Wall clock time and date at job start Thu Mar 26 2020 07:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38276 * 119.97351 * 2 1 4 4 C 1.38172 * 120.02411 * 179.97438 * 3 2 1 5 5 C 1.38482 * 119.97611 * 0.02562 * 4 3 2 6 6 F 1.35100 * 120.02463 * 180.02562 * 5 4 3 7 7 C 1.38437 * 119.94618 * 359.71239 * 5 4 3 8 8 C 1.38215 * 119.97684 * 179.97438 * 2 1 3 9 9 C 1.50701 * 119.98905 * 0.02562 * 8 2 1 10 10 O 1.42897 * 109.47049 * 58.52674 * 9 8 2 11 11 Si 1.86295 * 109.47539 * 178.53016 * 9 8 2 12 12 H 1.48498 * 109.47386 * 175.37465 * 11 9 8 13 13 H 1.48499 * 109.47142 * 295.37214 * 11 9 8 14 14 H 1.48499 * 109.47281 * 55.37467 * 11 9 8 15 15 C 1.50702 * 109.46666 * 298.53039 * 9 8 2 16 16 O 1.21280 * 119.99950 * 125.00238 * 15 9 8 17 17 N 1.34772 * 120.00214 * 304.99613 * 15 9 8 18 18 C 1.46498 * 120.00260 * 179.97438 * 17 15 9 19 19 C 1.53002 * 109.47051 * 179.97438 * 18 17 15 20 20 C 1.53008 * 109.46945 * 180.02562 * 19 18 17 21 21 N 1.46503 * 109.46998 * 180.02562 * 20 19 18 22 22 C 1.46498 * 119.99769 * 269.99978 * 21 20 19 23 23 C 1.39003 * 119.99779 * 90.00066 * 21 20 19 24 24 C 1.39138 * 119.70461 * 184.99725 * 23 21 20 25 25 C 1.38292 * 119.09803 * 179.97438 * 24 23 21 26 26 C 1.38890 * 118.50487 * 0.02562 * 25 24 23 27 27 C 1.38020 * 119.32822 * 0.27744 * 26 25 24 28 28 N 1.31971 * 120.85789 * 359.44183 * 27 26 25 29 29 H 1.09001 * 109.47439 * 273.55314 * 1 2 3 30 30 H 1.09007 * 109.47398 * 33.55228 * 1 2 3 31 31 H 1.09003 * 109.47329 * 153.55261 * 1 2 3 32 32 H 1.08000 * 119.98499 * 359.97438 * 3 2 1 33 33 H 1.08006 * 120.01183 * 180.02562 * 4 3 2 34 34 H 1.08010 * 120.01217 * 180.29598 * 7 5 4 35 35 H 0.97006 * 120.00052 * 0.02562 * 17 15 9 36 36 H 1.09002 * 109.46853 * 60.00230 * 18 17 15 37 37 H 1.08993 * 109.47349 * 299.99907 * 18 17 15 38 38 H 1.09002 * 109.46956 * 60.00475 * 19 18 17 39 39 H 1.09000 * 109.47483 * 300.00141 * 19 18 17 40 40 H 1.09002 * 109.46959 * 60.00412 * 20 19 18 41 41 H 1.09000 * 109.47092 * 300.00315 * 20 19 18 42 42 H 1.08999 * 109.47350 * 269.99780 * 22 21 20 43 43 H 1.09004 * 109.47425 * 30.00660 * 22 21 20 44 44 H 1.09003 * 109.46752 * 150.00230 * 22 21 20 45 45 H 1.08002 * 120.45041 * 359.97438 * 24 23 21 46 46 H 1.08003 * 120.75108 * 180.02562 * 25 24 23 47 47 H 1.07996 * 120.33293 * 179.97438 * 26 25 24 48 48 H 1.08001 * 119.56697 * 179.70322 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1978 1.1978 0.0000 4 6 3.5795 1.1990 0.0005 5 6 4.2724 0.0001 0.0005 6 9 5.6234 0.0001 0.0016 7 6 3.5797 -1.1985 0.0060 8 6 2.1975 -1.1973 0.0005 9 6 1.4432 -2.5019 0.0005 10 8 0.5963 -2.5625 -1.1488 11 14 2.6524 -3.9184 -0.0437 12 1 1.9151 -5.2025 0.0691 13 1 3.4023 -3.8893 -1.3251 14 1 3.6038 -3.7928 1.0895 15 6 0.6039 -2.5968 1.2486 16 8 -0.5893 -2.7965 1.1631 17 7 1.1791 -2.4598 2.4596 18 6 0.3631 -2.5514 3.6728 19 6 1.2541 -2.3625 4.9022 20 6 0.4018 -2.4589 6.1693 21 7 1.2548 -2.2774 7.3465 22 6 1.8874 -3.4378 7.9785 23 6 1.4639 -1.0042 7.8636 24 6 2.3564 -0.8254 8.9160 25 6 2.5552 0.4467 9.4205 26 6 1.8518 1.5019 8.8539 27 6 0.9773 1.2514 7.8159 28 7 0.8114 0.0275 7.3510 29 1 -0.3634 0.0637 1.0257 30 1 -0.3634 0.8565 -0.5680 31 1 -0.3634 -0.9201 -0.4577 32 1 1.6571 2.1327 -0.0004 33 1 4.1189 2.1348 0.0010 34 1 4.1191 -2.1342 0.0109 35 1 2.1334 -2.2997 2.5280 36 1 -0.1135 -3.5307 3.7170 37 1 -0.4021 -1.7754 3.6555 38 1 1.7310 -1.3833 4.8583 39 1 2.0190 -3.1388 4.9194 40 1 -0.0748 -3.4382 6.2130 41 1 -0.3634 -1.6828 6.1524 42 1 1.2257 -3.8392 8.7461 43 1 2.0773 -4.2030 7.2259 44 1 2.8301 -3.1344 8.4340 45 1 2.8866 -1.6688 9.3332 46 1 3.2419 0.6161 10.2367 47 1 1.9841 2.5074 9.2252 48 1 0.4247 2.0683 7.3757 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153119790.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 07:30:04 Heat of formation + Delta-G solvation = -66.279827 kcal Electronic energy + Delta-G solvation = -32336.209301 eV Core-core repulsion = 27885.083305 eV Total energy + Delta-G solvation = -4451.125997 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 360.164 amu Computer time = 32.12 seconds Orbital eigenvalues (eV) -48.31651 -40.37707 -39.13536 -37.86548 -37.06175 -34.48980 -32.63786 -32.57285 -31.57549 -31.26842 -29.94187 -29.15340 -27.31029 -25.89425 -25.22581 -23.88390 -23.18945 -22.09660 -21.47548 -20.99906 -20.62337 -18.79013 -17.81044 -16.84179 -16.65963 -15.99743 -15.91450 -15.39924 -15.21015 -15.10789 -15.00503 -14.95780 -14.82735 -14.60942 -14.09125 -13.89422 -13.53072 -13.43996 -13.18033 -12.94142 -12.83482 -12.77930 -12.46050 -12.39904 -12.30279 -12.01800 -11.81377 -11.63667 -11.32521 -11.02038 -10.86844 -10.66691 -10.62031 -10.45599 -10.24321 -10.14038 -9.96604 -9.85896 -9.76564 -9.46987 -8.79570 -8.18011 -8.11082 -7.71608 -7.56241 -6.08288 -5.53027 1.15414 1.32555 1.89529 2.00363 2.74696 3.18790 3.28685 3.35046 3.80801 3.87222 4.15340 4.35678 4.38613 4.53738 4.66253 4.82294 4.90820 4.94761 5.00905 5.06948 5.14382 5.18559 5.28847 5.39104 5.41525 5.42749 5.46534 5.53318 5.63337 5.75042 5.85708 5.87104 5.98068 5.99826 6.12826 6.14654 6.29258 6.31956 6.45991 6.46834 6.62947 6.69700 6.73426 6.79441 6.81981 6.87923 7.09031 7.22006 7.38296 7.43976 7.62436 7.93532 8.05965 8.51857 9.39451 9.87386 Molecular weight = 360.16amu Principal moments of inertia in cm(-1) A = 0.009729 B = 0.003056 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2877.443635 B = 9160.422909 C =10184.651262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.060 4.060 3 C -0.103 4.103 4 C -0.174 4.174 5 C 0.082 3.918 6 F -0.153 7.153 7 C -0.178 4.178 8 C -0.027 4.027 9 C 0.026 3.974 10 O -0.794 6.794 11 Si 0.923 3.077 12 H -0.278 1.278 13 H -0.268 1.268 14 H -0.294 1.294 15 C 0.492 3.508 16 O -0.533 6.533 17 N -0.749 5.749 18 C 0.123 3.877 19 C -0.145 4.145 20 C 0.131 3.869 21 N -0.611 5.611 22 C 0.094 3.906 23 C 0.405 3.595 24 C -0.245 4.245 25 C -0.035 4.035 26 C -0.241 4.241 27 C 0.151 3.849 28 N -0.538 5.538 29 H 0.050 0.950 30 H 0.044 0.956 31 H 0.130 0.870 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.391 0.609 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.091 0.909 42 H 0.052 0.948 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.130 0.870 46 H 0.129 0.871 47 H 0.128 0.872 48 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.260 4.889 20.324 21.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.060 4.060 3 C -0.121 4.121 4 C -0.193 4.193 5 C 0.063 3.937 6 F -0.132 7.132 7 C -0.197 4.197 8 C -0.028 4.028 9 C -0.078 4.078 10 O -0.738 6.738 11 Si 0.752 3.248 12 H -0.203 1.203 13 H -0.193 1.193 14 H -0.223 1.223 15 C 0.282 3.718 16 O -0.408 6.408 17 N -0.407 5.407 18 C -0.002 4.002 19 C -0.184 4.184 20 C 0.008 3.992 21 N -0.324 5.324 22 C -0.050 4.050 23 C 0.170 3.830 24 C -0.270 4.270 25 C -0.061 4.061 26 C -0.264 4.264 27 C -0.007 4.007 28 N -0.255 5.255 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.148 0.852 32 H 0.139 0.861 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.224 0.776 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.109 0.891 42 H 0.070 0.930 43 H 0.092 0.908 44 H 0.088 0.912 45 H 0.148 0.852 46 H 0.147 0.853 47 H 0.146 0.854 48 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 4.178 3.694 19.179 19.973 hybrid contribution 1.484 0.567 0.858 1.806 sum 5.662 4.262 20.036 21.253 Atomic orbital electron populations 1.21230 0.90744 1.06301 1.00907 1.19838 0.97139 0.91448 0.97580 1.20889 0.92886 0.97889 1.00473 1.20800 0.94887 0.96101 1.07505 1.17574 0.76062 0.94726 1.05300 1.91413 1.29791 1.97530 1.94428 1.21036 0.95117 0.96435 1.07097 1.21196 0.91582 0.98929 0.91120 1.22586 0.98242 0.93540 0.93395 1.95055 1.58596 1.89581 1.30520 0.86607 0.77087 0.82905 0.78188 1.20344 1.19301 1.22314 1.23557 0.90186 0.73609 0.84482 1.90458 1.16018 1.47599 1.86679 1.46577 1.11501 1.76815 1.05777 1.21034 0.93978 1.01319 0.83837 1.22168 0.99201 1.02853 0.94154 1.21340 0.92589 1.02551 0.82737 1.46394 1.52353 1.02721 1.30916 1.21717 0.97586 0.87497 0.98168 1.18377 0.89493 0.85983 0.89103 1.21425 1.04533 0.98848 1.02178 1.21282 0.95898 0.91938 0.97008 1.21801 1.02859 1.00068 1.01653 1.22445 0.93743 0.92759 0.91796 1.67211 1.26960 0.99420 1.31884 0.93143 0.93706 0.85175 0.86104 0.85970 0.85963 0.77588 0.92447 0.92095 0.91096 0.91755 0.90783 0.89116 0.92982 0.90769 0.91240 0.85210 0.85323 0.85382 0.82898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 8.48 36.00 0.31 -2.86 16 2 C -0.06 -1.36 5.74 -104.62 -0.60 -1.96 16 3 C -0.10 -1.96 9.71 -39.59 -0.38 -2.34 16 4 C -0.17 -3.14 10.03 -39.52 -0.40 -3.54 16 5 C 0.08 1.64 7.30 -39.42 -0.29 1.35 16 6 F -0.15 -2.87 17.27 2.25 0.04 -2.83 16 7 C -0.18 -3.92 8.65 -39.52 -0.34 -4.26 16 8 C -0.03 -0.65 4.45 -104.64 -0.47 -1.12 16 9 C 0.03 0.71 0.40 -29.03 -0.01 0.70 16 10 O -0.79 -26.57 14.93 -55.09 -0.82 -27.39 16 11 Si 0.92 22.65 23.35 -169.99 -3.97 18.68 16 12 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 14 H -0.29 -6.14 6.98 56.52 0.39 -5.75 16 15 C 0.49 12.62 4.34 -10.99 -0.05 12.58 16 16 O -0.53 -15.41 15.82 -14.30 -0.23 -15.63 16 17 N -0.75 -15.25 5.09 -60.30 -0.31 -15.56 16 18 C 0.12 2.06 5.67 -4.04 -0.02 2.04 16 19 C -0.14 -1.91 5.65 -26.73 -0.15 -2.06 16 20 C 0.13 1.51 5.47 -4.04 -0.02 1.49 16 21 N -0.61 -6.59 2.99 -181.71 -0.54 -7.14 16 22 C 0.09 0.70 10.28 59.85 0.62 1.32 16 23 C 0.40 4.83 7.37 -155.02 -1.14 3.69 16 24 C -0.25 -2.40 9.27 -39.23 -0.36 -2.77 16 25 C -0.04 -0.31 10.17 -39.32 -0.40 -0.71 16 26 C -0.24 -2.17 10.10 -39.42 -0.40 -2.57 16 27 C 0.15 1.61 11.17 -17.57 -0.20 1.41 16 28 N -0.54 -6.99 9.08 -12.44 -0.11 -7.10 16 29 H 0.05 1.12 8.13 -51.93 -0.42 0.70 16 30 H 0.04 0.90 8.11 -51.93 -0.42 0.48 16 31 H 0.13 3.70 4.47 -51.93 -0.23 3.47 16 32 H 0.12 1.92 8.06 -52.49 -0.42 1.50 16 33 H 0.12 1.82 8.06 -52.48 -0.42 1.40 16 34 H 0.12 2.60 4.81 -52.48 -0.25 2.35 16 35 H 0.39 7.35 7.70 -40.82 -0.31 7.03 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.07 0.74 8.07 -51.93 -0.42 0.32 16 41 H 0.09 1.16 7.30 -51.93 -0.38 0.78 16 42 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.07 0.51 8.07 -51.93 -0.42 0.09 16 44 H 0.07 0.44 5.98 -51.93 -0.31 0.13 16 45 H 0.13 1.00 6.03 -52.49 -0.32 0.68 16 46 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 47 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 48 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 393.64 15.07 5.93 5.93 Total: -1.00 -35.79 393.64 -10.84 -46.63 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -6.52 Total: 4.02 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: -4.31 Total: 0.39 kcal Atomic # 7 Polarization: -28.84 SS G_CDS: -0.96 Total: -29.80 kcal Atomic # 8 Polarization: -41.97 SS G_CDS: -1.05 Total: -43.02 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.04 Total: -2.83 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -3.97 Total: 18.68 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.79 -10.84 -46.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153119790.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.649 kcal (2) G-P(sol) polarization free energy of solvation -35.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 32.12 seconds