Wall clock time and date at job start Thu Mar 26 2020 06:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.46061 * 2 1 4 4 C 1.54380 * 110.41304 * 237.58255 * 2 1 3 5 5 H 1.08992 * 110.32318 * 336.36681 * 4 2 1 6 6 N 1.46503 * 110.32220 * 98.47641 * 4 2 1 7 7 C 1.34773 * 119.99600 * 204.99888 * 6 4 2 8 8 O 1.21277 * 120.00466 * 355.24455 * 7 6 4 9 9 C 1.50702 * 119.99826 * 175.24205 * 7 6 4 10 10 O 1.42903 * 109.46842 * 34.60645 * 9 7 6 11 11 Si 1.86302 * 109.47113 * 154.60166 * 9 7 6 12 12 H 1.48497 * 109.47078 * 60.00135 * 11 9 7 13 13 H 1.48496 * 109.47148 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.46906 * 300.00145 * 11 9 7 15 15 C 1.52992 * 109.47464 * 274.60563 * 9 7 6 16 16 C 1.53002 * 109.47379 * 64.27676 * 15 9 7 17 17 C 1.52999 * 109.47245 * 184.27844 * 15 9 7 18 18 C 1.52998 * 109.47068 * 304.27954 * 15 9 7 19 19 C 1.54259 * 105.05837 * 217.37004 * 4 2 1 20 20 C 1.54382 * 105.06134 * 0.02562 * 19 4 2 21 21 N 1.48555 * 104.59510 * 23.85292 * 20 19 4 22 22 C 1.46897 * 111.00163 * 200.95701 * 21 20 19 23 23 C 1.50696 * 109.47493 * 285.42177 * 22 21 20 24 24 C 1.38653 * 120.79740 * 104.99500 * 23 22 21 25 25 C 1.38189 * 119.17867 * 180.23413 * 24 23 22 26 26 N 1.31890 * 120.79357 * 359.47461 * 25 24 23 27 27 C 1.31846 * 121.73520 * 0.53989 * 26 25 24 28 28 C 1.38352 * 120.74648 * 359.72905 * 27 26 25 29 29 Cl 1.73599 * 120.43164 * 180.02562 * 28 27 26 30 30 H 1.09000 * 109.47760 * 299.04183 * 1 2 3 31 31 H 1.09007 * 109.47148 * 59.04620 * 1 2 3 32 32 H 1.09004 * 109.47486 * 179.03833 * 1 2 3 33 33 H 0.97003 * 119.99860 * 24.99838 * 6 4 2 34 34 H 1.09003 * 109.47146 * 60.00184 * 16 15 9 35 35 H 1.08997 * 109.47188 * 180.02562 * 16 15 9 36 36 H 1.09006 * 109.47197 * 300.00193 * 16 15 9 37 37 H 1.09004 * 109.47262 * 60.00152 * 17 15 9 38 38 H 1.09010 * 109.47001 * 179.97438 * 17 15 9 39 39 H 1.08990 * 109.47257 * 299.99363 * 17 15 9 40 40 H 1.09006 * 109.47459 * 55.44741 * 18 15 9 41 41 H 1.08997 * 109.47904 * 175.45068 * 18 15 9 42 42 H 1.09000 * 109.47247 * 295.44928 * 18 15 9 43 43 H 1.08998 * 110.32568 * 118.90109 * 19 4 2 44 44 H 1.09006 * 110.32309 * 241.10491 * 19 4 2 45 45 H 1.08997 * 110.40936 * 265.07249 * 20 19 4 46 46 H 1.09003 * 110.40928 * 142.63167 * 20 19 4 47 47 H 1.09000 * 109.47412 * 165.41858 * 22 21 20 48 48 H 1.09003 * 109.46657 * 45.41981 * 22 21 20 49 49 H 1.07997 * 120.41021 * 359.95553 * 24 23 22 50 50 H 1.07999 * 119.60474 * 179.72888 * 25 24 23 51 51 H 1.07998 * 119.62535 * 179.69927 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0684 -0.7756 -1.2214 5 1 1.3229 -1.4868 -1.5769 6 7 2.4357 0.1537 -2.2927 7 6 2.4426 -0.2641 -3.5741 8 8 2.2293 -1.4295 -3.8332 9 6 2.7153 0.7171 -4.6850 10 8 3.6596 1.6921 -4.2381 11 14 3.4085 -0.1893 -6.1577 12 1 2.4274 -1.2026 -6.6221 13 1 3.6779 0.7776 -7.2521 14 1 4.6735 -0.8652 -5.7725 15 6 1.4122 1.4135 -5.0818 16 6 0.8988 2.2443 -3.9041 17 6 1.6682 2.3304 -6.2796 18 6 0.3664 0.3623 -5.4586 19 6 3.3177 -1.5189 -0.7052 20 6 3.4286 -1.1303 0.7848 21 7 2.0475 -0.7471 1.1755 22 6 2.0558 0.1001 2.3755 23 6 2.3490 -0.7472 3.5867 24 6 3.5939 -0.7080 4.1959 25 6 3.8280 -1.5027 5.3019 26 7 2.8813 -2.2837 5.7848 27 6 1.6858 -2.3473 5.2323 28 6 1.3796 -1.5848 4.1192 29 17 -0.1972 -1.6744 3.3986 30 1 -0.3634 0.4989 0.8984 31 1 -0.3634 0.5286 -0.8814 32 1 -0.3634 -1.0275 -0.0172 33 1 2.6738 1.0696 -2.0798 34 1 1.6438 2.9933 -3.6356 35 1 -0.0299 2.7401 -4.1866 36 1 0.7164 1.5911 -3.0507 37 1 2.0339 1.7385 -7.1187 38 1 0.7396 2.8263 -6.5625 39 1 2.4131 3.0794 -6.0111 40 1 0.2431 -0.3396 -4.6337 41 1 -0.5850 0.8531 -5.6632 42 1 0.6960 -0.1759 -6.3473 43 1 3.1861 -2.5961 -0.8064 44 1 4.2042 -1.1923 -1.2490 45 1 4.1067 -0.2859 0.9080 46 1 3.7685 -1.9812 1.3753 47 1 1.0816 0.5752 2.4916 48 1 2.8240 0.8667 2.2737 49 1 4.3725 -0.0679 3.8081 50 1 4.7966 -1.4810 5.7792 51 1 0.9374 -3.0024 5.6531 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689282863.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 06:52:54 Heat of formation + Delta-G solvation = -87.466068 kcal Electronic energy + Delta-G solvation = -32918.020279 eV Core-core repulsion = 28649.232944 eV Total energy + Delta-G solvation = -4268.787334 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 368.165 amu Computer time = -26.82 seconds Orbital eigenvalues (eV) -41.48970 -40.95960 -39.71497 -37.51778 -37.44297 -35.79324 -33.97961 -32.44419 -32.10212 -31.96738 -30.83614 -28.14193 -27.92630 -27.03523 -26.42385 -25.28225 -24.51198 -23.29306 -22.14777 -21.47020 -20.89554 -19.44874 -18.06990 -17.76042 -17.36837 -17.13967 -16.85290 -16.63244 -16.11543 -16.05266 -15.66926 -15.29859 -15.13861 -14.93144 -14.77020 -14.62438 -14.49172 -14.24594 -14.16393 -13.89925 -13.53819 -13.12162 -13.06725 -13.00365 -12.92891 -12.83136 -12.71833 -12.48923 -12.43787 -12.35882 -12.30223 -12.08191 -12.03468 -11.96477 -11.74265 -11.65493 -11.55101 -11.16132 -10.98272 -10.69749 -10.62362 -10.55807 -9.89134 -9.72832 -9.57539 -8.05448 -7.61759 -0.03393 0.07555 1.16267 1.39065 1.45832 1.63990 2.02732 2.35109 2.60122 2.83437 3.15576 3.42747 3.45815 3.49600 3.70678 3.83405 3.95038 4.05734 4.13577 4.20978 4.27014 4.29360 4.32779 4.36580 4.38118 4.44801 4.57607 4.65950 4.68736 4.74954 4.81482 4.83902 4.86163 4.88408 4.98186 4.98921 5.01054 5.04768 5.08803 5.10682 5.13002 5.17415 5.28490 5.31110 5.35787 5.53589 5.62589 5.66992 5.75001 5.84686 5.92327 5.96591 6.84645 6.86194 7.48114 7.98296 Molecular weight = 368.17amu Principal moments of inertia in cm(-1) A = 0.019023 B = 0.002553 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.520304 B =10966.090628 C =11476.450460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.069 3.931 3 H 0.064 0.936 4 C 0.140 3.860 5 H 0.074 0.926 6 N -0.700 5.700 7 C 0.505 3.495 8 O -0.609 6.609 9 C -0.014 4.014 10 O -0.889 6.889 11 Si 0.949 3.051 12 H -0.284 1.284 13 H -0.282 1.282 14 H -0.326 1.326 15 C -0.087 4.087 16 C -0.107 4.107 17 C -0.127 4.127 18 C -0.142 4.142 19 C -0.135 4.135 20 C 0.048 3.952 21 N -0.491 5.491 22 C 0.079 3.921 23 C -0.031 4.031 24 C -0.152 4.152 25 C 0.096 3.904 26 N -0.494 5.494 27 C 0.101 3.899 28 C -0.077 4.077 29 Cl -0.046 7.046 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.406 0.594 34 H 0.043 0.957 35 H 0.059 0.941 36 H 0.045 0.955 37 H 0.033 0.967 38 H 0.073 0.927 39 H 0.043 0.957 40 H 0.041 0.959 41 H 0.075 0.925 42 H 0.040 0.960 43 H 0.067 0.933 44 H 0.052 0.948 45 H 0.056 0.944 46 H 0.087 0.913 47 H 0.099 0.901 48 H 0.068 0.932 49 H 0.163 0.837 50 H 0.188 0.812 51 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.166 -0.814 19.613 20.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.040 4.040 3 H 0.082 0.918 4 C 0.034 3.966 5 H 0.092 0.908 6 N -0.352 5.352 7 C 0.296 3.704 8 O -0.494 6.494 9 C -0.117 4.117 10 O -0.837 6.837 11 Si 0.783 3.217 12 H -0.211 1.211 13 H -0.209 1.209 14 H -0.255 1.255 15 C -0.088 4.088 16 C -0.165 4.165 17 C -0.184 4.184 18 C -0.199 4.199 19 C -0.175 4.175 20 C -0.080 4.080 21 N -0.216 5.216 22 C -0.049 4.049 23 C -0.040 4.040 24 C -0.172 4.172 25 C -0.060 4.060 26 N -0.203 5.203 27 C -0.057 4.057 28 C -0.107 4.107 29 Cl -0.017 7.017 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.243 0.757 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.052 0.948 38 H 0.092 0.908 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.093 0.907 42 H 0.059 0.941 43 H 0.086 0.914 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.105 0.895 47 H 0.117 0.883 48 H 0.086 0.914 49 H 0.180 0.820 50 H 0.204 0.796 51 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -6.135 -2.801 19.623 20.750 hybrid contribution 0.739 1.279 -1.050 1.812 sum -5.397 -1.523 18.572 19.400 Atomic orbital electron populations 1.21625 0.92175 1.02445 1.02084 1.22721 0.97205 0.95653 0.88432 0.91838 1.21699 0.96208 0.91639 0.87025 0.90770 1.45918 1.68951 1.15072 1.05234 1.23174 0.71559 0.89256 0.86450 1.90384 1.53467 1.21074 1.84482 1.24194 0.94952 0.96990 0.95548 1.94923 1.54322 1.51479 1.82949 0.86139 0.78284 0.75618 0.81666 1.21146 1.20921 1.25505 1.20971 0.95492 0.95845 0.96480 1.21517 0.99117 0.99023 0.96807 1.21703 1.01172 0.99181 0.96324 1.21948 0.99011 0.98482 1.00503 1.22694 0.97848 1.00726 0.96195 1.23042 0.89998 1.00890 0.94091 1.65376 1.17970 1.36569 1.01675 1.21267 1.03612 0.93021 0.86979 1.20193 0.92962 0.95190 0.95667 1.22378 0.96577 1.01164 0.97073 1.23309 0.98981 0.90625 0.93099 1.67846 1.01239 1.20240 1.30974 1.23010 0.94646 0.96607 0.91407 1.22060 0.89503 1.01369 0.97736 1.98390 1.23240 1.97234 1.82874 0.90882 0.92454 0.92318 0.75693 0.93809 0.92241 0.93588 0.94776 0.90799 0.93831 0.93995 0.90652 0.94115 0.91429 0.92948 0.92582 0.89471 0.88317 0.91413 0.81981 0.79560 0.80844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 9.34 71.98 0.67 -2.27 16 2 C 0.07 1.78 2.58 45.06 0.12 1.89 16 3 H 0.06 1.63 7.61 -2.39 -0.02 1.61 16 4 C 0.14 4.86 2.93 45.89 0.13 4.99 16 5 H 0.07 2.86 7.33 -2.39 -0.02 2.85 16 6 N -0.70 -29.96 3.73 -438.30 -1.64 -31.59 16 7 C 0.51 25.95 4.72 87.66 0.41 26.37 16 8 O -0.61 -33.29 14.13 -3.02 -0.04 -33.33 16 9 C -0.01 -0.78 0.27 29.85 0.01 -0.77 16 10 O -0.89 -56.06 15.57 -148.98 -2.32 -58.38 16 11 Si 0.95 52.12 22.16 68.60 1.52 53.64 16 12 H -0.28 -14.84 6.49 99.48 0.65 -14.20 16 13 H -0.28 -14.89 6.37 99.48 0.63 -14.26 16 14 H -0.33 -19.38 7.11 99.48 0.71 -18.67 16 15 C -0.09 -3.93 0.38 -52.18 -0.02 -3.95 16 16 C -0.11 -4.29 7.77 71.98 0.56 -3.73 16 17 C -0.13 -5.42 7.78 71.98 0.56 -4.86 16 18 C -0.14 -5.80 7.69 71.98 0.55 -5.25 16 19 C -0.14 -4.41 6.79 31.49 0.21 -4.20 16 20 C 0.05 1.14 6.12 86.45 0.53 1.67 16 21 N -0.49 -11.03 5.00 -861.20 -4.30 -15.33 16 22 C 0.08 1.40 4.32 85.56 0.37 1.77 16 23 C -0.03 -0.54 5.09 -19.65 -0.10 -0.64 16 24 C -0.15 -2.12 9.77 22.36 0.22 -1.90 16 25 C 0.10 1.39 11.18 84.67 0.95 2.34 16 26 N -0.49 -9.24 10.36 -195.74 -2.03 -11.27 16 27 C 0.10 1.80 10.99 84.72 0.93 2.73 16 28 C -0.08 -1.43 6.34 22.42 0.14 -1.29 16 29 Cl -0.05 -0.88 27.81 -2.72 -0.08 -0.95 16 30 H 0.07 1.41 7.31 -2.39 -0.02 1.40 16 31 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 32 H 0.06 1.45 8.12 -2.38 -0.02 1.43 16 33 H 0.41 17.53 7.34 -92.71 -0.68 16.85 16 34 H 0.04 1.91 7.58 -2.39 -0.02 1.89 16 35 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.05 1.76 6.35 -2.38 -0.02 1.75 16 37 H 0.03 1.47 5.37 -2.39 -0.01 1.46 16 38 H 0.07 2.53 8.14 -2.38 -0.02 2.51 16 39 H 0.04 2.03 7.80 -2.39 -0.02 2.01 16 40 H 0.04 1.79 6.45 -2.38 -0.02 1.78 16 41 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 42 H 0.04 1.70 6.02 -2.39 -0.01 1.69 16 43 H 0.07 2.23 8.14 -2.39 -0.02 2.22 16 44 H 0.05 1.97 7.95 -2.38 -0.02 1.95 16 45 H 0.06 1.25 7.75 -2.39 -0.02 1.23 16 46 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 47 H 0.10 1.69 6.72 -2.39 -0.02 1.67 16 48 H 0.07 1.06 7.64 -2.39 -0.02 1.05 16 49 H 0.16 1.54 8.05 -2.91 -0.02 1.51 16 50 H 0.19 1.56 8.06 -2.91 -0.02 1.54 16 51 H 0.17 2.47 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -71.12 403.11 -1.76 -72.88 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: 0.88 Total: 11.44 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: 6.25 Total: 12.90 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: -7.97 Total: -58.20 kcal Atomic # 8 Polarization: -89.35 SS G_CDS: -2.36 Total: -91.71 kcal Atomic # 14 Polarization: 52.12 SS G_CDS: 1.52 Total: 53.64 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -0.08 Total: -0.95 kcal Total: -71.12 -1.76 -72.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689282863.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.589 kcal (2) G-P(sol) polarization free energy of solvation -71.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -26.82 seconds