Wall clock time and date at job start Thu Mar 26 2020 03:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47138 * 2 1 4 4 C 1.53004 * 109.47502 * 239.99956 * 2 1 3 5 5 C 1.53006 * 109.47206 * 119.99921 * 2 1 3 6 6 O 1.42895 * 109.47086 * 180.42893 * 5 2 1 7 7 Si 1.86299 * 109.47059 * 300.42939 * 5 2 1 8 8 H 1.48501 * 109.47032 * 186.08152 * 7 5 2 9 9 H 1.48507 * 109.47104 * 306.07350 * 7 5 2 10 10 H 1.48496 * 109.47542 * 66.07444 * 7 5 2 11 11 C 1.50703 * 109.46908 * 60.42610 * 5 2 1 12 12 O 1.21277 * 119.99983 * 2.27319 * 11 5 2 13 13 N 1.34775 * 119.99524 * 182.27457 * 11 5 2 14 14 C 1.47082 * 120.86429 * 355.01078 * 13 11 5 15 15 C 1.53237 * 108.52147 * 231.12250 * 14 13 11 16 16 N 1.46906 * 109.35992 * 306.21045 * 15 14 13 17 17 C 1.46896 * 110.99744 * 187.23743 * 16 15 14 18 18 C 1.53003 * 109.46994 * 170.00016 * 17 16 15 19 19 C 1.52998 * 109.47519 * 180.02562 * 18 17 16 20 20 H 1.09003 * 115.54746 * 29.32616 * 19 18 17 21 21 C 1.53003 * 117.49937 * 243.62496 * 19 18 17 22 22 C 1.52991 * 117.50140 * 175.00060 * 19 18 17 23 23 Cl 1.80303 * 117.50186 * 214.97832 * 22 19 18 24 24 Cl 1.80306 * 117.50103 * 359.97438 * 22 19 18 25 25 C 1.46900 * 111.26696 * 63.09212 * 16 15 14 26 26 C 1.47078 * 120.87745 * 174.99406 * 13 11 5 27 27 H 1.08999 * 109.47099 * 301.40851 * 1 2 3 28 28 H 1.08997 * 109.47190 * 61.40877 * 1 2 3 29 29 H 1.09005 * 109.46920 * 181.41106 * 1 2 3 30 30 H 1.09001 * 109.47735 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.47417 * 300.00052 * 3 2 1 32 32 H 1.09007 * 109.47049 * 60.00240 * 3 2 1 33 33 H 1.08996 * 109.46616 * 300.00212 * 4 2 1 34 34 H 1.09002 * 109.46443 * 59.99695 * 4 2 1 35 35 H 1.08993 * 109.46995 * 179.97438 * 4 2 1 36 36 H 1.09005 * 109.60592 * 111.42217 * 14 13 11 37 37 H 1.08998 * 109.65643 * 350.84769 * 14 13 11 38 38 H 1.09002 * 109.49613 * 186.24055 * 15 14 13 39 39 H 1.08997 * 109.49719 * 66.18369 * 15 14 13 40 40 H 1.08992 * 109.47435 * 290.00023 * 17 16 15 41 41 H 1.08999 * 109.47494 * 50.00386 * 17 16 15 42 42 H 1.09000 * 109.47299 * 300.00415 * 18 17 16 43 43 H 1.08998 * 109.47058 * 60.00287 * 18 17 16 44 44 H 1.08993 * 117.49866 * 359.97438 * 21 19 18 45 45 H 1.08997 * 117.49589 * 145.01794 * 21 19 18 46 46 H 1.09002 * 109.49503 * 56.85316 * 25 16 15 47 47 H 1.09002 * 109.48952 * 176.90917 * 25 16 15 48 48 H 1.09001 * 109.63074 * 9.14490 * 26 13 11 49 49 H 1.08998 * 109.62554 * 248.56329 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2493 6 8 3.4689 -0.7125 1.2543 7 14 1.4083 0.1494 2.7704 8 1 2.0202 -0.4590 3.9790 9 1 1.7701 1.5881 2.7034 10 1 -0.0687 0.0132 2.8413 11 6 1.5463 -2.1451 1.2440 12 8 0.8892 -2.5556 0.3110 13 7 1.8350 -2.9622 2.2762 14 6 2.7200 -2.5194 3.3644 15 6 3.8074 -3.5794 3.5693 16 7 3.1770 -4.8903 3.7751 17 6 4.1755 -5.9023 4.1450 18 6 3.4642 -7.1813 4.5913 19 6 4.5040 -8.2351 4.9772 20 1 5.4473 -7.8464 5.3609 21 6 4.5548 -9.5164 4.1425 22 6 3.9914 -9.5515 5.5645 23 17 4.9940 -10.3415 6.8379 24 17 2.2080 -9.7421 5.7496 25 6 2.4180 -5.3086 2.5889 26 6 1.2733 -4.3198 2.3442 27 1 -0.3633 0.5355 0.8771 28 1 -0.3633 0.4918 -0.9023 29 1 -0.3633 -1.0274 0.0253 30 1 3.1300 1.4426 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8901 33 1 1.6767 -1.7489 -1.2492 34 1 1.6767 -0.2074 -2.1392 35 1 3.1300 -0.7208 -1.2494 36 1 2.1425 -2.4050 4.2818 37 1 3.1812 -1.5685 3.0979 38 1 4.4059 -3.3225 4.4434 39 1 4.4482 -3.6183 2.6884 40 1 4.8083 -6.1198 3.2847 41 1 4.7903 -5.5246 4.9620 42 1 2.8313 -6.9637 5.4516 43 1 2.8495 -7.5591 3.7743 44 1 3.8471 -9.6087 3.3187 45 1 5.5316 -9.9707 3.9768 46 1 3.0778 -5.3232 1.7214 47 1 2.0092 -6.3059 2.7518 48 1 0.7779 -4.5587 1.4031 49 1 0.5569 -4.3789 3.1636 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001642841457.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 03:09:27 Heat of formation + Delta-G solvation = -60.623800 kcal Electronic energy + Delta-G solvation = -30156.436024 eV Core-core repulsion = 25979.117197 eV Total energy + Delta-G solvation = -4177.318826 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 365.131 amu Computer time = 36.48 seconds Orbital eigenvalues (eV) -39.49075 -38.70959 -37.65668 -36.35421 -36.01543 -35.26572 -33.95677 -30.99599 -30.61690 -29.44721 -26.53520 -26.11951 -25.94882 -24.11893 -23.06829 -22.77141 -22.29329 -20.84904 -20.46070 -18.63430 -17.05768 -16.80374 -16.13026 -15.57873 -15.29455 -14.89472 -14.50655 -14.39556 -14.30841 -13.92450 -13.56374 -13.43631 -13.23676 -12.98692 -12.93859 -12.66114 -12.58679 -12.28341 -12.04789 -11.95369 -11.70365 -11.66828 -11.47823 -11.36338 -11.20480 -11.07022 -10.88063 -10.78911 -10.68743 -10.55365 -10.43085 -10.37482 -10.07067 -9.99251 -9.80157 -9.74754 -9.44569 -9.26131 -8.91246 -8.30599 -8.22023 -7.55251 -5.82591 -5.39339 0.83980 1.84319 2.81417 3.40073 3.42971 3.50381 3.69513 3.88730 3.95396 4.00423 4.22519 4.65389 4.68057 4.78375 5.06427 5.12510 5.17175 5.32647 5.40217 5.47467 5.58265 5.70390 5.76663 5.88832 5.94995 6.01564 6.06860 6.12085 6.19118 6.25203 6.30861 6.35645 6.59601 6.61677 6.73430 6.81942 6.84330 6.87401 7.02860 7.21259 7.24204 7.25808 7.29677 7.32054 7.53338 7.67600 7.76618 7.84155 8.66118 9.54452 9.92523 Molecular weight = 365.13amu Principal moments of inertia in cm(-1) A = 0.023970 B = 0.002114 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.837938 B =13238.838334 C =13442.757271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.065 4.065 3 C -0.130 4.130 4 C -0.122 4.122 5 C 0.016 3.984 6 O -0.825 6.825 7 Si 0.893 3.107 8 H -0.269 1.269 9 H -0.273 1.273 10 H -0.301 1.301 11 C 0.509 3.491 12 O -0.571 6.571 13 N -0.614 5.614 14 C 0.102 3.898 15 C 0.049 3.951 16 N -0.539 5.539 17 C 0.059 3.941 18 C -0.092 4.092 19 C -0.108 4.108 20 H 0.129 0.871 21 C -0.143 4.143 22 C -0.002 4.002 23 Cl -0.101 7.101 24 Cl -0.090 7.090 25 C 0.043 3.957 26 C 0.111 3.889 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.031 0.969 32 H 0.038 0.962 33 H 0.070 0.930 34 H 0.017 0.983 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.135 0.865 38 H 0.076 0.924 39 H 0.044 0.956 40 H 0.034 0.966 41 H 0.075 0.925 42 H 0.087 0.913 43 H 0.074 0.926 44 H 0.121 0.879 45 H 0.119 0.881 46 H 0.036 0.964 47 H 0.077 0.923 48 H 0.087 0.913 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.574 -15.524 8.275 17.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.067 4.067 3 C -0.188 4.188 4 C -0.179 4.179 5 C -0.086 4.086 6 O -0.771 6.771 7 Si 0.723 3.277 8 H -0.194 1.194 9 H -0.199 1.199 10 H -0.230 1.230 11 C 0.303 3.697 12 O -0.452 6.452 13 N -0.350 5.350 14 C -0.021 4.021 15 C -0.079 4.079 16 N -0.264 5.264 17 C -0.069 4.069 18 C -0.130 4.130 19 C -0.127 4.127 20 H 0.147 0.853 21 C -0.181 4.181 22 C -0.053 4.053 23 Cl -0.074 7.074 24 Cl -0.063 7.063 25 C -0.085 4.085 26 C -0.013 4.013 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.089 0.911 34 H 0.036 0.964 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.152 0.848 38 H 0.095 0.905 39 H 0.062 0.938 40 H 0.053 0.947 41 H 0.094 0.906 42 H 0.106 0.894 43 H 0.093 0.907 44 H 0.139 0.861 45 H 0.137 0.863 46 H 0.054 0.946 47 H 0.095 0.905 48 H 0.106 0.894 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.835 -15.312 8.992 17.852 hybrid contribution 0.484 -0.466 -0.508 0.842 sum 2.319 -15.778 8.484 18.064 Atomic orbital electron populations 1.22182 0.97545 1.02706 0.98860 1.20731 0.92412 0.94844 0.98671 1.21783 1.02297 0.96023 0.98658 1.21746 1.00782 1.01182 0.94154 1.23538 1.00782 0.87543 0.96777 1.94975 1.00647 1.90892 1.90599 0.87463 0.74608 0.81046 0.84600 1.19443 1.19919 1.23032 1.23775 0.75817 0.91008 0.79103 1.90310 1.42166 1.78030 1.34735 1.48218 1.49251 1.13409 1.24113 1.22480 0.90706 1.00022 0.88867 1.22459 0.96758 0.88229 1.00489 1.61993 1.25894 1.02618 1.35937 1.22015 0.93578 0.91438 0.99856 1.21341 0.96190 0.92793 1.02650 1.23315 1.01638 0.88899 0.98866 0.85271 1.24086 1.03635 0.99340 0.91051 1.26852 0.81687 1.04353 0.92443 1.98750 1.69262 1.82594 1.56753 1.98758 1.11964 1.97771 1.97835 1.22501 0.96363 0.98548 0.91123 1.21493 0.94752 0.83155 1.01875 0.94701 0.94648 0.90601 0.91675 0.95036 0.94258 0.91094 0.96440 0.93105 0.93158 0.84768 0.90520 0.93771 0.94749 0.90618 0.89417 0.90717 0.86118 0.86270 0.94551 0.90487 0.89424 0.92253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.54 7.67 37.16 0.29 -3.26 16 2 C -0.07 -1.63 0.34 -154.50 -0.05 -1.69 16 3 C -0.13 -3.04 7.85 37.16 0.29 -2.75 16 4 C -0.12 -3.00 8.03 37.16 0.30 -2.71 16 5 C 0.02 0.43 0.11 -27.88 0.00 0.43 16 6 O -0.82 -25.29 14.53 -35.23 -0.51 -25.81 16 7 Si 0.89 21.93 20.61 -169.99 -3.50 18.43 16 8 H -0.27 -6.21 5.04 56.52 0.28 -5.93 16 9 H -0.27 -6.68 6.09 56.52 0.34 -6.34 16 10 H -0.30 -7.22 6.68 56.52 0.38 -6.84 16 11 C 0.51 13.12 5.64 -10.98 -0.06 13.06 16 12 O -0.57 -15.05 10.81 5.56 0.06 -14.99 16 13 N -0.61 -13.87 2.88 -172.46 -0.50 -14.36 16 14 C 0.10 2.17 4.25 -3.60 -0.02 2.16 16 15 C 0.05 0.86 5.62 -3.70 -0.02 0.84 16 16 N -0.54 -8.02 4.63 -234.32 -1.09 -9.10 16 17 C 0.06 0.67 4.92 -3.82 -0.02 0.65 16 18 C -0.09 -0.85 4.52 -26.73 -0.12 -0.97 16 19 C -0.11 -0.81 5.58 -90.62 -0.51 -1.32 16 20 H 0.13 0.88 8.07 -51.93 -0.42 0.46 16 21 C -0.14 -0.94 9.86 -26.73 -0.26 -1.20 16 22 C 0.00 -0.02 3.62 -26.74 -0.10 -0.11 16 23 Cl -0.10 -0.87 29.29 -51.86 -1.52 -2.39 16 24 Cl -0.09 -0.85 28.23 -51.86 -1.46 -2.32 16 25 C 0.04 0.67 5.46 -3.70 -0.02 0.65 16 26 C 0.11 2.04 6.61 -3.60 -0.02 2.02 16 27 H 0.03 0.76 5.77 -51.93 -0.30 0.46 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.08 1.81 5.60 -51.93 -0.29 1.52 16 30 H 0.06 1.61 7.67 -51.93 -0.40 1.21 16 31 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.04 0.89 5.43 -51.93 -0.28 0.61 16 33 H 0.07 1.84 5.39 -51.93 -0.28 1.56 16 34 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.05 1.33 7.69 -51.93 -0.40 0.93 16 36 H 0.05 1.01 7.47 -51.93 -0.39 0.63 16 37 H 0.14 3.32 3.50 -51.93 -0.18 3.14 16 38 H 0.08 1.18 7.99 -51.93 -0.41 0.76 16 39 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.03 0.39 8.12 -51.93 -0.42 -0.03 16 41 H 0.08 0.79 7.97 -51.93 -0.41 0.37 16 42 H 0.09 0.90 8.02 -51.93 -0.42 0.48 16 43 H 0.07 0.70 6.14 -51.93 -0.32 0.38 16 44 H 0.12 0.74 8.03 -51.93 -0.42 0.32 16 45 H 0.12 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 47 H 0.08 0.97 6.16 -51.93 -0.32 0.65 16 48 H 0.09 1.67 7.04 -51.93 -0.37 1.30 16 49 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 381.94 15.07 5.76 5.76 Total: -1.00 -30.40 381.94 -11.07 -41.47 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -7.98 Total: -2.48 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: -0.33 Total: 5.79 kcal Atomic # 7 Polarization: -21.89 SS G_CDS: -1.58 Total: -23.47 kcal Atomic # 8 Polarization: -40.34 SS G_CDS: -0.45 Total: -40.79 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -3.50 Total: 18.43 kcal Atomic # 17 Polarization: -1.73 SS G_CDS: -2.98 Total: -4.71 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.40 -11.07 -41.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001642841457.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.155 kcal (2) G-P(sol) polarization free energy of solvation -30.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 36.49 seconds