Wall clock time and date at job start Thu Mar 26 2020 01:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31795 * 119.12427 * 2 1 4 4 C 1.32332 * 120.81777 * 180.02562 * 3 2 1 5 5 C 1.38606 * 119.10306 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.79857 * 180.02562 * 5 4 3 7 7 N 1.46902 * 109.47195 * 89.99807 * 6 5 4 8 8 C 1.46843 * 111.00361 * 293.95734 * 7 6 5 9 9 C 1.50144 * 110.27161 * 287.53549 * 8 7 6 10 10 C 1.29827 * 123.28470 * 343.20389 * 9 8 7 11 11 C 1.50704 * 118.55240 * 180.11368 * 10 9 8 12 12 N 1.46504 * 109.46691 * 95.00511 * 11 10 9 13 13 C 1.34777 * 119.99464 * 179.97438 * 12 11 10 14 14 O 1.21281 * 120.00139 * 355.25469 * 13 12 11 15 15 C 1.50703 * 119.99807 * 175.24734 * 13 12 11 16 16 O 1.42900 * 109.46775 * 34.60841 * 15 13 12 17 17 Si 1.86302 * 109.47041 * 154.60505 * 15 13 12 18 18 H 1.48501 * 109.46733 * 60.00335 * 17 15 13 19 19 H 1.48493 * 109.46839 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.46980 * 300.00372 * 17 15 13 21 21 C 1.52995 * 109.47419 * 274.60881 * 15 13 12 22 22 C 1.53002 * 109.47515 * 64.24950 * 21 15 13 23 23 C 1.53002 * 109.47019 * 184.25028 * 21 15 13 24 24 C 1.52997 * 109.47075 * 304.24807 * 21 15 13 25 25 C 1.50305 * 122.89328 * 359.87378 * 10 9 8 26 26 C 1.47241 * 111.00109 * 171.01879 * 7 6 5 27 27 C 1.38597 * 118.40073 * 0.27546 * 5 4 3 28 28 N 1.31794 * 119.11650 * 180.02562 * 2 1 3 29 29 H 1.09008 * 109.47082 * 89.99928 * 1 2 3 30 30 H 1.08995 * 109.47988 * 210.00375 * 1 2 3 31 31 H 1.09004 * 109.47270 * 330.00672 * 1 2 3 32 32 H 1.07997 * 120.45158 * 180.02562 * 4 3 2 33 33 H 1.09000 * 109.47287 * 330.00726 * 6 5 4 34 34 H 1.08995 * 109.47090 * 210.00121 * 6 5 4 35 35 H 1.08997 * 109.33809 * 167.28653 * 8 7 6 36 36 H 1.08997 * 109.33560 * 47.78060 * 8 7 6 37 37 H 1.08002 * 118.35425 * 162.92860 * 9 8 7 38 38 H 1.08999 * 109.46649 * 215.00352 * 11 10 9 39 39 H 1.09000 * 109.47095 * 335.00610 * 11 10 9 40 40 H 0.96992 * 120.00350 * 359.97438 * 12 11 10 41 41 H 1.09000 * 109.46999 * 59.99499 * 22 21 15 42 42 H 1.08990 * 109.47625 * 180.02562 * 22 21 15 43 43 H 1.09007 * 109.46624 * 300.00609 * 22 21 15 44 44 H 1.08992 * 109.47254 * 60.00153 * 23 21 15 45 45 H 1.09007 * 109.46932 * 180.02562 * 23 21 15 46 46 H 1.08999 * 109.47246 * 299.99236 * 23 21 15 47 47 H 1.09007 * 109.47084 * 55.46066 * 24 21 15 48 48 H 1.09005 * 109.47366 * 175.45591 * 24 21 15 49 49 H 1.08999 * 109.47343 * 295.46013 * 24 21 15 50 50 H 1.08996 * 109.55645 * 223.75446 * 25 10 9 51 51 H 1.08996 * 109.24999 * 103.93900 * 25 10 9 52 52 H 1.09002 * 109.63840 * 174.28010 * 26 7 6 53 53 H 1.08997 * 109.64064 * 294.68841 * 26 7 6 54 54 H 1.07997 * 120.44589 * 179.72459 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1484 1.1513 0.0000 4 6 3.4712 1.1904 -0.0005 5 6 4.1808 -0.0002 -0.0005 6 6 5.6878 -0.0002 -0.0005 7 7 6.1775 -0.0002 1.3845 8 6 5.8282 1.2526 2.0662 9 6 6.6712 2.3807 1.5457 10 6 7.7658 2.1998 0.8714 11 6 8.5309 3.4102 0.4019 12 7 9.5828 3.7289 1.3706 13 6 10.3992 4.7799 1.1573 14 8 10.3201 5.4094 0.1237 15 6 11.4104 5.1729 2.2033 16 8 11.8986 4.0003 2.8581 17 14 12.8290 6.0665 1.3909 18 1 12.3216 7.2850 0.7105 19 1 13.8256 6.4532 2.4216 20 1 13.4704 5.1731 0.3932 21 6 10.7495 6.0933 3.2313 22 6 9.6534 5.3256 3.9731 23 6 11.8002 6.5771 4.2327 24 6 10.1339 7.2976 2.5162 25 6 8.3062 0.8363 0.5428 26 6 7.6335 -0.2149 1.4294 27 6 3.4711 -1.1906 -0.0058 28 7 2.1483 -1.1514 -0.0005 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3635 -0.8899 0.5138 31 1 -0.3634 0.8901 0.5137 32 1 3.9908 2.1372 -0.0001 33 1 6.0512 0.8898 -0.5142 34 1 6.0511 -0.8902 -0.5143 35 1 5.9971 1.1400 3.1371 36 1 4.7762 1.4776 1.8910 37 1 6.3487 3.3933 1.7382 38 1 8.9816 3.2013 -0.5684 39 1 7.8511 4.2574 0.3118 40 1 9.6916 3.1837 2.1653 41 1 10.0919 4.4675 4.4825 42 1 9.1822 5.9814 4.7051 43 1 8.9049 4.9809 3.2596 44 1 12.5810 7.1240 3.7044 45 1 11.3292 7.2325 4.9654 46 1 12.2387 5.7191 4.7423 47 1 9.4444 6.9500 1.7468 48 1 9.5940 7.9115 3.2373 49 1 10.9245 7.8895 2.0550 50 1 9.3826 0.8195 0.7136 51 1 8.1024 0.6117 -0.5041 52 1 7.9877 -0.1100 2.4549 53 1 7.8681 -1.2135 1.0612 54 1 3.9906 -2.1375 -0.0105 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755884496.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 01:08:04 Heat of formation + Delta-G solvation = -55.999123 kcal Electronic energy + Delta-G solvation = -33579.384993 eV Core-core repulsion = 29322.572290 eV Total energy + Delta-G solvation = -4256.812703 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 361.215 amu Computer time = 26.07 seconds Orbital eigenvalues (eV) -42.20003 -40.98756 -40.33037 -37.58410 -36.50614 -34.80465 -34.70942 -33.16032 -31.95138 -31.86397 -30.47217 -28.34412 -27.98238 -27.71771 -26.46897 -25.70430 -25.22654 -24.43126 -23.41314 -22.25985 -21.34525 -19.71274 -18.74247 -18.58064 -17.67612 -17.48228 -17.01697 -16.89816 -16.48793 -16.19558 -16.15137 -15.71003 -15.55213 -15.23556 -15.05428 -14.64728 -14.59676 -14.54926 -14.40224 -14.16137 -14.09168 -14.01010 -13.60869 -13.44896 -13.20196 -13.18223 -13.12230 -12.96964 -12.90825 -12.67277 -12.48837 -12.38216 -12.26278 -12.00875 -11.82729 -11.81731 -11.78186 -11.61757 -11.56966 -11.18961 -11.03023 -10.80422 -10.26967 -10.21026 -9.94391 -9.79988 -9.33920 -8.07740 -7.63764 -0.14045 0.10755 0.96681 1.37734 1.45156 1.62614 1.99658 2.46557 2.62944 3.02715 3.05897 3.10653 3.21023 3.62961 3.67869 3.68922 3.79587 3.90670 4.05569 4.15445 4.24391 4.26488 4.31505 4.33740 4.40723 4.47093 4.51514 4.56054 4.61434 4.69002 4.71867 4.75521 4.77651 4.81051 4.84774 4.90959 4.92783 4.96175 5.00663 5.03137 5.04503 5.06301 5.09164 5.13801 5.25715 5.30013 5.38440 5.48600 5.61367 5.71202 5.79904 5.81804 5.85718 5.91500 6.02663 6.03810 6.82437 7.10197 7.43310 7.94842 Molecular weight = 361.22amu Principal moments of inertia in cm(-1) A = 0.019487 B = 0.002179 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.524975 B =12848.696987 C =13224.748222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.295 3.705 3 N -0.539 5.539 4 C 0.147 3.853 5 C -0.182 4.182 6 C 0.099 3.901 7 N -0.520 5.520 8 C 0.082 3.918 9 C -0.160 4.160 10 C -0.133 4.133 11 C 0.151 3.849 12 N -0.703 5.703 13 C 0.500 3.500 14 O -0.613 6.613 15 C -0.015 4.015 16 O -0.889 6.889 17 Si 0.951 3.049 18 H -0.283 1.283 19 H -0.280 1.280 20 H -0.325 1.325 21 C -0.088 4.088 22 C -0.106 4.106 23 C -0.126 4.126 24 C -0.142 4.142 25 C -0.118 4.118 26 C 0.061 3.939 27 C 0.165 3.835 28 N -0.537 5.537 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.172 0.828 33 H 0.054 0.946 34 H 0.109 0.891 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.110 0.890 38 H 0.049 0.951 39 H 0.059 0.941 40 H 0.408 0.592 41 H 0.042 0.958 42 H 0.059 0.941 43 H 0.041 0.959 44 H 0.035 0.965 45 H 0.074 0.926 46 H 0.043 0.957 47 H 0.039 0.961 48 H 0.075 0.925 49 H 0.042 0.958 50 H 0.065 0.935 51 H 0.088 0.912 52 H 0.075 0.925 53 H 0.105 0.895 54 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.113 -10.431 -2.123 22.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.028 3.972 3 N -0.254 5.254 4 C -0.019 4.019 5 C -0.187 4.187 6 C -0.030 4.030 7 N -0.241 5.241 8 C -0.046 4.046 9 C -0.181 4.181 10 C -0.133 4.133 11 C 0.028 3.972 12 N -0.355 5.355 13 C 0.290 3.710 14 O -0.498 6.498 15 C -0.118 4.118 16 O -0.837 6.837 17 Si 0.785 3.215 18 H -0.210 1.210 19 H -0.207 1.207 20 H -0.254 1.254 21 C -0.089 4.089 22 C -0.163 4.163 23 C -0.183 4.183 24 C -0.199 4.199 25 C -0.157 4.157 26 C -0.067 4.067 27 C -0.001 4.001 28 N -0.251 5.251 29 H 0.114 0.886 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.189 0.811 33 H 0.072 0.928 34 H 0.127 0.873 35 H 0.111 0.889 36 H 0.105 0.895 37 H 0.128 0.872 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.244 0.756 41 H 0.061 0.939 42 H 0.078 0.922 43 H 0.060 0.940 44 H 0.054 0.946 45 H 0.092 0.908 46 H 0.062 0.938 47 H 0.058 0.942 48 H 0.094 0.906 49 H 0.061 0.939 50 H 0.084 0.916 51 H 0.107 0.893 52 H 0.094 0.906 53 H 0.123 0.877 54 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -20.669 -10.206 -2.812 23.223 hybrid contribution 1.894 0.661 -0.388 2.043 sum -18.776 -9.545 -3.200 21.304 Atomic orbital electron populations 1.20648 0.84032 1.04783 1.04676 1.23844 0.99561 0.83466 0.90290 1.68331 1.10544 1.31027 1.15470 1.23423 0.89465 0.99173 0.89802 1.21549 0.98462 0.95224 1.03418 1.20968 0.88246 1.03615 0.90161 1.62821 1.13459 1.32876 1.14985 1.21163 0.98499 0.85579 0.99374 1.22915 0.96450 1.01266 0.97420 1.20884 0.96138 0.94975 1.01335 1.20339 0.89214 0.95424 0.92256 1.45901 1.32674 1.31011 1.25904 1.23318 0.80878 0.78366 0.88419 1.90375 1.72858 1.55893 1.30689 1.24232 0.93641 0.99309 0.94598 1.94924 1.81640 1.32806 1.74319 0.86097 0.83588 0.76162 0.75666 1.21046 1.20674 1.25371 1.20989 0.96387 0.94925 0.96606 1.21498 0.96411 0.99497 0.98934 1.21698 0.97981 1.00010 0.98650 1.21947 1.00211 0.97738 1.00024 1.21061 1.00827 0.92050 1.01735 1.22290 0.85430 0.98709 1.00240 1.23567 0.88970 0.99352 0.88175 1.68367 1.10830 1.30573 1.15350 0.88619 0.88833 0.89167 0.81102 0.92796 0.87330 0.88887 0.89520 0.87220 0.93302 0.92291 0.75577 0.93876 0.92214 0.93967 0.94606 0.90762 0.93822 0.94166 0.90611 0.93921 0.91644 0.89336 0.90604 0.87716 0.79166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.06 10.32 71.24 0.74 -0.32 16 2 C 0.30 5.76 7.64 138.75 1.06 6.82 16 3 N -0.54 -11.36 10.33 -187.84 -1.94 -13.31 16 4 C 0.15 2.70 9.19 84.71 0.78 3.48 16 5 C -0.18 -2.91 4.93 -19.69 -0.10 -3.00 16 6 C 0.10 1.40 4.27 85.56 0.36 1.76 16 7 N -0.52 -8.54 5.02 -905.51 -4.55 -13.08 16 8 C 0.08 1.49 5.78 85.39 0.49 1.98 16 9 C -0.16 -3.53 8.96 26.68 0.24 -3.29 16 10 C -0.13 -3.41 4.60 -15.40 -0.07 -3.48 16 11 C 0.15 5.25 5.73 85.63 0.49 5.74 16 12 N -0.70 -30.94 4.26 -466.77 -1.99 -32.93 16 13 C 0.50 26.19 4.73 87.66 0.41 26.60 16 14 O -0.61 -33.93 14.44 -3.03 -0.04 -33.98 16 15 C -0.02 -0.85 0.27 29.85 0.01 -0.84 16 16 O -0.89 -56.77 15.57 -148.98 -2.32 -59.09 16 17 Si 0.95 52.33 22.16 68.60 1.52 53.85 16 18 H -0.28 -14.76 6.49 99.48 0.65 -14.12 16 19 H -0.28 -14.73 6.37 99.48 0.63 -14.10 16 20 H -0.32 -19.28 7.11 99.48 0.71 -18.57 16 21 C -0.09 -4.05 0.38 -52.18 -0.02 -4.07 16 22 C -0.11 -4.36 7.77 71.98 0.56 -3.80 16 23 C -0.13 -5.45 7.78 71.98 0.56 -4.89 16 24 C -0.14 -5.85 7.69 71.98 0.55 -5.30 16 25 C -0.12 -2.60 5.26 29.75 0.16 -2.44 16 26 C 0.06 1.06 6.03 86.27 0.52 1.58 16 27 C 0.17 2.66 11.01 84.70 0.93 3.59 16 28 N -0.54 -10.51 10.33 -187.84 -1.94 -12.45 16 29 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 30 H 0.09 1.00 8.14 -2.39 -0.02 0.99 16 31 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 32 H 0.17 2.75 7.84 -2.91 -0.02 2.73 16 33 H 0.05 0.86 5.95 -2.39 -0.01 0.85 16 34 H 0.11 1.15 8.05 -2.39 -0.02 1.13 16 35 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.09 1.50 5.36 -2.39 -0.01 1.49 16 37 H 0.11 2.49 7.81 -2.91 -0.02 2.47 16 38 H 0.05 1.80 8.13 -2.39 -0.02 1.78 16 39 H 0.06 2.05 7.85 -2.39 -0.02 2.03 16 40 H 0.41 18.28 7.43 -92.71 -0.69 17.59 16 41 H 0.04 1.94 7.58 -2.39 -0.02 1.92 16 42 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.04 1.68 6.35 -2.38 -0.02 1.67 16 44 H 0.03 1.55 5.37 -2.39 -0.01 1.54 16 45 H 0.07 2.56 8.14 -2.38 -0.02 2.54 16 46 H 0.04 2.05 7.80 -2.39 -0.02 2.03 16 47 H 0.04 1.74 6.45 -2.38 -0.02 1.72 16 48 H 0.08 2.52 8.14 -2.38 -0.02 2.50 16 49 H 0.04 1.79 6.01 -2.39 -0.01 1.78 16 50 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 51 H 0.09 1.68 7.13 -2.39 -0.02 1.67 16 52 H 0.08 1.49 8.08 -2.39 -0.02 1.47 16 53 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 54 H 0.19 1.99 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -74.24 408.94 -2.74 -76.98 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: 0.84 Total: 13.88 kcal Atomic # 6 Polarization: 12.45 SS G_CDS: 7.68 Total: 20.13 kcal Atomic # 7 Polarization: -61.36 SS G_CDS: -10.42 Total: -71.77 kcal Atomic # 8 Polarization: -90.70 SS G_CDS: -2.36 Total: -93.06 kcal Atomic # 14 Polarization: 52.33 SS G_CDS: 1.52 Total: 53.85 kcal Total: -74.24 -2.74 -76.98 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755884496.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.982 kcal (2) G-P(sol) polarization free energy of solvation -74.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 26.07 seconds