Wall clock time and date at job start Thu Mar 26 2020 07:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34226 * 117.00406 * 2 1 4 4 O 1.20831 * 119.99432 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00398 * 179.97438 * 3 2 1 6 6 H 1.08998 * 109.47096 * 299.99590 * 5 3 2 7 7 N 1.46503 * 109.47049 * 179.97438 * 5 3 2 8 8 C 1.34778 * 120.00395 * 85.00234 * 7 5 3 9 9 O 1.21287 * 119.99186 * 359.97438 * 8 7 5 10 10 C 1.50694 * 120.00401 * 179.97438 * 8 7 5 11 11 O 1.42905 * 109.47134 * 179.97438 * 10 8 7 12 12 Si 1.86298 * 109.46985 * 300.00029 * 10 8 7 13 13 H 1.48496 * 109.47378 * 60.00182 * 12 10 8 14 14 H 1.48511 * 109.46922 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47214 * 299.99617 * 12 10 8 16 16 C 1.50699 * 109.47182 * 59.99911 * 10 8 7 17 17 C 1.38265 * 119.94345 * 274.73132 * 16 10 8 18 18 C 1.38149 * 120.05470 * 179.72779 * 17 16 10 19 19 C 1.38730 * 119.94397 * 0.53973 * 18 17 16 20 20 O 1.35900 * 120.05638 * 179.75579 * 19 18 17 21 21 C 1.38734 * 119.88591 * 359.72562 * 19 18 17 22 22 C 1.38140 * 119.94703 * 0.02562 * 21 19 18 23 23 C 1.50702 * 109.47103 * 59.99976 * 5 3 2 24 24 C 1.38263 * 119.97595 * 79.97733 * 23 5 3 25 25 C 1.38176 * 120.02823 * 180.02562 * 24 23 5 26 26 C 1.38485 * 119.97176 * 359.97438 * 25 24 23 27 27 F 1.35093 * 120.02684 * 180.29646 * 26 25 24 28 28 C 1.38445 * 119.94716 * 0.02601 * 26 25 24 29 29 C 1.50694 * 120.00973 * 179.97438 * 28 26 25 30 30 C 1.38218 * 119.97632 * 359.97438 * 28 26 25 31 31 H 1.09005 * 109.47408 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47489 * 300.00611 * 1 2 3 33 33 H 1.09003 * 109.46847 * 60.00245 * 1 2 3 34 34 H 0.97001 * 120.00051 * 264.99703 * 7 5 3 35 35 H 1.07999 * 119.97475 * 359.97438 * 17 16 10 36 36 H 1.08006 * 120.02737 * 180.27166 * 18 17 16 37 37 H 0.96700 * 113.99566 * 269.97946 * 20 19 18 38 38 H 1.08000 * 120.02633 * 179.97438 * 21 19 18 39 39 H 1.07998 * 119.97531 * 180.02562 * 22 21 19 40 40 H 1.08006 * 119.98991 * 0.02562 * 24 23 5 41 41 H 1.08000 * 120.01900 * 180.02562 * 25 24 23 42 42 H 1.09003 * 109.47584 * 89.99775 * 29 28 26 43 43 H 1.09004 * 109.47177 * 209.99980 * 29 28 26 44 44 H 1.09004 * 109.47536 * 329.99440 * 29 28 26 45 45 H 1.07992 * 119.98884 * 180.02562 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9557 0.7809 0.8908 7 7 3.9817 2.6797 -0.0002 8 6 4.0748 3.3556 1.1622 9 8 3.8142 2.8007 2.2087 10 6 4.5026 4.8005 1.1615 11 8 4.5238 5.2917 2.5033 12 14 6.2057 4.9435 0.4201 13 1 6.1830 4.4334 -0.9743 14 1 6.6275 6.3674 0.4200 15 1 7.1644 4.1439 1.2243 16 6 3.5297 5.6121 0.3454 17 6 3.6892 5.7069 -1.0248 18 6 2.7955 6.4457 -1.7758 19 6 1.7438 7.1018 -1.1528 20 8 0.8662 7.8332 -1.8888 21 6 1.5892 7.0095 0.2228 22 6 2.4826 6.2653 0.9687 23 6 4.1056 0.5914 -1.2295 24 6 4.1052 1.2530 -2.4436 25 6 4.5990 0.6272 -3.5723 26 6 5.0948 -0.6630 -3.4870 27 9 5.5833 -1.2737 -4.5885 28 6 5.0947 -1.3245 -2.2708 29 6 5.6334 -2.7286 -2.1765 30 6 4.6003 -0.6964 -1.1431 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 4.1898 3.1235 -0.8372 35 1 4.5108 5.1999 -1.5088 36 1 2.9179 6.5159 -2.8466 37 1 1.1202 8.7599 -1.9969 38 1 0.7716 7.5197 0.7102 39 1 2.3625 6.1928 2.0395 40 1 3.7188 2.2594 -2.5098 41 1 4.5989 1.1443 -4.5204 42 1 6.6993 -2.6946 -1.9509 43 1 5.1115 -3.2657 -1.3844 44 1 5.4791 -3.2416 -3.1258 45 1 4.6005 -1.2121 -0.1943 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153723770.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 07:42:57 Heat of formation + Delta-G solvation = -236.054071 kcal Electronic energy + Delta-G solvation = -35400.901956 eV Core-core repulsion = 30455.605958 eV Total energy + Delta-G solvation = -4945.295998 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 376.125 amu Computer time = 20.17 seconds Orbital eigenvalues (eV) -49.92682 -42.08881 -40.80409 -40.32876 -39.82829 -37.72399 -37.57045 -36.08608 -33.89975 -33.63106 -32.42775 -31.81863 -30.02834 -29.43968 -28.09898 -27.65195 -25.65639 -23.88492 -23.56504 -23.01935 -22.80805 -21.38763 -20.97032 -19.27204 -18.89169 -18.65788 -18.28248 -18.05724 -17.57802 -17.39844 -16.93490 -16.68451 -16.58972 -16.41843 -16.15446 -15.71880 -15.35111 -15.32378 -14.90805 -14.81218 -14.55653 -14.46435 -14.27832 -14.25553 -14.21390 -14.19424 -13.91736 -13.21534 -13.15873 -13.10201 -13.00248 -12.84569 -12.63508 -12.42273 -12.32483 -12.00050 -11.92903 -11.88753 -11.87553 -11.81115 -11.16838 -11.01231 -10.32243 -9.94833 -9.84628 -9.63528 -9.28908 -8.40200 -7.79799 -0.07876 0.17830 0.36895 0.50909 1.02402 1.20574 1.31342 1.34276 1.49820 1.98325 2.21348 2.49500 2.62127 2.90490 3.14818 3.27049 3.38350 3.60718 3.75767 3.83865 3.96254 4.02728 4.15791 4.17436 4.24222 4.25567 4.27013 4.42257 4.54735 4.60062 4.61275 4.70782 4.76167 4.76659 4.80278 4.91584 5.06484 5.07337 5.17800 5.18879 5.19712 5.24385 5.28150 5.40248 5.47369 5.54054 5.81931 5.94762 6.04118 6.47560 6.60265 6.94632 7.29929 7.82374 Molecular weight = 376.12amu Principal moments of inertia in cm(-1) A = 0.009078 B = 0.003522 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3083.635125 B = 7947.933626 C = 8145.330364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.352 6.352 3 C 0.451 3.549 4 O -0.522 6.522 5 C 0.194 3.806 6 H 0.126 0.874 7 N -0.709 5.709 8 C 0.500 3.500 9 O -0.582 6.582 10 C -0.031 4.031 11 O -0.895 6.895 12 Si 0.964 3.036 13 H -0.206 1.206 14 H -0.272 1.272 15 H -0.297 1.297 16 C -0.091 4.091 17 C -0.138 4.138 18 C -0.129 4.129 19 C 0.087 3.913 20 O -0.501 6.501 21 C -0.152 4.152 22 C -0.101 4.101 23 C -0.106 4.106 24 C -0.094 4.094 25 C -0.137 4.137 26 C 0.094 3.906 27 F -0.138 7.138 28 C -0.114 4.114 29 C -0.114 4.114 30 C -0.064 4.064 31 H 0.143 0.857 32 H 0.048 0.952 33 H 0.063 0.937 34 H 0.409 0.591 35 H 0.149 0.851 36 H 0.166 0.834 37 H 0.407 0.593 38 H 0.132 0.868 39 H 0.084 0.916 40 H 0.137 0.863 41 H 0.163 0.837 42 H 0.084 0.916 43 H 0.089 0.911 44 H 0.074 0.926 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.113 -11.874 -18.408 21.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.267 6.267 3 C 0.292 3.708 4 O -0.410 6.410 5 C 0.087 3.913 6 H 0.143 0.857 7 N -0.368 5.368 8 C 0.291 3.709 9 O -0.460 6.460 10 C -0.131 4.131 11 O -0.841 6.841 12 Si 0.786 3.214 13 H -0.131 1.131 14 H -0.197 1.197 15 H -0.224 1.224 16 C -0.092 4.092 17 C -0.156 4.156 18 C -0.147 4.147 19 C 0.043 3.957 20 O -0.314 6.314 21 C -0.171 4.171 22 C -0.119 4.119 23 C -0.107 4.107 24 C -0.113 4.113 25 C -0.155 4.155 26 C 0.075 3.925 27 F -0.116 7.116 28 C -0.115 4.115 29 C -0.170 4.170 30 C -0.082 4.082 31 H 0.161 0.839 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.248 0.752 35 H 0.166 0.834 36 H 0.183 0.817 37 H 0.265 0.735 38 H 0.149 0.851 39 H 0.102 0.898 40 H 0.155 0.845 41 H 0.181 0.819 42 H 0.102 0.898 43 H 0.107 0.893 44 H 0.093 0.907 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -1.038 -12.313 -17.793 21.663 hybrid contribution -0.556 1.004 0.972 1.504 sum -1.594 -11.309 -16.821 20.331 Atomic orbital electron populations 1.23564 0.74924 1.05949 1.02065 1.86472 1.24816 1.31749 1.83699 1.24506 0.92700 0.81831 0.71747 1.90707 1.67200 1.37628 1.45451 1.19191 0.86367 0.85212 1.00530 0.85693 1.46267 1.70012 1.10332 1.10226 1.23807 0.73449 0.91401 0.82250 1.90405 1.50700 1.70637 1.34280 1.23590 1.02858 0.86782 0.99839 1.94986 1.92727 1.80233 1.16166 0.86058 0.77990 0.79647 0.77702 1.13053 1.19658 1.22408 1.21153 0.96075 0.97504 0.94472 1.21253 1.01007 1.01222 0.92125 1.21546 0.93256 0.98472 1.01421 1.18337 0.91185 0.97597 0.88620 1.84754 1.47460 1.26947 1.72202 1.21510 0.99802 1.01473 0.94305 1.20790 0.94772 0.97133 0.99213 1.19390 1.02829 0.96008 0.92494 1.20953 0.98532 1.00546 0.91235 1.21241 1.00182 0.93590 1.00520 1.17740 0.99520 0.92268 0.82976 1.91481 1.85506 1.82960 1.51677 1.20130 1.01148 0.98946 0.91252 1.20814 1.01998 0.90008 1.04189 1.20925 0.95314 0.92584 0.99395 0.83946 0.93310 0.91834 0.75236 0.83385 0.81666 0.73487 0.85054 0.89769 0.84501 0.81911 0.89755 0.89258 0.90731 0.82737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 10.56 113.37 1.20 1.86 16 2 O -0.35 -10.54 10.48 -51.38 -0.54 -11.08 16 3 C 0.45 16.87 7.27 71.23 0.52 17.38 16 4 O -0.52 -23.69 16.07 21.95 0.35 -23.34 16 5 C 0.19 6.83 2.68 43.50 0.12 6.95 16 6 H 0.13 4.51 7.44 -2.39 -0.02 4.49 16 7 N -0.71 -29.53 4.08 -449.69 -1.83 -31.36 16 8 C 0.50 27.66 5.83 87.65 0.51 28.17 16 9 O -0.58 -37.43 16.16 15.99 0.26 -37.17 16 10 C -0.03 -1.82 0.72 29.10 0.02 -1.80 16 11 O -0.89 -66.87 16.03 -129.94 -2.08 -68.95 16 12 Si 0.96 44.90 24.18 68.60 1.66 46.56 16 13 H -0.21 -6.69 6.35 99.48 0.63 -6.06 16 14 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 15 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 16 C -0.09 -4.61 4.46 -19.85 -0.09 -4.70 16 17 C -0.14 -5.29 7.74 22.26 0.17 -5.12 16 18 C -0.13 -4.15 9.99 22.37 0.22 -3.93 16 19 C 0.09 3.01 6.70 22.51 0.15 3.16 16 20 O -0.50 -13.70 13.50 -92.43 -1.25 -14.94 16 21 C -0.15 -6.33 9.99 22.37 0.22 -6.11 16 22 C -0.10 -5.27 9.34 22.25 0.21 -5.06 16 23 C -0.11 -2.76 4.88 -19.86 -0.10 -2.86 16 24 C -0.09 -2.16 9.05 22.26 0.20 -1.96 16 25 C -0.14 -2.59 10.03 22.31 0.22 -2.36 16 26 C 0.09 1.84 7.24 22.38 0.16 2.01 16 27 F -0.14 -2.69 16.48 44.97 0.74 -1.95 16 28 C -0.11 -2.11 5.89 -19.82 -0.12 -2.23 16 29 C -0.11 -1.49 9.83 71.23 0.70 -0.79 16 30 C -0.06 -1.34 9.32 22.26 0.21 -1.13 16 31 H 0.14 2.04 8.14 -2.38 -0.02 2.02 16 32 H 0.05 1.28 8.13 -2.39 -0.02 1.26 16 33 H 0.06 1.46 8.13 -2.39 -0.02 1.44 16 34 H 0.41 14.55 4.65 -92.71 -0.43 14.12 16 35 H 0.15 4.62 5.12 -2.91 -0.01 4.61 16 36 H 0.17 3.80 8.06 -2.91 -0.02 3.77 16 37 H 0.41 6.60 9.06 -74.06 -0.67 5.93 16 38 H 0.13 4.85 8.06 -2.91 -0.02 4.82 16 39 H 0.08 5.13 7.34 -2.91 -0.02 5.11 16 40 H 0.14 3.03 6.91 -2.91 -0.02 3.01 16 41 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 42 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.09 0.93 8.09 -2.38 -0.02 0.91 16 44 H 0.07 0.92 7.64 -2.38 -0.02 0.90 16 45 H 0.16 2.70 8.03 -2.91 -0.02 2.68 16 Total: -1.00 -97.27 390.10 2.50 -94.76 By element: Atomic # 1 Polarization: 25.32 SS G_CDS: 0.66 Total: 25.98 kcal Atomic # 6 Polarization: 16.95 SS G_CDS: 4.53 Total: 21.48 kcal Atomic # 7 Polarization: -29.53 SS G_CDS: -1.83 Total: -31.36 kcal Atomic # 8 Polarization: -152.22 SS G_CDS: -3.26 Total: -155.48 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.74 Total: -1.95 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.66 Total: 46.56 kcal Total: -97.27 2.50 -94.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153723770.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.289 kcal (2) G-P(sol) polarization free energy of solvation -97.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -236.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 20.17 seconds