Wall clock time and date at job start Wed Mar 25 2020 21:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47441 * 2 1 4 4 C 1.52997 * 109.47450 * 239.99619 * 2 1 3 5 5 C 1.53000 * 109.47037 * 119.99619 * 2 1 3 6 6 O 1.42900 * 109.47404 * 176.91977 * 5 2 1 7 7 Si 1.86305 * 109.47325 * 296.92020 * 5 2 1 8 8 H 1.48496 * 109.47319 * 186.04218 * 7 5 2 9 9 H 1.48506 * 109.46960 * 306.04226 * 7 5 2 10 10 H 1.48502 * 109.46929 * 66.04072 * 7 5 2 11 11 C 1.50702 * 109.47156 * 56.91887 * 5 2 1 12 12 O 1.21274 * 120.00055 * 358.43772 * 11 5 2 13 13 N 1.34783 * 119.99838 * 178.43391 * 11 5 2 14 14 C 1.46929 * 120.62757 * 185.21006 * 13 11 5 15 15 C 1.53189 * 108.77385 * 126.41648 * 14 13 11 16 16 C 1.53037 * 109.31505 * 54.63070 * 15 14 13 17 17 C 1.53000 * 109.45960 * 178.62520 * 16 15 14 18 18 N 1.46502 * 109.45624 * 58.65627 * 16 15 14 19 19 C 1.31803 * 120.00047 * 213.59854 * 18 16 15 20 20 C 1.47057 * 121.55429 * 144.38732 * 19 18 16 21 21 C 1.34752 * 118.17016 * 193.45286 * 20 19 18 22 22 N 1.36237 * 121.06442 * 359.81529 * 21 20 19 23 23 H 0.96995 * 118.76435 * 165.10895 * 22 21 20 24 24 C 1.35334 * 122.48011 * 345.08103 * 22 21 20 25 25 C 1.36784 * 120.50211 * 15.15843 * 24 22 21 26 26 C 1.43197 * 121.12220 * 179.53177 * 25 24 22 27 27 N 8.53559 * 122.39622 * 130.97320 * 2 1 3 28 28 C 1.53039 * 109.54169 * 298.63748 * 16 15 14 29 29 C 1.46925 * 120.63010 * 5.23232 * 13 11 5 30 30 H 1.09005 * 109.47282 * 304.47355 * 1 2 3 31 31 H 1.09001 * 109.47447 * 64.47701 * 1 2 3 32 32 H 1.09005 * 109.47397 * 184.47842 * 1 2 3 33 33 H 1.08991 * 109.47540 * 179.97438 * 3 2 1 34 34 H 1.09004 * 109.46628 * 300.00056 * 3 2 1 35 35 H 1.08994 * 109.47098 * 59.99481 * 3 2 1 36 36 H 1.09004 * 109.47024 * 299.99827 * 4 2 1 37 37 H 1.08997 * 109.47148 * 59.99660 * 4 2 1 38 38 H 1.08994 * 109.47337 * 180.02562 * 4 2 1 39 39 H 1.09003 * 109.58566 * 6.62524 * 14 13 11 40 40 H 1.08993 * 109.70099 * 246.27330 * 14 13 11 41 41 H 1.09009 * 109.49760 * 294.67924 * 15 14 13 42 42 H 1.09000 * 109.52400 * 174.60315 * 15 14 13 43 43 H 1.08998 * 109.47269 * 327.89388 * 17 16 15 44 44 H 1.09004 * 109.46921 * 87.89004 * 17 16 15 45 45 H 1.09000 * 109.47267 * 207.88466 * 17 16 15 46 46 H 1.07994 * 120.91121 * 13.25367 * 20 19 18 47 47 H 1.08000 * 119.46464 * 180.09786 * 21 20 19 48 48 H 1.08005 * 119.75415 * 195.17940 * 24 22 21 49 49 H 1.08998 * 109.49862 * 181.31845 * 28 16 15 50 50 H 1.09004 * 109.49419 * 301.41239 * 28 16 15 51 51 H 1.08996 * 109.58794 * 353.37593 * 29 13 11 52 52 H 1.09005 * 109.58215 * 113.66045 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0399 -0.7212 1.2493 6 8 3.4671 -0.7842 1.2137 7 14 1.4972 0.2099 2.7690 8 1 2.1125 -0.4051 3.9724 9 1 1.9286 1.6269 2.6617 10 1 0.0178 0.1502 2.8840 11 6 1.4762 -2.1182 1.2882 12 8 0.7167 -2.4901 0.4189 13 7 1.8162 -2.9545 2.2890 14 6 1.3669 -4.3534 2.2808 15 6 2.5881 -5.2643 2.4409 16 6 3.3602 -4.8594 3.6987 17 6 4.5617 -5.7891 3.8806 18 7 2.4810 -4.9640 4.8659 19 6 2.6153 -4.1207 5.8698 20 6 1.4524 -3.6350 6.6277 21 6 1.6231 -2.5794 7.4476 22 7 2.8391 -1.9785 7.5761 23 1 2.8858 -1.1039 7.9930 24 6 3.9843 -2.5560 7.1445 25 6 3.9445 -3.6229 6.2895 26 6 5.1482 -4.2379 5.8167 27 7 6.1031 -4.7258 5.4415 28 6 3.8494 -3.4163 3.5566 29 6 2.6426 -2.4844 3.4092 30 1 -0.3634 0.5817 0.8472 31 1 -0.3634 0.4428 -0.9274 32 1 -0.3634 -1.0246 0.0802 33 1 3.1299 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 1.6767 -1.7490 -1.2491 37 1 1.6767 -0.2076 -2.1392 38 1 3.1300 -0.7217 -1.2489 39 1 0.8693 -4.5718 1.3359 40 1 0.6747 -4.5218 3.1057 41 1 3.2343 -5.1631 1.5689 42 1 2.2605 -6.2999 2.5327 43 1 4.3152 -6.7802 3.4996 44 1 5.4154 -5.3910 3.3322 45 1 4.8104 -5.8584 4.9396 46 1 0.4874 -4.1094 6.5275 47 1 0.7835 -2.2064 8.0154 48 1 4.9371 -2.1719 7.4779 49 1 4.4192 -3.1364 4.4427 50 1 4.4838 -3.3325 2.6741 51 1 2.9867 -1.4698 3.2088 52 1 2.0548 -2.4964 4.3271 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001067247592.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Mar 25 2020 21:17:55 Heat of formation + Delta-G solvation = 36.723063 kcal Electronic energy + Delta-G solvation = -35815.009446 eV Core-core repulsion = 31589.528957 eV Total energy + Delta-G solvation = -4225.480489 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 359.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.89837 -40.80083 -39.65577 -38.01489 -36.99168 -35.66822 -34.21860 -32.79399 -32.31913 -31.45029 -30.28047 -29.17060 -27.99583 -27.95168 -25.98709 -25.46037 -24.24872 -24.19065 -23.16582 -21.18380 -20.87614 -19.82822 -18.90289 -18.19390 -17.73828 -17.58038 -16.81581 -16.59620 -16.31635 -15.84136 -15.67712 -15.58703 -15.27531 -15.16487 -15.05277 -14.78830 -14.70610 -14.51697 -14.35173 -14.23007 -14.09149 -13.80694 -13.71627 -13.18508 -12.98583 -12.96221 -12.84134 -12.83252 -12.69381 -12.42049 -12.31965 -12.17328 -12.05155 -11.90081 -11.72791 -11.61594 -11.51364 -11.24808 -11.12205 -11.02760 -10.70661 -10.37301 -10.21970 -9.67608 -9.20806 -8.18352 -7.95769 -7.49566 0.08333 0.45748 1.35749 1.47010 1.57724 1.61688 1.88711 2.03717 2.19432 2.40647 2.64594 2.77236 3.12659 3.51035 3.69233 3.74979 3.93081 3.98166 4.16291 4.26021 4.28838 4.32867 4.36951 4.37791 4.40403 4.42882 4.51929 4.54523 4.58644 4.73735 4.75815 4.79884 4.88362 4.90443 4.92350 4.99726 5.01494 5.02945 5.05789 5.09007 5.13917 5.16510 5.23068 5.26495 5.30097 5.38912 5.41583 5.61705 5.63951 5.83381 5.89620 5.99192 6.02207 6.45386 6.57506 6.86638 7.25902 7.64010 7.97182 Molecular weight = 359.20amu Principal moments of inertia in cm(-1) A = 0.012758 B = 0.004612 C = 0.004120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.132152 B = 6069.596198 C = 6794.149327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.082 4.082 3 C -0.125 4.125 4 C -0.104 4.104 5 C -0.027 4.027 6 O -0.883 6.883 7 Si 0.926 3.074 8 H -0.243 1.243 9 H -0.272 1.272 10 H -0.285 1.285 11 C 0.490 3.510 12 O -0.593 6.593 13 N -0.609 5.609 14 C 0.121 3.879 15 C -0.096 4.096 16 C 0.130 3.870 17 C -0.163 4.163 18 N -0.609 5.609 19 C 0.269 3.731 20 C -0.199 4.199 21 C 0.127 3.873 22 N -0.582 5.582 23 H 0.448 0.552 24 C 0.238 3.762 25 C -0.235 4.235 26 C 0.287 3.713 27 N -0.469 5.469 28 C -0.141 4.141 29 C 0.119 3.881 30 H 0.042 0.958 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.036 0.964 34 H 0.063 0.937 35 H 0.046 0.954 36 H 0.037 0.963 37 H 0.047 0.953 38 H 0.021 0.979 39 H 0.063 0.937 40 H 0.081 0.919 41 H 0.036 0.964 42 H 0.084 0.916 43 H 0.049 0.951 44 H 0.037 0.963 45 H 0.075 0.925 46 H 0.159 0.841 47 H 0.223 0.777 48 H 0.209 0.791 49 H 0.094 0.906 50 H 0.027 0.973 51 H 0.090 0.910 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.848 1.790 21.212 21.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.083 4.083 3 C -0.182 4.182 4 C -0.161 4.161 5 C -0.127 4.127 6 O -0.831 6.831 7 Si 0.753 3.247 8 H -0.168 1.168 9 H -0.198 1.198 10 H -0.213 1.213 11 C 0.283 3.717 12 O -0.477 6.477 13 N -0.342 5.342 14 C -0.002 4.002 15 C -0.135 4.135 16 C 0.038 3.962 17 C -0.221 4.221 18 N -0.328 5.328 19 C 0.092 3.908 20 C -0.224 4.224 21 C 0.002 3.998 22 N -0.189 5.189 23 H 0.290 0.710 24 C 0.100 3.900 25 C -0.251 4.251 26 C -0.024 4.024 27 N -0.149 5.149 28 C -0.180 4.180 29 C -0.004 4.004 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.056 0.944 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.040 0.960 39 H 0.081 0.919 40 H 0.099 0.901 41 H 0.055 0.945 42 H 0.103 0.897 43 H 0.068 0.932 44 H 0.056 0.944 45 H 0.094 0.906 46 H 0.177 0.823 47 H 0.240 0.760 48 H 0.226 0.774 49 H 0.111 0.889 50 H 0.045 0.955 51 H 0.108 0.892 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.288 0.473 20.498 20.947 hybrid contribution 1.146 0.063 -0.962 1.497 sum -3.143 0.536 19.536 19.795 Atomic orbital electron populations 1.22204 0.95465 1.03055 1.00329 1.20868 0.94289 0.95355 0.97782 1.21733 1.00453 0.95476 1.00587 1.21462 0.98741 0.99699 0.96186 1.24211 0.98487 0.89639 1.00320 1.94951 1.03832 1.91785 1.92517 0.86962 0.75184 0.79756 0.82789 1.16841 1.19759 1.21295 1.23764 0.77680 0.91317 0.78915 1.90258 1.38809 1.79149 1.39495 1.48145 1.52024 1.10545 1.23515 1.21365 0.96274 0.80902 1.01614 1.21688 0.96692 0.99737 0.95350 1.20642 0.91295 0.92712 0.91503 1.23011 0.96871 0.99253 1.02945 1.72287 1.37753 1.20190 1.02524 1.21948 0.90152 0.85345 0.93372 1.22201 0.97309 1.01419 1.01481 1.22377 0.88933 0.93732 0.94796 1.41178 1.04062 1.21197 1.52440 0.71046 1.22208 0.92917 0.88545 0.86346 1.17435 0.88513 1.08141 1.11016 1.24897 0.92658 0.92562 0.92269 1.81263 1.12760 1.10139 1.10747 1.22582 0.98337 0.95931 1.01177 1.22116 0.90826 0.99437 0.88012 0.93942 0.92424 0.91107 0.94436 0.91801 0.93542 0.94376 0.93406 0.96003 0.91883 0.90116 0.94478 0.89715 0.93195 0.94433 0.90647 0.82306 0.76046 0.77398 0.88867 0.95460 0.89174 0.91193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.96 7.67 71.98 0.55 -6.41 16 2 C -0.08 -4.19 0.34 -52.18 -0.02 -4.21 16 3 C -0.13 -5.81 7.80 71.98 0.56 -5.25 16 4 C -0.10 -5.45 8.04 71.98 0.58 -4.87 16 5 C -0.03 -1.48 0.12 29.85 0.00 -1.47 16 6 O -0.88 -58.45 14.90 -148.98 -2.22 -60.67 16 7 Si 0.93 43.13 20.57 68.60 1.41 44.54 16 8 H -0.24 -10.11 5.06 99.48 0.50 -9.60 16 9 H -0.27 -12.39 6.07 99.48 0.60 -11.79 16 10 H -0.29 -12.44 6.74 99.48 0.67 -11.77 16 11 C 0.49 27.14 5.60 87.66 0.49 27.63 16 12 O -0.59 -33.81 10.80 -3.01 -0.03 -33.85 16 13 N -0.61 -30.09 2.93 -818.91 -2.40 -32.49 16 14 C 0.12 5.26 6.16 86.36 0.53 5.79 16 15 C -0.10 -3.94 4.94 30.67 0.15 -3.79 16 16 C 0.13 5.07 0.66 3.63 0.00 5.07 16 17 C -0.16 -6.23 7.19 71.98 0.52 -5.71 16 18 N -0.61 -20.75 9.17 -289.48 -2.65 -23.41 16 19 C 0.27 7.14 4.24 44.06 0.19 7.33 16 20 C -0.20 -3.33 9.85 23.78 0.23 -3.09 16 21 C 0.13 0.78 11.10 83.21 0.92 1.70 16 22 N -0.58 -2.38 5.22 -194.02 -1.01 -3.39 16 23 H 0.45 -2.04 8.88 -92.71 -0.82 -2.86 16 24 C 0.24 2.50 10.86 83.81 0.91 3.41 16 25 C -0.23 -5.40 4.09 -19.78 -0.08 -5.48 16 26 C 0.29 8.58 9.36 88.33 0.83 9.41 16 27 N -0.47 -16.27 15.23 19.00 0.29 -15.98 16 28 C -0.14 -6.09 4.01 30.67 0.12 -5.96 16 29 C 0.12 5.33 3.73 86.36 0.32 5.65 16 30 H 0.04 1.78 6.10 -2.38 -0.01 1.77 16 31 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.07 3.50 5.09 -2.38 -0.01 3.49 16 33 H 0.04 1.89 7.77 -2.39 -0.02 1.87 16 34 H 0.06 2.49 8.14 -2.38 -0.02 2.47 16 35 H 0.05 2.03 5.26 -2.39 -0.01 2.02 16 36 H 0.04 2.13 5.84 -2.38 -0.01 2.11 16 37 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.02 1.22 7.60 -2.39 -0.02 1.20 16 39 H 0.06 2.89 7.04 -2.39 -0.02 2.87 16 40 H 0.08 3.21 7.74 -2.39 -0.02 3.19 16 41 H 0.04 1.67 8.14 -2.38 -0.02 1.66 16 42 H 0.08 3.11 8.09 -2.39 -0.02 3.09 16 43 H 0.05 1.82 7.83 -2.39 -0.02 1.80 16 44 H 0.04 1.55 7.32 -2.39 -0.02 1.53 16 45 H 0.08 2.81 4.08 -4.14 -0.02 2.79 16 46 H 0.16 2.44 8.06 -2.91 -0.02 2.41 16 47 H 0.22 -0.91 8.06 -2.91 -0.02 -0.93 16 48 H 0.21 0.49 8.06 -2.91 -0.02 0.47 16 49 H 0.09 3.58 3.30 -2.39 -0.01 3.57 16 50 H 0.03 1.40 8.14 -2.39 -0.02 1.39 16 51 H 0.09 4.61 2.81 -2.39 -0.01 4.60 16 52 H 0.07 2.72 5.54 -2.38 -0.01 2.71 16 Total: -1.00 -91.86 367.62 0.76 -91.10 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 0.56 Total: 14.41 kcal Atomic # 6 Polarization: 12.93 SS G_CDS: 6.82 Total: 19.75 kcal Atomic # 7 Polarization: -69.49 SS G_CDS: -5.78 Total: -75.27 kcal Atomic # 8 Polarization: -92.27 SS G_CDS: -2.25 Total: -94.52 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 1.41 Total: 44.54 kcal Total: -91.86 0.76 -91.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001067247592.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.823 kcal (2) G-P(sol) polarization free energy of solvation -91.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds