Wall clock time and date at job start Thu Mar 26 2020 06:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.46061 * 2 1 4 4 C 1.54380 * 110.41304 * 237.58255 * 2 1 3 5 5 H 1.08992 * 110.32318 * 336.36681 * 4 2 1 6 6 N 1.46503 * 110.32220 * 98.47641 * 4 2 1 7 7 C 1.34773 * 119.99600 * 204.99888 * 6 4 2 8 8 O 1.21277 * 120.00466 * 355.24455 * 7 6 4 9 9 C 1.50702 * 119.99826 * 175.24205 * 7 6 4 10 10 O 1.42903 * 109.46842 * 34.60645 * 9 7 6 11 11 Si 1.86302 * 109.47113 * 154.60166 * 9 7 6 12 12 H 1.48497 * 109.47078 * 60.00135 * 11 9 7 13 13 H 1.48496 * 109.47148 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.46906 * 300.00145 * 11 9 7 15 15 C 1.52992 * 109.47464 * 274.60563 * 9 7 6 16 16 C 1.53002 * 109.47379 * 64.27676 * 15 9 7 17 17 C 1.52999 * 109.47245 * 184.27844 * 15 9 7 18 18 C 1.52998 * 109.47068 * 304.27954 * 15 9 7 19 19 C 1.54259 * 105.05837 * 217.37004 * 4 2 1 20 20 C 1.54382 * 105.06134 * 0.02562 * 19 4 2 21 21 N 1.48555 * 104.59510 * 23.85292 * 20 19 4 22 22 C 1.46897 * 111.00163 * 200.95701 * 21 20 19 23 23 C 1.50696 * 109.47493 * 285.42177 * 22 21 20 24 24 C 1.38653 * 120.79740 * 104.99500 * 23 22 21 25 25 C 1.38189 * 119.17867 * 180.23413 * 24 23 22 26 26 N 1.31890 * 120.79357 * 359.47461 * 25 24 23 27 27 C 1.31846 * 121.73520 * 0.53989 * 26 25 24 28 28 C 1.38352 * 120.74648 * 359.72905 * 27 26 25 29 29 Cl 1.73599 * 120.43164 * 180.02562 * 28 27 26 30 30 H 1.09000 * 109.47760 * 299.04183 * 1 2 3 31 31 H 1.09007 * 109.47148 * 59.04620 * 1 2 3 32 32 H 1.09004 * 109.47486 * 179.03833 * 1 2 3 33 33 H 0.97003 * 119.99860 * 24.99838 * 6 4 2 34 34 H 1.09003 * 109.47146 * 60.00184 * 16 15 9 35 35 H 1.08997 * 109.47188 * 180.02562 * 16 15 9 36 36 H 1.09006 * 109.47197 * 300.00193 * 16 15 9 37 37 H 1.09004 * 109.47262 * 60.00152 * 17 15 9 38 38 H 1.09010 * 109.47001 * 179.97438 * 17 15 9 39 39 H 1.08990 * 109.47257 * 299.99363 * 17 15 9 40 40 H 1.09006 * 109.47459 * 55.44741 * 18 15 9 41 41 H 1.08997 * 109.47904 * 175.45068 * 18 15 9 42 42 H 1.09000 * 109.47247 * 295.44928 * 18 15 9 43 43 H 1.08998 * 110.32568 * 118.90109 * 19 4 2 44 44 H 1.09006 * 110.32309 * 241.10491 * 19 4 2 45 45 H 1.08997 * 110.40936 * 265.07249 * 20 19 4 46 46 H 1.09003 * 110.40928 * 142.63167 * 20 19 4 47 47 H 1.09000 * 109.47412 * 165.41858 * 22 21 20 48 48 H 1.09003 * 109.46657 * 45.41981 * 22 21 20 49 49 H 1.07997 * 120.41021 * 359.95553 * 24 23 22 50 50 H 1.07999 * 119.60474 * 179.72888 * 25 24 23 51 51 H 1.07998 * 119.62535 * 179.69927 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0684 -0.7756 -1.2214 5 1 1.3229 -1.4868 -1.5769 6 7 2.4357 0.1537 -2.2927 7 6 2.4426 -0.2641 -3.5741 8 8 2.2293 -1.4295 -3.8332 9 6 2.7153 0.7171 -4.6850 10 8 3.6596 1.6921 -4.2381 11 14 3.4085 -0.1893 -6.1577 12 1 2.4274 -1.2026 -6.6221 13 1 3.6779 0.7776 -7.2521 14 1 4.6735 -0.8652 -5.7725 15 6 1.4122 1.4135 -5.0818 16 6 0.8988 2.2443 -3.9041 17 6 1.6682 2.3304 -6.2796 18 6 0.3664 0.3623 -5.4586 19 6 3.3177 -1.5189 -0.7052 20 6 3.4286 -1.1303 0.7848 21 7 2.0475 -0.7471 1.1755 22 6 2.0558 0.1001 2.3755 23 6 2.3490 -0.7472 3.5867 24 6 3.5939 -0.7080 4.1959 25 6 3.8280 -1.5027 5.3019 26 7 2.8813 -2.2837 5.7848 27 6 1.6858 -2.3473 5.2323 28 6 1.3796 -1.5848 4.1192 29 17 -0.1972 -1.6744 3.3986 30 1 -0.3634 0.4989 0.8984 31 1 -0.3634 0.5286 -0.8814 32 1 -0.3634 -1.0275 -0.0172 33 1 2.6738 1.0696 -2.0798 34 1 1.6438 2.9933 -3.6356 35 1 -0.0299 2.7401 -4.1866 36 1 0.7164 1.5911 -3.0507 37 1 2.0339 1.7385 -7.1187 38 1 0.7396 2.8263 -6.5625 39 1 2.4131 3.0794 -6.0111 40 1 0.2431 -0.3396 -4.6337 41 1 -0.5850 0.8531 -5.6632 42 1 0.6960 -0.1759 -6.3473 43 1 3.1861 -2.5961 -0.8064 44 1 4.2042 -1.1923 -1.2490 45 1 4.1067 -0.2859 0.9080 46 1 3.7685 -1.9812 1.3753 47 1 1.0816 0.5752 2.4916 48 1 2.8240 0.8667 2.2737 49 1 4.3725 -0.0679 3.8081 50 1 4.7966 -1.4810 5.7792 51 1 0.9374 -3.0024 5.6531 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689282863.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 06:52:06 Heat of formation + Delta-G solvation = -64.445539 kcal Electronic energy + Delta-G solvation = -32917.022034 eV Core-core repulsion = 28649.232944 eV Total energy + Delta-G solvation = -4267.789089 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 368.165 amu Computer time = -7.83 seconds Orbital eigenvalues (eV) -40.67396 -39.55917 -38.18074 -36.74554 -35.66094 -34.57188 -32.69399 -31.39161 -31.24734 -30.28284 -29.34807 -26.45259 -26.24366 -25.93223 -25.12115 -23.84941 -23.44760 -22.44936 -20.88899 -20.19318 -19.22674 -17.66317 -17.22008 -16.99197 -16.34582 -15.97584 -15.52849 -15.23895 -14.68256 -14.43995 -14.29548 -14.27223 -14.17520 -13.65020 -13.51141 -13.16719 -13.00961 -12.70168 -12.63289 -12.34573 -12.23444 -12.18761 -12.11784 -11.79804 -11.55172 -11.45804 -11.37308 -11.27558 -11.14045 -11.06757 -10.87352 -10.68844 -10.41932 -10.34995 -10.05735 -9.92301 -9.85635 -9.83009 -9.49289 -9.19618 -9.19132 -9.04663 -8.68855 -8.55954 -7.98141 -5.80682 -5.36410 0.64243 0.78167 1.89523 3.30221 3.57064 3.66870 3.81542 3.83313 4.04085 4.10293 4.22452 4.31976 4.43051 4.60970 4.68136 4.85328 4.90411 5.00646 5.11498 5.25133 5.27786 5.30974 5.36630 5.52048 5.53047 5.59667 5.76426 5.85693 5.90087 5.98527 6.03165 6.05083 6.11852 6.12835 6.17325 6.33809 6.37893 6.46309 6.48887 6.55287 6.72154 6.73720 6.77733 6.83603 6.90459 6.94308 7.05443 7.13598 7.46117 7.49096 7.51603 7.62038 7.66221 8.74025 9.46687 10.07597 Molecular weight = 368.17amu Principal moments of inertia in cm(-1) A = 0.019023 B = 0.002553 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.520304 B =10966.090628 C =11476.450460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.057 3.943 3 H 0.060 0.940 4 C 0.145 3.855 5 H 0.092 0.908 6 N -0.712 5.712 7 C 0.509 3.491 8 O -0.586 6.586 9 C 0.002 3.998 10 O -0.847 6.847 11 Si 0.960 3.040 12 H -0.297 1.297 13 H -0.291 1.291 14 H -0.296 1.296 15 C -0.080 4.080 16 C -0.116 4.116 17 C -0.129 4.129 18 C -0.149 4.149 19 C -0.135 4.135 20 C 0.035 3.965 21 N -0.492 5.492 22 C 0.077 3.923 23 C -0.021 4.021 24 C -0.155 4.155 25 C 0.098 3.902 26 N -0.474 5.474 27 C 0.108 3.892 28 C -0.068 4.068 29 Cl -0.040 7.040 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.407 0.593 34 H 0.063 0.937 35 H 0.025 0.975 36 H 0.042 0.958 37 H 0.041 0.959 38 H 0.033 0.967 39 H 0.065 0.935 40 H 0.053 0.947 41 H 0.037 0.963 42 H 0.049 0.951 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.045 0.955 46 H 0.076 0.924 47 H 0.094 0.906 48 H 0.055 0.945 49 H 0.141 0.859 50 H 0.161 0.839 51 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.859 -1.675 17.918 18.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.051 4.051 3 H 0.078 0.922 4 C 0.038 3.962 5 H 0.110 0.890 6 N -0.366 5.366 7 C 0.301 3.699 8 O -0.469 6.469 9 C -0.101 4.101 10 O -0.794 6.794 11 Si 0.793 3.207 12 H -0.225 1.225 13 H -0.219 1.219 14 H -0.223 1.223 15 C -0.081 4.081 16 C -0.174 4.174 17 C -0.186 4.186 18 C -0.206 4.206 19 C -0.174 4.174 20 C -0.093 4.093 21 N -0.217 5.217 22 C -0.051 4.051 23 C -0.030 4.030 24 C -0.176 4.176 25 C -0.058 4.058 26 N -0.183 5.183 27 C -0.050 4.050 28 C -0.097 4.097 29 Cl -0.011 7.011 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.244 0.756 34 H 0.082 0.918 35 H 0.044 0.956 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.052 0.948 39 H 0.084 0.916 40 H 0.072 0.928 41 H 0.056 0.944 42 H 0.068 0.932 43 H 0.091 0.909 44 H 0.096 0.904 45 H 0.064 0.936 46 H 0.094 0.906 47 H 0.112 0.888 48 H 0.073 0.927 49 H 0.159 0.841 50 H 0.179 0.821 51 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -4.805 -3.669 17.910 18.903 hybrid contribution 0.262 1.592 -0.549 1.704 sum -4.543 -2.077 17.361 18.066 Atomic orbital electron populations 1.21680 0.93252 1.02624 1.01387 1.22867 0.96489 0.96125 0.89667 0.92223 1.21513 0.95946 0.91964 0.86762 0.89005 1.46061 1.70344 1.14661 1.05497 1.23632 0.71086 0.89982 0.85236 1.90406 1.51947 1.20575 1.83940 1.24061 0.93625 0.97119 0.95315 1.94978 1.52536 1.49830 1.82016 0.85937 0.79255 0.75110 0.80415 1.22524 1.21881 1.22333 1.21000 0.96950 0.95079 0.95055 1.21623 0.98377 0.99735 0.97625 1.21734 0.99871 0.99884 0.97133 1.22035 0.97935 0.99170 1.01483 1.22778 0.99631 1.01219 0.93812 1.23155 0.89288 1.00080 0.96787 1.65377 1.18568 1.36119 1.01594 1.21236 1.02788 0.93045 0.88036 1.20141 0.92337 0.94955 0.95564 1.22137 0.96719 1.01315 0.97433 1.22828 0.98336 0.91460 0.93196 1.67805 1.00739 1.19400 1.30326 1.22793 0.94347 0.96439 0.91425 1.21973 0.89572 1.00827 0.97357 1.98395 1.22792 1.97170 1.82779 0.92941 0.91799 0.91735 0.75611 0.91775 0.95626 0.93912 0.93978 0.94764 0.91592 0.92773 0.94422 0.93206 0.90938 0.90408 0.93646 0.90582 0.88791 0.92701 0.84085 0.82146 0.82002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.67 9.34 37.16 0.35 -1.32 16 2 C 0.06 0.78 2.58 -66.06 -0.17 0.61 16 3 H 0.06 0.83 7.61 -51.93 -0.40 0.43 16 4 C 0.14 2.53 2.93 -66.55 -0.19 2.33 16 5 H 0.09 1.76 7.33 -51.93 -0.38 1.37 16 6 N -0.71 -15.14 3.73 -52.47 -0.20 -15.33 16 7 C 0.51 12.92 4.72 -10.99 -0.05 12.87 16 8 O -0.59 -15.72 14.13 5.56 0.08 -15.64 16 9 C 0.00 0.05 0.27 -27.89 -0.01 0.04 16 10 O -0.85 -26.23 15.57 -35.23 -0.55 -26.78 16 11 Si 0.96 25.90 22.16 -169.99 -3.77 22.14 16 12 H -0.30 -7.72 6.49 56.52 0.37 -7.35 16 13 H -0.29 -7.61 6.37 56.52 0.36 -7.25 16 14 H -0.30 -8.42 7.11 56.52 0.40 -8.01 16 15 C -0.08 -1.86 0.38 -154.51 -0.06 -1.91 16 16 C -0.12 -2.44 7.77 37.16 0.29 -2.15 16 17 C -0.13 -2.86 7.78 37.16 0.29 -2.58 16 18 C -0.15 -3.19 7.69 37.16 0.29 -2.91 16 19 C -0.14 -2.20 6.79 -25.35 -0.17 -2.37 16 20 C 0.03 0.45 6.12 -2.18 -0.01 0.43 16 21 N -0.49 -6.03 5.00 -223.56 -1.12 -7.14 16 22 C 0.08 0.79 4.32 -4.98 -0.02 0.77 16 23 C -0.02 -0.21 5.09 -104.29 -0.53 -0.74 16 24 C -0.16 -1.32 9.77 -39.45 -0.39 -1.71 16 25 C 0.10 0.84 11.18 -17.54 -0.20 0.64 16 26 N -0.47 -4.89 10.36 -13.22 -0.14 -5.02 16 27 C 0.11 1.05 10.99 -17.50 -0.19 0.86 16 28 C -0.07 -0.69 6.34 -39.35 -0.25 -0.94 16 29 Cl -0.04 -0.41 27.81 -51.86 -1.44 -1.85 16 30 H 0.05 0.58 7.31 -51.93 -0.38 0.20 16 31 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 32 H 0.06 0.84 8.12 -51.93 -0.42 0.42 16 33 H 0.41 8.76 7.34 -40.82 -0.30 8.46 16 34 H 0.06 1.44 7.58 -51.93 -0.39 1.05 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.04 0.85 6.35 -51.93 -0.33 0.52 16 37 H 0.04 0.93 5.37 -51.93 -0.28 0.66 16 38 H 0.03 0.64 8.14 -51.92 -0.42 0.21 16 39 H 0.07 1.56 7.80 -51.93 -0.41 1.15 16 40 H 0.05 1.20 6.45 -51.93 -0.33 0.86 16 41 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.05 1.08 6.02 -51.93 -0.31 0.77 16 43 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.08 1.43 7.95 -51.93 -0.41 1.02 16 45 H 0.05 0.56 7.75 -51.93 -0.40 0.16 16 46 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 47 H 0.09 0.94 6.72 -51.93 -0.35 0.59 16 48 H 0.05 0.53 7.64 -51.93 -0.40 0.13 16 49 H 0.14 0.94 8.05 -52.49 -0.42 0.51 16 50 H 0.16 0.93 8.06 -52.49 -0.42 0.50 16 51 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 403.11 15.07 6.07 6.07 Total: -1.00 -32.12 403.11 -10.26 -42.38 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -8.17 Total: -0.75 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -1.03 Total: 1.94 kcal Atomic # 7 Polarization: -26.05 SS G_CDS: -1.45 Total: -27.50 kcal Atomic # 8 Polarization: -41.95 SS G_CDS: -0.47 Total: -42.42 kcal Atomic # 14 Polarization: 25.90 SS G_CDS: -3.77 Total: 22.14 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -1.44 Total: -1.85 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.12 -10.26 -42.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689282863.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.069 kcal (2) G-P(sol) polarization free energy of solvation -32.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -7.83 seconds