18 C -0.10 -4.30 4.46 -19.85 -0.09 -4.38 16 19 C -0.13 -3.93 7.84 22.25 0.17 -3.76 16 20 C -0.12 -2.91 9.99 22.37 0.22 -2.69 16 21 C 0.09 2.54 6.70 22.51 0.15 2.69 16 22 O -0.50 -10.61 13.50 -92.45 -1.25 -11.86 16 23 C -0.15 -5.38 9.99 22.37 0.22 -5.15 16 24 C -0.10 -4.83 9.34 22.25 0.21 -4.62 16 25 C -0.17 -7.18 8.51 22.53 0.19 -6.98 16 26 C 0.27 9.93 8.12 22.70 0.18 10.11 16 27 O -0.82 -51.17 17.85 -127.95 -2.28 -53.45 16 28 O -0.44 -18.16 13.61 -127.95 -1.74 -19.91 16 29 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.03 0.95 6.39 -2.39 -0.02 0.93 16 33 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.11 1.29 8.14 -2.38 -0.02 1.27 16 36 H 0.16 0.14 8.12 -2.39 -0.02 0.12 16 37 H 0.25 -1.44 8.06 -2.91 -0.02 -1.47 16 38 H 0.22 0.76 8.06 -2.91 -0.02 0.73 16 39 H 0.43 10.78 6.58 -92.71 -0.61 10.17 16 40 H 0.16 3.48 5.13 -2.91 -0.01 3.46 16 41 H 0.17 2.50 8.06 -2.91 -0.02 2.47 16 42 H 0.41 4.51 9.06 -74.06 -0.67 3.84 16 43 H 0.13 4.10 8.06 -2.91 -0.02 4.08 16 44 H 0.08 4.52 7.35 -2.91 -0.02 4.49 16 45 H 0.12 7.01 6.19 -2.91 -0.02 6.99 16 46 H 0.31 17.69 9.26 -74.06 -0.69 17.00 16 Total: -1.00 -130.99 389.49 -3.44 -134.43 By element: Atomic # 1 Polarization: 28.40 SS G_CDS: -0.23 Total: 28.17 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: 3.75 Total: 8.91 kcal Atomic # 7 Polarization: -23.44 SS G_CDS: -1.49 Total: -24.92 kcal Atomic # 8 Polarization: -183.16 SS G_CDS: -7.13 Total: -190.29 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 1.65 Total: 43.70 kcal Total: -130.99 -3.44 -134.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001634795243.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.458 kcal (2) G-P(sol) polarization free energy of solvation -130.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -134.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.12 seconds