Wall clock time and date at job start Thu Mar 26 2020 07:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38269 * 119.97486 * 2 1 4 4 C 1.38171 * 120.02823 * 180.27373 * 3 2 1 5 5 C 1.38491 * 119.97368 * 359.71990 * 4 3 2 6 6 F 1.35099 * 120.02629 * 179.97438 * 5 4 3 7 7 C 1.38431 * 119.94726 * 0.02562 * 5 4 3 8 8 C 1.38227 * 119.97522 * 179.72240 * 2 1 3 9 9 C 1.50694 * 119.98839 * 0.02562 * 8 2 1 10 10 O 1.42908 * 109.47249 * 310.85319 * 9 8 2 11 11 Si 1.86295 * 109.47417 * 190.85578 * 9 8 2 12 12 H 1.48507 * 109.46665 * 294.34281 * 11 9 8 13 13 H 1.48502 * 109.47214 * 54.33653 * 11 9 8 14 14 H 1.48495 * 109.47445 * 174.34406 * 11 9 8 15 15 C 1.50697 * 109.47262 * 70.85242 * 9 8 2 16 16 O 1.21286 * 120.00150 * 240.00241 * 15 9 8 17 17 N 1.34772 * 119.99983 * 59.99854 * 15 9 8 18 18 C 1.46504 * 120.00190 * 179.97438 * 17 15 9 19 19 C 1.53003 * 109.46985 * 180.02562 * 18 17 15 20 20 C 1.53003 * 109.46614 * 180.02562 * 19 18 17 21 21 N 1.46498 * 109.46826 * 179.97438 * 20 19 18 22 22 C 1.46504 * 119.99889 * 90.00196 * 21 20 19 23 23 C 1.39005 * 120.00180 * 269.99947 * 21 20 19 24 24 C 1.39132 * 119.70485 * 5.00104 * 23 21 20 25 25 C 1.38296 * 119.09880 * 179.97438 * 24 23 21 26 26 C 1.38893 * 118.50395 * 359.97438 * 25 24 23 27 27 C 1.38019 * 119.32697 * 0.02562 * 26 25 24 28 28 N 1.31971 * 120.86013 * 359.72146 * 27 26 25 29 29 H 1.09003 * 109.47409 * 264.56697 * 1 2 3 30 30 H 1.09001 * 109.47397 * 24.56876 * 1 2 3 31 31 H 1.09000 * 109.46797 * 144.56887 * 1 2 3 32 32 H 1.08003 * 119.98582 * 359.97438 * 3 2 1 33 33 H 1.07996 * 120.01711 * 179.70431 * 4 3 2 34 34 H 1.08003 * 120.01543 * 179.97438 * 7 5 4 35 35 H 0.97005 * 120.00174 * 0.02562 * 17 15 9 36 36 H 1.09003 * 109.46780 * 60.00184 * 18 17 15 37 37 H 1.08990 * 109.47209 * 300.00240 * 18 17 15 38 38 H 1.08998 * 109.46902 * 299.99807 * 19 18 17 39 39 H 1.08997 * 109.47338 * 60.00774 * 19 18 17 40 40 H 1.08990 * 109.47282 * 299.99813 * 20 19 18 41 41 H 1.09003 * 109.47417 * 60.00412 * 20 19 18 42 42 H 1.08994 * 109.47442 * 90.00335 * 22 21 20 43 43 H 1.09006 * 109.46941 * 210.00067 * 22 21 20 44 44 H 1.08993 * 109.47011 * 329.99771 * 22 21 20 45 45 H 1.08005 * 120.45507 * 359.97438 * 24 23 21 46 46 H 1.07999 * 120.75149 * 179.97438 * 25 24 23 47 47 H 1.08001 * 120.33189 * 180.02562 * 26 25 24 48 48 H 1.08002 * 119.56720 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1977 0.0000 4 6 3.5795 1.1990 -0.0057 5 6 4.2725 0.0000 -0.0056 6 9 5.6235 0.0000 -0.0117 7 6 3.5798 -1.1985 -0.0003 8 6 2.1976 -1.1974 0.0058 9 6 1.4433 -2.5019 0.0115 10 8 0.4415 -2.4685 1.0301 11 14 2.6256 -3.9015 0.3493 12 1 3.5841 -4.0227 -0.7786 13 1 3.3704 -3.6283 1.6046 14 1 1.8649 -5.1689 0.4908 15 6 0.7889 -2.7097 -1.3299 16 8 -0.4166 -2.8185 -1.4063 17 7 1.5433 -2.7747 -2.4449 18 6 0.9072 -2.9774 -3.7490 19 6 1.9799 -3.0137 -4.8394 20 6 1.3155 -3.2246 -6.2014 21 7 2.3424 -3.2588 -7.2456 22 6 2.9602 -4.5321 -7.6240 23 6 2.7307 -2.0830 -7.8774 24 6 2.2175 -0.8650 -7.4428 25 6 2.6128 0.2971 -8.0801 26 6 3.5119 0.2019 -9.1344 27 6 3.9809 -1.0397 -9.5130 28 7 3.5901 -2.1317 -8.8834 29 1 -0.3634 -0.0973 1.0231 30 1 -0.3634 0.9346 -0.4273 31 1 -0.3633 -0.8374 -0.5958 32 1 1.6571 2.1327 -0.0004 33 1 4.1189 2.1347 -0.0105 34 1 4.1192 -2.1342 -0.0006 35 1 2.5075 -2.6881 -2.3838 36 1 0.2151 -2.1588 -3.9467 37 1 0.3620 -3.9211 -3.7446 38 1 2.5254 -2.0700 -4.8439 39 1 2.6716 -3.8325 -4.6416 40 1 0.7696 -4.1680 -6.1972 41 1 0.6240 -2.4056 -6.3992 42 1 2.3855 -4.9897 -8.4292 43 1 3.9812 -4.3544 -7.9620 44 1 2.9737 -5.1996 -6.7625 45 1 1.5200 -0.8274 -6.6191 46 1 2.2309 1.2569 -7.7650 47 1 3.8408 1.0906 -9.6526 48 1 4.6799 -1.1182 -10.3325 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153119790.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 07:30:31 Heat of formation + Delta-G solvation = -90.529333 kcal Electronic energy + Delta-G solvation = -32315.524403 eV Core-core repulsion = 27863.346869 eV Total energy + Delta-G solvation = -4452.177534 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 360.164 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -49.81705 -41.16882 -40.88850 -39.57431 -38.07506 -35.96612 -34.40672 -33.49078 -33.06789 -32.30671 -31.11029 -31.04206 -28.30972 -27.47582 -26.44032 -25.25561 -24.05250 -23.45234 -22.90780 -22.34761 -21.90967 -20.55863 -18.58043 -18.45056 -17.67243 -17.46971 -16.91326 -16.90204 -16.65442 -16.52511 -16.47273 -16.31398 -15.85321 -15.72117 -15.45756 -15.26647 -14.86002 -14.57472 -14.53524 -14.39244 -14.17264 -13.93996 -13.89354 -13.73603 -13.33900 -13.15525 -12.91822 -12.78759 -12.65738 -12.60954 -12.45701 -12.34632 -12.27081 -12.06626 -11.88085 -11.78426 -11.62364 -10.99660 -10.82625 -10.61767 -10.30942 -9.89775 -9.79319 -9.22240 -8.49338 -8.28609 -7.72045 0.28654 0.39437 0.41534 0.58243 1.19265 1.30565 1.36649 1.94092 1.94623 2.42707 2.63577 2.80350 3.04995 3.35545 3.65149 3.83867 3.86446 3.94642 4.02074 4.10602 4.15730 4.19415 4.26000 4.33840 4.41823 4.42338 4.48859 4.52961 4.55387 4.60543 4.62368 4.71797 4.79205 4.89050 4.92401 4.99322 5.03236 5.04730 5.09249 5.17769 5.18938 5.20000 5.23164 5.40170 5.48289 5.57231 5.72927 5.75840 5.95815 6.02768 6.14442 6.44272 6.70605 7.25357 7.45715 7.89844 Molecular weight = 360.16amu Principal moments of inertia in cm(-1) A = 0.009802 B = 0.003039 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2855.967386 B = 9210.900286 C =10281.531158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.088 4.088 3 C -0.089 4.089 4 C -0.154 4.154 5 C 0.085 3.915 6 F -0.143 7.143 7 C -0.189 4.189 8 C -0.056 4.056 9 C -0.010 4.010 10 O -0.874 6.874 11 Si 0.939 3.061 12 H -0.232 1.232 13 H -0.274 1.274 14 H -0.306 1.306 15 C 0.493 3.507 16 O -0.578 6.578 17 N -0.734 5.734 18 C 0.120 3.880 19 C -0.134 4.134 20 C 0.134 3.866 21 N -0.615 5.615 22 C 0.102 3.898 23 C 0.383 3.617 24 C -0.252 4.252 25 C -0.041 4.041 26 C -0.237 4.237 27 C 0.132 3.868 28 N -0.569 5.569 29 H 0.044 0.956 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.160 0.840 33 H 0.167 0.833 34 H 0.127 0.873 35 H 0.402 0.598 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.098 0.902 41 H 0.085 0.915 42 H 0.050 0.950 43 H 0.065 0.935 44 H 0.077 0.923 45 H 0.136 0.864 46 H 0.152 0.848 47 H 0.155 0.845 48 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.048 6.223 -19.629 22.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C -0.107 4.107 4 C -0.172 4.172 5 C 0.066 3.934 6 F -0.122 7.122 7 C -0.208 4.208 8 C -0.057 4.057 9 C -0.111 4.111 10 O -0.820 6.820 11 Si 0.765 3.235 12 H -0.157 1.157 13 H -0.199 1.199 14 H -0.234 1.234 15 C 0.283 3.717 16 O -0.458 6.458 17 N -0.391 5.391 18 C -0.004 4.004 19 C -0.174 4.174 20 C 0.010 3.990 21 N -0.328 5.328 22 C -0.041 4.041 23 C 0.149 3.851 24 C -0.277 4.277 25 C -0.066 4.066 26 C -0.259 4.259 27 C -0.025 4.025 28 N -0.287 5.287 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.178 0.822 33 H 0.184 0.816 34 H 0.145 0.855 35 H 0.237 0.763 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.116 0.884 41 H 0.104 0.896 42 H 0.069 0.931 43 H 0.084 0.916 44 H 0.095 0.905 45 H 0.153 0.847 46 H 0.169 0.831 47 H 0.173 0.827 48 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 8.853 4.507 -19.488 21.874 hybrid contribution -0.249 0.477 0.850 1.006 sum 8.603 4.984 -18.638 21.124 Atomic orbital electron populations 1.20592 0.91672 1.01051 1.01532 1.20025 0.96818 0.92847 0.99173 1.21201 0.93476 0.97632 0.98349 1.21250 0.94469 0.97160 1.04360 1.17617 0.76467 0.94660 1.04633 1.91445 1.29028 1.97485 1.94262 1.21010 0.94129 0.97813 1.07806 1.20907 0.92422 0.98037 0.94326 1.23091 1.00198 0.96789 0.91047 1.95026 1.49097 1.92171 1.45718 0.86383 0.76513 0.79498 0.81076 1.15683 1.19881 1.23379 1.23294 0.87872 0.73301 0.87233 1.90407 1.16980 1.51023 1.87351 1.46358 1.10784 1.75482 1.06484 1.21241 0.95924 1.01196 0.82015 1.22119 0.98022 1.03468 0.93769 1.21399 0.88956 1.04473 0.84192 1.46447 1.42571 1.04751 1.39053 1.21567 0.98260 0.83868 1.00407 1.18616 0.90387 0.86766 0.89361 1.21673 1.07812 0.92251 1.05950 1.21696 0.93421 0.98580 0.92932 1.22127 1.02694 0.99791 1.01306 1.22882 0.95774 0.87239 0.96625 1.67181 1.16721 1.34242 1.10539 0.93710 0.91244 0.92634 0.82237 0.81559 0.85508 0.76321 0.92408 0.92298 0.91176 0.90490 0.88377 0.89633 0.93122 0.91634 0.90454 0.84656 0.83061 0.82744 0.80706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -4.36 8.46 71.23 0.60 -3.76 16 2 C -0.09 -3.90 5.77 -19.86 -0.11 -4.01 16 3 C -0.09 -2.95 9.68 22.26 0.22 -2.74 16 4 C -0.15 -4.64 10.03 22.31 0.22 -4.42 16 5 C 0.09 2.98 7.30 22.38 0.16 3.14 16 6 F -0.14 -4.65 17.27 44.97 0.78 -3.87 16 7 C -0.19 -7.69 8.64 22.31 0.19 -7.50 16 8 C -0.06 -2.64 4.58 -19.87 -0.09 -2.73 16 9 C -0.01 -0.54 0.40 29.10 0.01 -0.53 16 10 O -0.87 -61.14 15.04 -129.94 -1.95 -63.10 16 11 Si 0.94 45.30 23.09 68.60 1.58 46.89 16 12 H -0.23 -8.64 6.99 99.48 0.69 -7.94 16 13 H -0.27 -13.27 7.11 99.48 0.71 -12.56 16 14 H -0.31 -16.11 7.11 99.48 0.71 -15.40 16 15 C 0.49 25.40 4.79 87.66 0.42 25.82 16 16 O -0.58 -34.37 15.01 15.99 0.24 -34.13 16 17 N -0.73 -28.37 5.08 -463.06 -2.35 -30.72 16 18 C 0.12 3.62 5.67 86.38 0.49 4.11 16 19 C -0.13 -2.93 5.62 30.60 0.17 -2.76 16 20 C 0.13 2.46 5.03 86.38 0.43 2.89 16 21 N -0.62 -12.60 2.99 -728.85 -2.18 -14.78 16 22 C 0.10 1.80 10.42 127.77 1.33 3.13 16 23 C 0.38 8.79 7.37 133.06 0.98 9.77 16 24 C -0.25 -5.24 9.10 22.50 0.20 -5.03 16 25 C -0.04 -0.70 10.17 22.44 0.23 -0.47 16 26 C -0.24 -3.69 10.10 22.37 0.23 -3.47 16 27 C 0.13 2.36 11.17 84.62 0.95 3.30 16 28 N -0.57 -13.17 9.16 -193.26 -1.77 -14.94 16 29 H 0.04 2.34 7.84 -2.39 -0.02 2.32 16 30 H 0.07 2.60 8.05 -2.39 -0.02 2.58 16 31 H 0.05 3.06 4.39 -2.39 -0.01 3.05 16 32 H 0.16 4.06 8.06 -2.91 -0.02 4.04 16 33 H 0.17 3.64 8.06 -2.91 -0.02 3.61 16 34 H 0.13 4.90 4.99 -2.91 -0.01 4.89 16 35 H 0.40 13.83 7.55 -92.70 -0.70 13.13 16 36 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.07 1.60 8.02 -2.39 -0.02 1.58 16 39 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.10 1.55 8.07 -2.39 -0.02 1.53 16 41 H 0.09 1.50 6.38 -2.39 -0.02 1.49 16 42 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.06 1.28 7.45 -2.38 -0.02 1.26 16 44 H 0.08 1.14 8.07 -2.39 -0.02 1.12 16 45 H 0.14 2.64 6.20 -2.91 -0.02 2.62 16 46 H 0.15 1.88 8.06 -2.91 -0.02 1.85 16 47 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 48 H 0.18 2.05 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -83.25 392.99 2.02 -81.22 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: 1.04 Total: 18.67 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: 6.64 Total: 14.75 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: -6.30 Total: -60.44 kcal Atomic # 8 Polarization: -95.51 SS G_CDS: -1.71 Total: -97.23 kcal Atomic # 9 Polarization: -4.65 SS G_CDS: 0.78 Total: -3.87 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.58 Total: 46.89 kcal Total: -83.25 2.02 -81.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153119790.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.307 kcal (2) G-P(sol) polarization free energy of solvation -83.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds