Wall clock time and date at job start Thu Mar 26 2020 07:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47378 * 2 1 4 4 C 1.53006 * 109.47358 * 119.99988 * 2 1 3 5 5 C 1.52998 * 109.46953 * 240.00032 * 2 1 3 6 6 O 1.42908 * 109.46862 * 184.21569 * 5 2 1 7 7 Si 1.86295 * 109.47381 * 304.21154 * 5 2 1 8 8 H 1.48498 * 109.47127 * 60.00033 * 7 5 2 9 9 H 1.48504 * 109.47602 * 180.02562 * 7 5 2 10 10 H 1.48504 * 109.47438 * 300.00539 * 7 5 2 11 11 C 1.50694 * 109.47382 * 64.21282 * 5 2 1 12 12 O 1.21276 * 120.00608 * 267.33032 * 11 5 2 13 13 N 1.34784 * 119.99857 * 87.32705 * 11 5 2 14 14 C 1.47538 * 125.67022 * 354.96087 * 13 11 5 15 15 C 1.55351 * 104.86803 * 156.03802 * 14 13 11 16 16 C 1.53906 * 101.36210 * 36.03183 * 15 14 13 17 17 C 1.53029 * 111.33217 * 86.49969 * 16 15 14 18 18 C 1.54696 * 104.58150 * 120.98208 * 17 16 15 19 19 N 1.48676 * 104.63557 * 23.68371 * 18 17 16 20 20 C 1.38555 * 111.00251 * 201.60108 * 19 18 17 21 21 C 1.39819 * 120.49201 * 59.59181 * 20 19 18 22 22 C 1.38266 * 118.48278 * 179.76057 * 21 20 19 23 23 N 1.32356 * 119.28664 * 0.52458 * 22 21 20 24 24 C 1.32559 * 120.94034 * 359.73872 * 23 22 21 25 25 C 1.43200 * 119.16773 * 180.02562 * 24 23 22 26 26 N 9.24745 * 119.80964 * 170.90077 * 15 1 2 27 27 N 1.32606 * 121.65685 * 359.97438 * 24 23 22 28 28 C 1.48863 * 104.42794 * 321.27711 * 19 18 17 29 29 C 1.47342 * 125.67031 * 175.25929 * 13 11 5 30 30 H 1.09000 * 109.47265 * 55.18428 * 1 2 3 31 31 H 1.09005 * 109.47277 * 295.18400 * 1 2 3 32 32 H 1.08998 * 109.47093 * 175.18564 * 1 2 3 33 33 H 1.09003 * 109.46961 * 59.99802 * 3 2 1 34 34 H 1.08997 * 109.47309 * 180.02562 * 3 2 1 35 35 H 1.09003 * 109.46789 * 300.00424 * 3 2 1 36 36 H 1.09006 * 109.46674 * 59.99569 * 4 2 1 37 37 H 1.08997 * 109.47295 * 179.97438 * 4 2 1 38 38 H 1.09003 * 109.46932 * 300.00169 * 4 2 1 39 39 H 1.09007 * 110.33651 * 275.00275 * 14 13 11 40 40 H 1.08994 * 110.34604 * 37.25126 * 14 13 11 41 41 H 1.08998 * 111.21482 * 277.96134 * 15 14 13 42 42 H 1.08998 * 110.96307 * 153.99297 * 15 14 13 43 43 H 1.09000 * 110.41486 * 239.75671 * 17 16 15 44 44 H 1.09000 * 110.41277 * 2.08622 * 17 16 15 45 45 H 1.08995 * 110.40530 * 142.47169 * 18 17 16 46 46 H 1.09004 * 110.40177 * 264.78246 * 18 17 16 47 47 H 1.07995 * 120.76094 * 0.02562 * 21 20 19 48 48 H 1.07992 * 120.35633 * 180.23705 * 22 21 20 49 49 H 1.09000 * 110.46597 * 279.59923 * 28 19 18 50 50 H 1.08999 * 110.47059 * 157.00940 * 28 19 18 51 51 H 1.08995 * 109.97121 * 301.27120 * 29 13 11 52 52 H 1.09003 * 109.96491 * 62.53482 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 2.0399 -0.7212 -1.2492 6 8 3.4656 -0.8076 -1.2008 7 14 1.3159 -2.4365 -1.3152 8 1 -0.1656 -2.3468 -1.3655 9 1 1.8113 -3.1368 -2.5274 10 1 1.7250 -3.1934 -0.1048 11 6 1.6246 0.0468 -2.4775 12 8 0.5890 -0.2300 -3.0445 13 7 2.4042 1.0416 -2.9458 14 6 3.6289 1.5515 -2.3001 15 6 4.4518 2.1889 -3.4533 16 6 3.3356 2.7885 -4.3269 17 6 2.9539 4.1935 -3.8555 18 6 3.2153 5.1000 -5.0815 19 7 3.1338 4.1843 -6.2500 20 6 3.8007 4.7135 -7.3431 21 6 5.1656 5.0072 -7.2675 22 6 5.7906 5.5294 -8.3849 23 7 5.0820 5.7444 -9.4819 24 6 3.7876 5.4616 -9.5236 25 6 3.0577 5.7089 -10.7305 26 7 2.4784 5.9058 -11.6878 27 7 3.1520 4.9545 -8.4761 28 6 3.7853 2.9295 -5.7839 29 6 2.1718 1.8046 -4.1846 30 1 -0.3634 0.5867 -0.8437 31 1 -0.3634 0.4373 0.9300 32 1 -0.3633 -1.0240 -0.0862 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 -1.7490 1.2493 37 1 3.1300 -0.7217 1.2490 38 1 1.6767 -0.2074 2.1393 39 1 3.3776 2.3024 -1.5509 40 1 4.1863 0.7329 -1.8450 41 1 5.0138 1.4327 -4.0015 42 1 5.1139 2.9679 -3.0756 43 1 1.9012 4.2276 -3.5750 44 1 3.5802 4.4961 -3.0163 45 1 2.4512 5.8741 -5.1515 46 1 4.2061 5.5497 -5.0173 47 1 5.7200 4.8262 -6.3586 48 1 6.8445 5.7637 -8.3612 49 1 4.8701 3.0194 -5.8410 50 1 3.4409 2.0796 -6.3731 51 1 2.1490 1.1288 -5.0394 52 1 1.2301 2.3493 -4.1151 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001064608394.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 07:30:04 Heat of formation + Delta-G solvation = 11.110449 kcal Electronic energy + Delta-G solvation = -35299.716704 eV Core-core repulsion = 30879.473518 eV Total energy + Delta-G solvation = -4420.243187 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 372.195 amu Computer time = 26.98 seconds Orbital eigenvalues (eV) -42.65103 -41.45990 -40.14722 -38.10836 -37.57794 -37.40033 -34.99492 -33.88360 -32.29063 -31.56702 -30.47874 -30.11878 -28.12712 -28.00448 -27.17656 -26.77450 -25.45017 -24.52285 -23.42922 -22.91671 -20.80731 -20.59326 -20.24515 -19.12815 -18.81489 -17.70462 -17.34835 -17.07417 -16.64748 -16.60385 -16.35312 -15.97135 -15.46881 -15.41196 -15.26684 -15.14374 -14.66718 -14.60602 -14.54897 -14.34816 -14.27772 -14.27255 -13.95081 -13.68612 -13.56150 -13.39714 -13.15021 -13.04990 -12.72373 -12.64405 -12.49446 -12.38621 -12.37233 -12.22551 -11.96069 -11.89212 -11.73148 -11.65858 -11.59288 -11.43993 -11.26064 -11.12461 -10.88107 -10.77575 -10.67525 -10.57339 -9.67906 -9.21388 -7.96733 -7.41749 -0.85453 -0.16307 1.08064 1.38378 1.44545 1.45132 1.63701 1.72880 2.01043 2.38868 2.46922 2.62217 2.90666 3.27827 3.38072 3.47498 3.54436 3.65130 3.78899 4.07841 4.10188 4.21509 4.25484 4.29238 4.31545 4.36074 4.39722 4.48139 4.54034 4.65149 4.72079 4.74823 4.79176 4.86980 4.88703 4.95385 4.96072 5.02759 5.06832 5.07994 5.09231 5.13204 5.16926 5.26109 5.31025 5.36703 5.45720 5.52651 5.57536 5.64933 5.67950 5.78105 5.85697 5.94948 6.07212 6.11235 6.72938 6.97883 7.47444 7.99309 Molecular weight = 372.19amu Principal moments of inertia in cm(-1) A = 0.019735 B = 0.002221 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.492288 B =12602.148485 C =13027.849240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.087 4.087 3 C -0.113 4.113 4 C -0.118 4.118 5 C -0.005 4.005 6 O -0.860 6.860 7 Si 0.950 3.050 8 H -0.290 1.290 9 H -0.327 1.327 10 H -0.276 1.276 11 C 0.505 3.495 12 O -0.625 6.625 13 N -0.600 5.600 14 C 0.072 3.928 15 C -0.111 4.111 16 C -0.061 4.061 17 C -0.102 4.102 18 C 0.051 3.949 19 N -0.502 5.502 20 C 0.344 3.656 21 C -0.208 4.208 22 C 0.174 3.826 23 N -0.499 5.499 24 C 0.394 3.606 25 C 0.300 3.700 26 N -0.393 5.393 27 N -0.501 5.501 28 C 0.066 3.934 29 C 0.116 3.884 30 H 0.036 0.964 31 H 0.075 0.925 32 H 0.038 0.962 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.038 0.962 36 H 0.029 0.971 37 H 0.051 0.949 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.114 0.886 41 H 0.066 0.934 42 H 0.121 0.879 43 H 0.062 0.938 44 H 0.109 0.891 45 H 0.087 0.913 46 H 0.091 0.909 47 H 0.198 0.802 48 H 0.231 0.769 49 H 0.097 0.903 50 H 0.069 0.931 51 H 0.034 0.966 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.207 18.047 -3.261 21.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.088 4.088 3 C -0.170 4.170 4 C -0.175 4.175 5 C -0.107 4.107 6 O -0.807 6.807 7 Si 0.784 3.216 8 H -0.218 1.218 9 H -0.257 1.257 10 H -0.202 1.202 11 C 0.298 3.702 12 O -0.511 6.511 13 N -0.331 5.331 14 C -0.049 4.049 15 C -0.149 4.149 16 C -0.063 4.063 17 C -0.140 4.140 18 C -0.074 4.074 19 N -0.225 5.225 20 C 0.106 3.894 21 C -0.233 4.233 22 C 0.010 3.990 23 N -0.215 5.215 24 C 0.124 3.876 25 C -0.019 4.019 26 N -0.071 5.071 27 N -0.219 5.219 28 C -0.060 4.060 29 C -0.007 4.007 30 H 0.055 0.945 31 H 0.094 0.906 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.057 0.943 36 H 0.048 0.952 37 H 0.070 0.930 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.131 0.869 41 H 0.085 0.915 42 H 0.139 0.861 43 H 0.081 0.919 44 H 0.127 0.873 45 H 0.106 0.894 46 H 0.110 0.890 47 H 0.215 0.785 48 H 0.247 0.753 49 H 0.115 0.885 50 H 0.088 0.912 51 H 0.052 0.948 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 8.632 17.404 -5.949 20.317 hybrid contribution 0.487 -0.793 0.602 1.109 sum 9.119 16.610 -5.347 19.689 Atomic orbital electron populations 1.22006 0.96343 1.00687 1.01313 1.21000 0.93387 0.97571 0.96863 1.21872 1.01497 0.93784 0.99838 1.21597 1.01336 0.98407 0.96171 1.24070 1.00404 0.97019 0.89218 1.94702 1.03787 1.89854 1.92384 0.86151 0.74897 0.85193 0.75360 1.21830 1.25667 1.20177 1.23238 0.80686 0.78031 0.88224 1.90383 1.27263 1.69884 1.63611 1.48434 1.27172 1.33854 1.23647 1.23549 0.85229 1.00555 0.95573 1.22915 0.96021 1.00513 0.95452 1.21317 0.94615 0.95392 0.94927 1.22311 1.02806 0.91040 0.97844 1.23408 1.03337 0.94432 0.86209 1.62073 1.51571 1.05409 1.03497 1.20199 0.89106 0.90340 0.89787 1.24073 0.95778 0.99471 1.04008 1.23999 1.02085 0.88156 0.84789 1.68304 1.05426 1.17164 1.30629 1.16888 0.87015 0.96277 0.87420 1.24180 0.92451 0.93857 0.91455 1.81261 1.08027 1.07132 1.10690 1.67761 1.41790 1.12367 0.99959 1.23140 0.98826 0.90559 0.93511 1.21957 0.98326 0.93171 0.87245 0.94465 0.90565 0.94345 0.92489 0.91823 0.94331 0.95202 0.93021 0.91280 0.91284 0.86911 0.91480 0.86085 0.91897 0.87295 0.89434 0.89048 0.78510 0.75306 0.88534 0.91239 0.94756 0.93315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.08 7.67 71.98 0.55 -5.53 16 2 C -0.09 -3.87 0.38 -52.18 -0.02 -3.89 16 3 C -0.11 -4.30 6.28 71.98 0.45 -3.85 16 4 C -0.12 -4.86 7.89 71.98 0.57 -4.29 16 5 C 0.00 -0.24 0.20 29.85 0.01 -0.24 16 6 O -0.86 -50.67 12.75 -148.98 -1.90 -52.57 16 7 Si 0.95 51.93 22.23 68.60 1.53 53.46 16 8 H -0.29 -15.43 6.27 99.48 0.62 -14.81 16 9 H -0.33 -19.45 7.11 99.48 0.71 -18.75 16 10 H -0.28 -14.23 6.40 99.48 0.64 -13.59 16 11 C 0.51 26.79 4.87 87.65 0.43 27.21 16 12 O -0.62 -36.18 15.01 -3.02 -0.05 -36.23 16 13 N -0.60 -26.17 2.75 -812.27 -2.23 -28.40 16 14 C 0.07 2.58 4.47 86.99 0.39 2.97 16 15 C -0.11 -2.59 5.84 31.71 0.19 -2.41 16 16 C -0.06 -1.39 0.79 -51.80 -0.04 -1.43 16 17 C -0.10 -1.73 6.23 31.18 0.19 -1.53 16 18 C 0.05 0.67 6.39 86.54 0.55 1.22 16 19 N -0.50 -9.44 5.46 -688.01 -3.76 -13.20 16 20 C 0.34 5.81 5.93 133.27 0.79 6.60 16 21 C -0.21 -1.57 8.12 22.66 0.18 -1.39 16 22 C 0.17 1.18 11.29 84.62 0.95 2.14 16 23 N -0.50 -7.62 10.32 -194.08 -2.00 -9.62 16 24 C 0.39 8.03 7.40 136.11 1.01 9.03 16 25 C 0.30 7.04 15.74 88.33 1.39 8.43 16 26 N -0.39 -10.37 18.54 19.00 0.35 -10.01 16 27 N -0.50 -11.27 10.36 -191.37 -1.98 -13.25 16 28 C 0.07 1.24 5.50 85.97 0.47 1.71 16 29 C 0.12 4.16 6.11 86.24 0.53 4.68 16 30 H 0.04 1.63 7.14 -2.39 -0.02 1.61 16 31 H 0.08 2.55 8.14 -2.38 -0.02 2.53 16 32 H 0.04 1.67 5.08 -2.39 -0.01 1.66 16 33 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.06 2.49 5.96 -2.39 -0.01 2.48 16 35 H 0.04 1.49 5.59 -2.39 -0.01 1.48 16 36 H 0.03 1.26 5.77 -2.38 -0.01 1.24 16 37 H 0.05 2.28 7.58 -2.39 -0.02 2.26 16 38 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.07 2.25 5.36 -2.38 -0.01 2.23 16 40 H 0.11 5.19 4.89 -2.41 -0.01 5.18 16 41 H 0.07 1.67 8.06 -2.39 -0.02 1.65 16 42 H 0.12 1.75 7.70 -2.39 -0.02 1.73 16 43 H 0.06 1.34 7.32 -2.39 -0.02 1.32 16 44 H 0.11 1.32 7.49 -2.39 -0.02 1.30 16 45 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.09 0.55 6.79 -2.38 -0.02 0.53 16 47 H 0.20 0.00 6.91 -2.91 -0.02 -0.02 16 48 H 0.23 -0.67 8.06 -2.91 -0.02 -0.69 16 49 H 0.10 1.13 6.32 -2.39 -0.02 1.11 16 50 H 0.07 1.66 7.41 -2.39 -0.02 1.65 16 51 H 0.03 1.36 7.40 -2.39 -0.02 1.34 16 52 H 0.05 1.83 7.37 -2.39 -0.02 1.81 16 Total: -1.00 -80.03 389.07 0.12 -79.91 By element: Atomic # 1 Polarization: -11.09 SS G_CDS: 1.58 Total: -9.52 kcal Atomic # 6 Polarization: 30.84 SS G_CDS: 8.59 Total: 39.43 kcal Atomic # 7 Polarization: -64.87 SS G_CDS: -9.63 Total: -74.49 kcal Atomic # 8 Polarization: -86.85 SS G_CDS: -1.95 Total: -88.80 kcal Atomic # 14 Polarization: 51.93 SS G_CDS: 1.53 Total: 53.46 kcal Total: -80.03 0.12 -79.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001064608394.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.022 kcal (2) G-P(sol) polarization free energy of solvation -80.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 26.98 seconds