Wall clock time and date at job start Wed Mar 25 2020 21:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47441 * 2 1 4 4 C 1.52997 * 109.47450 * 239.99619 * 2 1 3 5 5 C 1.53000 * 109.47037 * 119.99619 * 2 1 3 6 6 O 1.42900 * 109.47404 * 176.91977 * 5 2 1 7 7 Si 1.86305 * 109.47325 * 296.92020 * 5 2 1 8 8 H 1.48496 * 109.47319 * 186.04218 * 7 5 2 9 9 H 1.48506 * 109.46960 * 306.04226 * 7 5 2 10 10 H 1.48502 * 109.46929 * 66.04072 * 7 5 2 11 11 C 1.50702 * 109.47156 * 56.91887 * 5 2 1 12 12 O 1.21274 * 120.00055 * 358.43772 * 11 5 2 13 13 N 1.34783 * 119.99838 * 178.43391 * 11 5 2 14 14 C 1.46929 * 120.62757 * 185.21006 * 13 11 5 15 15 C 1.53189 * 108.77385 * 126.41648 * 14 13 11 16 16 C 1.53037 * 109.31505 * 54.63070 * 15 14 13 17 17 C 1.53000 * 109.45960 * 178.62520 * 16 15 14 18 18 N 1.46502 * 109.45624 * 58.65627 * 16 15 14 19 19 C 1.31803 * 120.00047 * 213.59854 * 18 16 15 20 20 C 1.47057 * 121.55429 * 144.38732 * 19 18 16 21 21 C 1.34752 * 118.17016 * 193.45286 * 20 19 18 22 22 N 1.36237 * 121.06442 * 359.81529 * 21 20 19 23 23 H 0.96995 * 118.76435 * 165.10895 * 22 21 20 24 24 C 1.35334 * 122.48011 * 345.08103 * 22 21 20 25 25 C 1.36784 * 120.50211 * 15.15843 * 24 22 21 26 26 C 1.43197 * 121.12220 * 179.53177 * 25 24 22 27 27 N 8.53559 * 122.39622 * 130.97320 * 2 1 3 28 28 C 1.53039 * 109.54169 * 298.63748 * 16 15 14 29 29 C 1.46925 * 120.63010 * 5.23232 * 13 11 5 30 30 H 1.09005 * 109.47282 * 304.47355 * 1 2 3 31 31 H 1.09001 * 109.47447 * 64.47701 * 1 2 3 32 32 H 1.09005 * 109.47397 * 184.47842 * 1 2 3 33 33 H 1.08991 * 109.47540 * 179.97438 * 3 2 1 34 34 H 1.09004 * 109.46628 * 300.00056 * 3 2 1 35 35 H 1.08994 * 109.47098 * 59.99481 * 3 2 1 36 36 H 1.09004 * 109.47024 * 299.99827 * 4 2 1 37 37 H 1.08997 * 109.47148 * 59.99660 * 4 2 1 38 38 H 1.08994 * 109.47337 * 180.02562 * 4 2 1 39 39 H 1.09003 * 109.58566 * 6.62524 * 14 13 11 40 40 H 1.08993 * 109.70099 * 246.27330 * 14 13 11 41 41 H 1.09009 * 109.49760 * 294.67924 * 15 14 13 42 42 H 1.09000 * 109.52400 * 174.60315 * 15 14 13 43 43 H 1.08998 * 109.47269 * 327.89388 * 17 16 15 44 44 H 1.09004 * 109.46921 * 87.89004 * 17 16 15 45 45 H 1.09000 * 109.47267 * 207.88466 * 17 16 15 46 46 H 1.07994 * 120.91121 * 13.25367 * 20 19 18 47 47 H 1.08000 * 119.46464 * 180.09786 * 21 20 19 48 48 H 1.08005 * 119.75415 * 195.17940 * 24 22 21 49 49 H 1.08998 * 109.49862 * 181.31845 * 28 16 15 50 50 H 1.09004 * 109.49419 * 301.41239 * 28 16 15 51 51 H 1.08996 * 109.58794 * 353.37593 * 29 13 11 52 52 H 1.09005 * 109.58215 * 113.66045 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0399 -0.7212 1.2493 6 8 3.4671 -0.7842 1.2137 7 14 1.4972 0.2099 2.7690 8 1 2.1125 -0.4051 3.9724 9 1 1.9286 1.6269 2.6617 10 1 0.0178 0.1502 2.8840 11 6 1.4762 -2.1182 1.2882 12 8 0.7167 -2.4901 0.4189 13 7 1.8162 -2.9545 2.2890 14 6 1.3669 -4.3534 2.2808 15 6 2.5881 -5.2643 2.4409 16 6 3.3602 -4.8594 3.6987 17 6 4.5617 -5.7891 3.8806 18 7 2.4810 -4.9640 4.8659 19 6 2.6153 -4.1207 5.8698 20 6 1.4524 -3.6350 6.6277 21 6 1.6231 -2.5794 7.4476 22 7 2.8391 -1.9785 7.5761 23 1 2.8858 -1.1039 7.9930 24 6 3.9843 -2.5560 7.1445 25 6 3.9445 -3.6229 6.2895 26 6 5.1482 -4.2379 5.8167 27 7 6.1031 -4.7258 5.4415 28 6 3.8494 -3.4163 3.5566 29 6 2.6426 -2.4844 3.4092 30 1 -0.3634 0.5817 0.8472 31 1 -0.3634 0.4428 -0.9274 32 1 -0.3634 -1.0246 0.0802 33 1 3.1299 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 1.6767 -1.7490 -1.2491 37 1 1.6767 -0.2076 -2.1392 38 1 3.1300 -0.7217 -1.2489 39 1 0.8693 -4.5718 1.3359 40 1 0.6747 -4.5218 3.1057 41 1 3.2343 -5.1631 1.5689 42 1 2.2605 -6.2999 2.5327 43 1 4.3152 -6.7802 3.4996 44 1 5.4154 -5.3910 3.3322 45 1 4.8104 -5.8584 4.9396 46 1 0.4874 -4.1094 6.5275 47 1 0.7835 -2.2064 8.0154 48 1 4.9371 -2.1719 7.4779 49 1 4.4192 -3.1364 4.4427 50 1 4.4838 -3.3325 2.6741 51 1 2.9867 -1.4698 3.2088 52 1 2.0548 -2.4964 4.3271 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001067247592.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Mar 25 2020 21:17:57 Heat of formation + Delta-G solvation = 67.079898 kcal Electronic energy + Delta-G solvation = -35813.693074 eV Core-core repulsion = 31589.528957 eV Total energy + Delta-G solvation = -4224.164118 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 359.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.76558 -39.29969 -38.21150 -36.59456 -35.23309 -34.15883 -32.84226 -31.99840 -30.59952 -29.53281 -29.19154 -27.53793 -26.11699 -25.93477 -24.52300 -24.08468 -22.98410 -22.59309 -21.67518 -20.23881 -19.34681 -18.41794 -17.39466 -16.97398 -16.74611 -15.79063 -15.46673 -15.10080 -14.80439 -14.58786 -14.27878 -14.13588 -13.80373 -13.60624 -13.45423 -13.33479 -13.22926 -13.00419 -12.90077 -12.71216 -12.48274 -12.36207 -12.06981 -11.87642 -11.68187 -11.49009 -11.29462 -11.02007 -10.83799 -10.78720 -10.60751 -10.48266 -10.38775 -10.23912 -9.89685 -9.80443 -9.72672 -9.68711 -9.48262 -9.27746 -9.13120 -8.81553 -8.49674 -8.18434 -7.40792 -7.21181 -5.73679 -5.28978 0.89078 1.27775 2.59370 2.79130 2.95939 3.31867 3.40343 3.48032 3.62537 4.01946 4.03446 4.26607 4.35047 4.55147 4.73458 4.87993 5.12784 5.24158 5.30725 5.47467 5.49983 5.71399 5.82666 5.89610 5.95861 6.05844 6.07755 6.15052 6.18804 6.22990 6.28076 6.30616 6.35209 6.41263 6.51521 6.56828 6.66185 6.67439 6.71120 6.78484 6.83713 6.85756 6.87711 6.92519 6.96173 7.04768 7.11698 7.27225 7.32217 7.36332 7.60986 7.63436 7.78220 7.86964 7.88373 8.30076 8.82165 9.67091 10.04273 Molecular weight = 359.20amu Principal moments of inertia in cm(-1) A = 0.012758 B = 0.004612 C = 0.004120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.132152 B = 6069.596198 C = 6794.149327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.065 4.065 3 C -0.132 4.132 4 C -0.114 4.114 5 C 0.018 3.982 6 O -0.826 6.826 7 Si 0.890 3.110 8 H -0.270 1.270 9 H -0.275 1.275 10 H -0.301 1.301 11 C 0.505 3.495 12 O -0.574 6.574 13 N -0.604 5.604 14 C 0.115 3.885 15 C -0.099 4.099 16 C 0.118 3.882 17 C -0.173 4.173 18 N -0.557 5.557 19 C 0.265 3.735 20 C -0.157 4.157 21 C 0.086 3.914 22 N -0.607 5.607 23 H 0.421 0.579 24 C 0.192 3.808 25 C -0.173 4.173 26 C 0.273 3.727 27 N -0.418 5.418 28 C -0.150 4.150 29 C 0.112 3.888 30 H 0.030 0.970 31 H 0.031 0.969 32 H 0.089 0.911 33 H 0.063 0.937 34 H 0.032 0.968 35 H 0.038 0.962 36 H 0.060 0.940 37 H 0.017 0.983 38 H 0.052 0.948 39 H 0.079 0.921 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.048 0.952 44 H 0.060 0.940 45 H 0.070 0.930 46 H 0.153 0.847 47 H 0.167 0.833 48 H 0.166 0.834 49 H 0.073 0.927 50 H 0.079 0.921 51 H 0.119 0.881 52 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.475 -0.926 16.803 17.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.066 4.066 3 C -0.189 4.189 4 C -0.171 4.171 5 C -0.085 4.085 6 O -0.772 6.772 7 Si 0.721 3.279 8 H -0.197 1.197 9 H -0.202 1.202 10 H -0.230 1.230 11 C 0.299 3.701 12 O -0.456 6.456 13 N -0.339 5.339 14 C -0.008 4.008 15 C -0.138 4.138 16 C 0.027 3.973 17 C -0.231 4.231 18 N -0.272 5.272 19 C 0.084 3.916 20 C -0.182 4.182 21 C -0.037 4.037 22 N -0.214 5.214 23 H 0.257 0.743 24 C 0.057 3.943 25 C -0.188 4.188 26 C -0.039 4.039 27 N -0.097 5.097 28 C -0.189 4.189 29 C -0.011 4.011 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.107 0.893 33 H 0.082 0.918 34 H 0.051 0.949 35 H 0.057 0.943 36 H 0.079 0.921 37 H 0.036 0.964 38 H 0.071 0.929 39 H 0.097 0.903 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.067 0.933 44 H 0.079 0.921 45 H 0.088 0.912 46 H 0.171 0.829 47 H 0.184 0.816 48 H 0.183 0.817 49 H 0.091 0.909 50 H 0.097 0.903 51 H 0.137 0.863 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.900 -2.284 16.019 16.293 hybrid contribution 0.447 0.752 0.207 0.899 sum -1.454 -1.532 16.226 16.363 Atomic orbital electron populations 1.22352 0.97395 1.03748 0.98475 1.20734 0.92646 0.94540 0.98728 1.21819 1.02145 0.96314 0.98671 1.21596 1.00910 1.00411 0.94204 1.23459 1.00116 0.88358 0.96519 1.95008 1.00748 1.90704 1.90739 0.87671 0.74537 0.80854 0.84832 1.19666 1.20154 1.23002 1.23687 0.77393 0.90629 0.78413 1.90284 1.37737 1.78680 1.38874 1.48037 1.52449 1.09717 1.23658 1.21315 0.95513 0.82128 1.01853 1.21753 0.97638 0.99007 0.95422 1.20994 0.91329 0.94660 0.90311 1.23093 0.97585 0.99362 1.03062 1.72259 1.37922 1.15719 1.01274 1.21258 0.88419 0.87348 0.94621 1.22026 0.98034 0.99187 0.98916 1.21543 0.87810 0.96505 0.97862 1.40764 1.04679 1.20579 1.55373 0.74278 1.21607 0.90571 0.91681 0.90447 1.17365 0.90017 1.04622 1.06807 1.24391 0.92639 0.93516 0.93344 1.81260 1.10984 1.08366 1.09042 1.22711 0.99498 0.94075 1.02617 1.22183 0.90247 1.00835 0.87863 0.95089 0.94977 0.89259 0.91836 0.94934 0.94346 0.92105 0.96377 0.92864 0.90293 0.91999 0.91572 0.91505 0.93269 0.92148 0.91155 0.82929 0.81585 0.81710 0.90904 0.90280 0.86328 0.93833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.82 7.67 37.15 0.28 -3.53 16 2 C -0.07 -1.67 0.34 -154.51 -0.05 -1.73 16 3 C -0.13 -3.14 7.80 37.16 0.29 -2.85 16 4 C -0.11 -2.91 8.04 37.16 0.30 -2.61 16 5 C 0.02 0.50 0.12 -27.88 0.00 0.49 16 6 O -0.83 -26.16 14.90 -35.23 -0.53 -26.68 16 7 Si 0.89 21.84 20.57 -169.99 -3.50 18.34 16 8 H -0.27 -6.10 5.06 56.52 0.29 -5.81 16 9 H -0.28 -6.70 6.07 56.52 0.34 -6.36 16 10 H -0.30 -7.18 6.74 56.52 0.38 -6.80 16 11 C 0.50 13.60 5.60 -10.98 -0.06 13.54 16 12 O -0.57 -15.79 10.80 5.56 0.06 -15.73 16 13 N -0.60 -14.54 2.93 -172.77 -0.51 -15.05 16 14 C 0.12 2.41 6.16 -3.71 -0.02 2.39 16 15 C -0.10 -1.92 4.94 -26.61 -0.13 -2.05 16 16 C 0.12 2.20 0.66 -131.78 -0.09 2.11 16 17 C -0.17 -3.09 7.19 37.16 0.27 -2.83 16 18 N -0.56 -9.52 9.17 -42.85 -0.39 -9.91 16 19 C 0.27 3.79 4.24 -80.30 -0.34 3.45 16 20 C -0.16 -1.64 9.85 -37.24 -0.37 -2.00 16 21 C 0.09 0.57 11.10 -16.83 -0.19 0.38 16 22 N -0.61 -3.45 5.22 -12.68 -0.07 -3.52 16 23 H 0.42 0.84 8.88 -40.82 -0.36 0.48 16 24 C 0.19 1.52 10.86 -16.53 -0.18 1.34 16 25 C -0.17 -2.19 4.09 -104.49 -0.43 -2.61 16 26 C 0.27 4.10 9.36 -22.47 -0.21 3.89 16 27 N -0.42 -6.97 15.23 41.84 0.64 -6.34 16 28 C -0.15 -3.09 4.01 -26.61 -0.11 -3.20 16 29 C 0.11 2.50 3.73 -3.71 -0.01 2.49 16 30 H 0.03 0.69 6.10 -51.93 -0.32 0.37 16 31 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.09 2.23 5.09 -51.93 -0.26 1.96 16 33 H 0.06 1.59 7.77 -51.93 -0.40 1.19 16 34 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.04 0.88 5.26 -51.93 -0.27 0.61 16 36 H 0.06 1.63 5.84 -51.93 -0.30 1.33 16 37 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.05 1.44 7.60 -51.93 -0.39 1.05 16 39 H 0.08 1.72 7.04 -51.93 -0.37 1.35 16 40 H 0.06 1.22 7.74 -51.93 -0.40 0.82 16 41 H 0.07 1.36 8.14 -51.92 -0.42 0.94 16 42 H 0.07 1.16 8.09 -51.93 -0.42 0.74 16 43 H 0.05 0.84 7.83 -51.93 -0.41 0.43 16 44 H 0.06 1.14 7.32 -51.93 -0.38 0.76 16 45 H 0.07 1.24 4.08 -52.82 -0.22 1.03 16 46 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 47 H 0.17 0.43 8.06 -52.49 -0.42 0.00 16 48 H 0.17 0.73 8.06 -52.48 -0.42 0.31 16 49 H 0.07 1.37 3.30 -51.93 -0.17 1.20 16 50 H 0.08 1.88 8.14 -51.93 -0.42 1.46 16 51 H 0.12 3.03 2.81 -51.93 -0.15 2.88 16 52 H 0.04 0.89 5.54 -51.93 -0.29 0.60 16 LS Contribution 367.62 15.07 5.54 5.54 Total: -1.00 -37.37 367.62 -7.29 -44.65 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -7.48 Total: 2.01 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: -1.05 Total: 6.68 kcal Atomic # 7 Polarization: -34.48 SS G_CDS: -0.33 Total: -34.81 kcal Atomic # 8 Polarization: -41.94 SS G_CDS: -0.47 Total: -42.41 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -3.50 Total: 18.34 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -37.37 -7.29 -44.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001067247592.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.735 kcal (2) G-P(sol) polarization free energy of solvation -37.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds