Wall clock time and date at job start Thu Mar 26 2020 08:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47314 * 2 1 4 4 N 1.46892 * 109.47269 * 120.00586 * 2 1 3 5 5 C 1.46896 * 111.00017 * 274.99743 * 4 2 1 6 6 C 1.53002 * 109.47282 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47303 * 179.97438 * 6 5 4 8 8 N 1.46506 * 109.47393 * 179.97438 * 7 6 5 9 9 C 1.34770 * 120.00277 * 179.97438 * 8 7 6 10 10 O 1.21279 * 119.99899 * 356.02371 * 9 8 7 11 11 C 1.50693 * 119.99999 * 176.02081 * 9 8 7 12 12 O 1.42902 * 109.47095 * 188.17931 * 11 9 8 13 13 Si 1.86295 * 109.47423 * 308.17767 * 11 9 8 14 14 H 1.48499 * 109.47539 * 179.97438 * 13 11 9 15 15 H 1.48502 * 109.47271 * 300.00397 * 13 11 9 16 16 H 1.48500 * 109.46857 * 60.00178 * 13 11 9 17 17 C 1.53004 * 109.47331 * 68.18074 * 11 9 8 18 18 C 1.52998 * 109.47330 * 179.11309 * 17 11 9 19 19 C 1.53005 * 109.46942 * 59.11509 * 17 11 9 20 20 C 1.53000 * 109.46877 * 299.11515 * 17 11 9 21 21 C 1.50699 * 109.46833 * 240.00599 * 2 1 3 22 22 N 1.30930 * 126.40623 * 104.70936 * 21 2 1 23 23 C 1.35393 * 105.57872 * 179.86084 * 22 21 2 24 24 C 1.47734 * 126.44707 * 180.16727 * 23 22 21 25 25 C 1.35993 * 125.93326 * 180.30592 * 24 23 22 26 26 C 1.40820 * 106.73576 * 180.02562 * 25 24 23 27 27 C 1.34818 * 107.04010 * 0.02562 * 26 25 24 28 28 O 1.34196 * 108.68266 * 359.73340 * 27 26 25 29 29 N 1.31032 * 107.10255 * 0.40745 * 23 22 21 30 30 O 1.21289 * 110.04568 * 359.74607 * 29 23 22 31 31 H 1.09001 * 109.46950 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46462 * 299.99506 * 1 2 3 33 33 H 1.08993 * 109.47202 * 59.99363 * 1 2 3 34 34 H 1.00905 * 111.00423 * 38.95455 * 4 2 1 35 35 H 1.08996 * 109.47285 * 60.00400 * 5 4 2 36 36 H 1.08995 * 109.47195 * 299.99745 * 5 4 2 37 37 H 1.08997 * 109.47409 * 59.99720 * 6 5 4 38 38 H 1.09001 * 109.46947 * 299.99767 * 6 5 4 39 39 H 1.08996 * 109.47231 * 60.00098 * 7 6 5 40 40 H 1.09001 * 109.46973 * 299.99805 * 7 6 5 41 41 H 0.97001 * 119.99125 * 0.02562 * 8 7 6 42 42 H 1.08998 * 109.47171 * 300.00200 * 18 17 11 43 43 H 1.09000 * 109.46840 * 59.99806 * 18 17 11 44 44 H 1.08997 * 109.47410 * 180.02562 * 18 17 11 45 45 H 1.08998 * 109.46574 * 180.02562 * 19 17 11 46 46 H 1.09003 * 109.46723 * 300.00118 * 19 17 11 47 47 H 1.08998 * 109.47187 * 60.00028 * 19 17 11 48 48 H 1.08996 * 109.47228 * 307.61916 * 20 17 11 49 49 H 1.08997 * 109.47242 * 67.61929 * 20 17 11 50 50 H 1.09000 * 109.46927 * 187.61939 * 20 17 11 51 51 H 1.07994 * 126.63379 * 0.02562 * 25 24 23 52 52 H 1.07999 * 126.48198 * 179.97438 * 26 25 24 53 53 H 1.07997 * 125.65592 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 2.0826 0.2224 2.3468 6 6 2.5964 -0.5332 3.5740 7 6 2.6625 0.4199 4.7690 8 7 3.1539 -0.3037 5.9443 9 6 3.2955 0.3386 7.1206 10 8 3.0853 1.5311 7.1895 11 6 3.7148 -0.4249 8.3503 12 8 3.6109 0.4230 9.4959 13 14 2.6054 -1.9051 8.5707 14 1 3.0191 -2.6579 9.7821 15 1 1.1998 -1.4517 8.7250 16 1 2.7134 -2.7862 7.3802 17 6 5.1631 -0.8921 8.1913 18 6 5.5960 -1.6482 9.4489 19 6 6.0714 0.3223 7.9884 20 6 5.2700 -1.8175 6.9776 21 6 2.0323 -0.7103 -1.2305 22 7 2.5436 -0.1492 -2.2974 23 6 2.8530 -1.1695 -3.1319 24 6 3.4627 -1.0527 -4.4725 25 6 3.7639 -2.0851 -5.3049 26 6 4.3252 -1.5194 -6.4659 27 6 4.3396 -0.1832 -6.2870 28 8 3.8129 0.0953 -5.0845 29 7 2.5050 -2.2796 -2.5290 30 8 2.0337 -2.0308 -1.4394 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3632 0.5138 0.8901 33 1 -0.3633 0.5139 -0.8899 34 1 1.4496 -1.4981 1.4099 35 1 1.0872 0.6161 2.5526 36 1 2.7590 1.0459 2.1182 37 1 3.5918 -0.9266 3.3681 38 1 1.9203 -1.3570 3.8028 39 1 1.6672 0.8137 4.9752 40 1 3.3388 1.2435 4.5399 41 1 3.3780 -1.2449 5.8755 42 1 5.5198 -0.9890 10.3136 43 1 4.9489 -2.5133 9.5935 44 1 6.6279 -1.9807 9.3359 45 1 7.1030 -0.0106 7.8747 46 1 5.7629 0.8610 7.0923 47 1 5.9951 0.9816 8.8530 48 1 4.5263 -2.6102 7.0584 49 1 5.0931 -1.2448 6.0673 50 1 6.2670 -2.2569 6.9425 51 1 3.6037 -3.1356 -5.1127 52 1 4.6783 -2.0547 -7.3349 53 1 4.7089 0.5429 -6.9961 RHF calculation, no. of doubly occupied orbitals= 72 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155912674.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 08:47:59 Heat of formation + Delta-G solvation = -36.552108 kcal Electronic energy + Delta-G solvation = -34382.930295 eV Core-core repulsion = 29645.134113 eV Total energy + Delta-G solvation = -4737.796182 eV No. of doubly occupied orbitals = 72 Molecular weight (most abundant/longest-lived isotopes) = 379.199 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -46.75863 -43.66930 -40.66903 -38.80618 -37.54950 -37.11042 -36.24968 -34.55550 -33.91767 -32.52144 -31.84887 -30.62726 -30.06365 -28.05264 -28.02093 -26.66423 -25.78105 -25.76626 -24.42933 -23.31932 -22.59585 -22.47055 -21.40631 -21.24144 -19.60616 -19.38706 -19.24117 -18.03852 -17.43746 -17.19834 -17.17932 -16.88782 -16.61978 -16.29948 -16.17246 -15.85369 -15.47839 -15.23926 -14.98275 -14.62530 -14.22500 -14.19228 -14.08808 -13.98410 -13.87282 -13.76177 -13.60577 -13.50174 -13.35922 -13.18551 -13.16064 -12.87255 -12.67284 -12.55515 -12.51154 -12.41708 -12.33769 -12.29202 -11.93778 -11.81941 -11.65865 -11.53991 -11.46285 -11.29884 -11.04059 -10.98819 -10.46465 -9.76258 -9.62133 -9.54654 -8.06790 -7.55170 -0.39225 0.30362 1.23707 1.30221 1.37432 1.43261 1.48892 1.64022 1.69364 2.10094 2.21085 2.59347 2.76605 3.06902 3.27450 3.61388 3.81977 3.86729 3.96592 4.06070 4.13085 4.15071 4.25121 4.26580 4.28574 4.31224 4.36596 4.49389 4.57223 4.68336 4.70345 4.77057 4.77862 4.79872 4.84844 4.85915 4.87783 4.90343 4.91523 4.99818 5.05535 5.15329 5.20488 5.22389 5.24944 5.28370 5.36594 5.37569 5.60650 5.72627 5.73848 5.83387 5.89512 5.89812 6.30336 6.85425 6.90241 7.63478 8.12392 Molecular weight = 379.20amu Principal moments of inertia in cm(-1) A = 0.016175 B = 0.001457 C = 0.001421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.641981 B =19211.603774 C =19700.556977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.181 3.819 3 H 0.132 0.868 4 N -0.688 5.688 5 C 0.070 3.930 6 C -0.117 4.117 7 C 0.113 3.887 8 N -0.737 5.737 9 C 0.484 3.516 10 O -0.599 6.599 11 C -0.032 4.032 12 O -0.904 6.904 13 Si 0.930 3.070 14 H -0.275 1.275 15 H -0.321 1.321 16 H -0.215 1.215 17 C -0.091 4.091 18 C -0.124 4.124 19 C -0.103 4.103 20 C -0.160 4.160 21 C 0.222 3.778 22 N -0.496 5.496 23 C 0.231 3.769 24 C 0.004 3.996 25 C -0.143 4.143 26 C -0.222 4.222 27 C 0.000 4.000 28 O -0.177 6.177 29 N -0.377 5.377 30 O 0.097 5.903 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.363 0.637 35 H 0.058 0.942 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.049 0.951 40 H 0.049 0.951 41 H 0.407 0.593 42 H 0.025 0.975 43 H 0.048 0.952 44 H 0.075 0.925 45 H 0.068 0.932 46 H 0.024 0.976 47 H 0.016 0.984 48 H 0.066 0.934 49 H 0.067 0.933 50 H 0.082 0.918 51 H 0.164 0.836 52 H 0.189 0.811 53 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.552 -8.707 -34.245 35.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.068 3.932 3 H 0.149 0.851 4 N -0.322 5.322 5 C -0.058 4.058 6 C -0.155 4.155 7 C -0.012 4.012 8 N -0.397 5.397 9 C 0.275 3.725 10 O -0.479 6.479 11 C -0.134 4.134 12 O -0.851 6.851 13 Si 0.758 3.242 14 H -0.201 1.201 15 H -0.250 1.250 16 H -0.140 1.140 17 C -0.092 4.092 18 C -0.181 4.181 19 C -0.161 4.161 20 C -0.217 4.217 21 C 0.000 4.000 22 N -0.229 5.229 23 C -0.038 4.038 24 C -0.047 4.047 25 C -0.165 4.165 26 C -0.241 4.241 27 C -0.069 4.069 28 O -0.072 6.072 29 N -0.084 5.084 30 O 0.035 5.965 31 H 0.096 0.904 32 H 0.114 0.886 33 H 0.091 0.909 34 H 0.184 0.816 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.247 0.753 42 H 0.044 0.956 43 H 0.067 0.933 44 H 0.094 0.906 45 H 0.087 0.913 46 H 0.043 0.957 47 H 0.035 0.965 48 H 0.085 0.915 49 H 0.086 0.914 50 H 0.101 0.899 51 H 0.182 0.818 52 H 0.206 0.794 53 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -1.375 -8.482 -34.469 35.523 hybrid contribution -0.887 0.569 0.852 1.355 sum -2.263 -7.913 -33.617 34.610 Atomic orbital electron populations 1.22531 0.91708 1.04611 1.04959 1.20147 0.95076 0.96408 0.81535 0.85051 1.60186 1.58201 1.10695 1.03091 1.21831 1.01241 0.94812 0.87944 1.21640 1.03895 0.98125 0.91811 1.21285 0.98587 0.95764 0.85538 1.46789 1.68868 1.14654 1.09425 1.23930 0.74266 0.88616 0.85714 1.90384 1.52614 1.18557 1.86328 1.24424 0.96840 1.01425 0.90665 1.94944 1.92694 1.62249 1.35184 0.86677 0.78016 0.78554 0.80950 1.20077 1.25041 1.14043 1.21047 0.96903 0.95278 0.95959 1.21665 1.00637 0.98495 0.97305 1.21437 0.98351 0.97444 0.98826 1.22291 1.03447 0.98965 0.96987 1.29272 0.93134 0.80450 0.97106 1.72116 1.18036 1.30156 1.02628 1.22500 1.01257 0.84825 0.95196 1.18195 1.09938 0.85429 0.91148 1.22160 1.00653 0.99843 0.93827 1.22224 1.06687 0.94353 1.00792 1.25357 0.97892 0.98957 0.84661 1.84102 1.61829 1.32392 1.28876 1.74962 1.16381 1.21873 0.95178 1.85270 1.57822 1.27370 1.26029 0.90399 0.88603 0.90922 0.81636 0.92407 0.90228 0.89845 0.89630 0.93295 0.93246 0.75303 0.95598 0.93334 0.90614 0.91317 0.95665 0.96486 0.91493 0.91448 0.89948 0.81833 0.79371 0.72863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.45 9.14 71.98 0.66 -0.79 16 2 C 0.18 2.24 3.13 44.17 0.14 2.38 16 3 H 0.13 1.57 7.80 -2.39 -0.02 1.55 16 4 N -0.69 -8.68 6.23 -495.48 -3.09 -11.77 16 5 C 0.07 0.99 5.48 86.30 0.47 1.46 16 6 C -0.12 -2.16 5.59 30.59 0.17 -1.99 16 7 C 0.11 3.40 5.68 86.38 0.49 3.89 16 8 N -0.74 -28.27 3.95 -463.08 -1.83 -30.10 16 9 C 0.48 25.95 4.64 87.66 0.41 26.36 16 10 O -0.60 -38.24 16.52 15.88 0.26 -37.98 16 11 C -0.03 -1.80 0.30 29.85 0.01 -1.79 16 12 O -0.90 -66.87 15.87 -130.07 -2.06 -68.93 16 13 Si 0.93 44.28 22.29 68.60 1.53 45.81 16 14 H -0.27 -13.13 6.37 99.48 0.63 -12.50 16 15 H -0.32 -17.10 7.11 99.48 0.71 -16.39 16 16 H -0.22 -7.38 6.01 99.48 0.60 -6.78 16 17 C -0.09 -4.15 0.37 -52.18 -0.02 -4.17 16 18 C -0.12 -5.36 7.85 71.98 0.57 -4.79 16 19 C -0.10 -4.84 8.07 71.98 0.58 -4.26 16 20 C -0.16 -5.24 6.81 71.98 0.49 -4.75 16 21 C 0.22 4.18 7.33 88.35 0.65 4.83 16 22 N -0.50 -11.91 11.58 -302.27 -3.50 -15.41 16 23 C 0.23 5.68 8.06 136.96 1.10 6.79 16 24 C 0.00 0.08 7.26 24.26 0.18 0.26 16 25 C -0.14 -2.35 10.82 22.38 0.24 -2.11 16 26 C -0.22 -2.29 10.89 22.12 0.24 -2.05 16 27 C 0.00 0.00 12.08 67.03 0.81 0.81 16 28 O -0.18 -3.48 10.67 -5.65 -0.06 -3.54 16 29 N -0.38 -8.92 12.18 -58.79 -0.72 -9.64 16 30 O 0.10 1.99 11.29 74.39 0.84 2.83 16 31 H 0.08 0.55 8.13 -2.39 -0.02 0.53 16 32 H 0.10 0.59 7.45 -2.38 -0.02 0.57 16 33 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.36 3.52 8.47 -89.69 -0.76 2.76 16 35 H 0.06 0.68 7.44 -2.39 -0.02 0.66 16 36 H 0.08 1.20 8.05 -2.39 -0.02 1.18 16 37 H 0.08 1.53 8.14 -2.39 -0.02 1.52 16 38 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.41 13.10 4.69 -92.71 -0.44 12.66 16 42 H 0.02 1.29 7.66 -2.39 -0.02 1.27 16 43 H 0.05 1.98 5.59 -2.39 -0.01 1.97 16 44 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 45 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 46 H 0.02 1.19 7.19 -2.39 -0.02 1.17 16 47 H 0.02 0.90 7.71 -2.39 -0.02 0.88 16 48 H 0.07 1.99 4.94 -2.39 -0.01 1.98 16 49 H 0.07 2.10 5.77 -2.39 -0.01 2.08 16 50 H 0.08 2.17 8.13 -2.39 -0.02 2.15 16 51 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 52 H 0.19 0.69 8.06 -2.91 -0.02 0.66 16 53 H 0.26 -0.02 8.06 -2.91 -0.02 -0.05 16 Total: -1.00 -97.18 423.77 -1.11 -98.29 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: 0.33 Total: 10.38 kcal Atomic # 6 Polarization: 12.89 SS G_CDS: 7.18 Total: 20.07 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: -9.13 Total: -66.92 kcal Atomic # 8 Polarization: -106.61 SS G_CDS: -1.02 Total: -107.63 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.53 Total: 45.81 kcal Total: -97.18 -1.11 -98.29 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155912674.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.734 kcal (2) G-P(sol) polarization free energy of solvation -97.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds