Wall clock time and date at job start Thu Mar 26 2020 07:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47281 * 2 1 4 4 H 1.08997 * 109.47116 * 305.59299 * 3 2 1 5 5 C 1.53002 * 109.46876 * 65.59009 * 3 2 1 6 6 N 1.46506 * 109.47104 * 175.00211 * 5 3 2 7 7 C 1.34776 * 120.00312 * 180.02562 * 6 5 3 8 8 O 1.21287 * 119.99518 * 355.29322 * 7 6 5 9 9 C 1.50695 * 119.99986 * 175.28928 * 7 6 5 10 10 O 1.42897 * 109.46822 * 188.33445 * 9 7 6 11 11 Si 1.86297 * 109.47220 * 308.33311 * 9 7 6 12 12 H 1.48505 * 109.47337 * 299.99832 * 11 9 7 13 13 H 1.48499 * 109.47389 * 60.00154 * 11 9 7 14 14 H 1.48504 * 109.47208 * 180.02562 * 11 9 7 15 15 C 1.52994 * 109.47147 * 68.33470 * 9 7 6 16 16 C 1.52999 * 109.47345 * 174.93165 * 15 9 7 17 17 C 1.53000 * 109.47263 * 294.93461 * 15 9 7 18 18 C 1.53004 * 109.47250 * 54.93445 * 15 9 7 19 19 N 1.46898 * 109.47321 * 185.59142 * 3 2 1 20 20 C 1.46899 * 110.99990 * 89.52754 * 19 3 2 21 21 C 1.50697 * 109.47036 * 185.02768 * 20 19 3 22 22 N 1.28985 * 124.90414 * 90.00358 * 21 20 19 23 23 C 1.31822 * 117.13978 * 179.97438 * 22 21 20 24 24 C 1.33757 * 114.46193 * 0.02562 * 23 22 21 25 25 Cl 1.73600 * 126.04570 * 180.02562 * 24 23 22 26 26 S 1.70977 * 124.90348 * 269.69898 * 21 20 19 27 27 H 1.08991 * 109.47315 * 64.87529 * 1 2 3 28 28 H 1.08999 * 109.46896 * 184.87924 * 1 2 3 29 29 H 1.09000 * 109.47203 * 304.87375 * 1 2 3 30 30 H 1.09000 * 109.47478 * 239.99769 * 2 1 3 31 31 H 1.09004 * 109.46929 * 119.99771 * 2 1 3 32 32 H 1.08999 * 109.47578 * 55.00220 * 5 3 2 33 33 H 1.09001 * 109.47254 * 295.00074 * 5 3 2 34 34 H 0.97003 * 119.99378 * 0.02562 * 6 5 3 35 35 H 1.09005 * 109.47034 * 60.00304 * 16 15 9 36 36 H 1.09001 * 109.47160 * 179.97438 * 16 15 9 37 37 H 1.09003 * 109.47106 * 299.99839 * 16 15 9 38 38 H 1.08998 * 109.47420 * 67.14977 * 17 15 9 39 39 H 1.09003 * 109.47401 * 187.15228 * 17 15 9 40 40 H 1.09004 * 109.46762 * 307.14673 * 17 15 9 41 41 H 1.08994 * 109.47276 * 59.99438 * 18 15 9 42 42 H 1.09001 * 109.47158 * 180.02562 * 18 15 9 43 43 H 1.09007 * 109.46772 * 300.00065 * 18 15 9 44 44 H 1.00900 * 111.00005 * 213.48733 * 19 3 2 45 45 H 1.08991 * 109.47191 * 305.03080 * 20 19 3 46 46 H 1.09004 * 109.46719 * 65.03346 * 20 19 3 47 47 H 1.08009 * 122.77524 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5973 1.9844 -0.8356 5 6 1.6480 2.1220 1.3136 6 7 2.2373 3.4623 1.3650 7 6 2.0257 4.2509 2.4372 8 8 1.2788 3.8859 3.3204 9 6 2.7170 5.5861 2.5387 10 8 2.4907 6.1422 3.8355 11 14 4.5466 5.3600 2.2706 12 1 5.0888 4.4421 3.3045 13 1 4.7819 4.7821 0.9231 14 1 5.2280 6.6757 2.3713 15 6 2.1585 6.5319 1.4737 16 6 2.7679 7.9232 1.6570 17 6 2.5114 5.9996 0.0833 18 6 0.6375 6.6186 1.6156 19 7 3.5028 1.4447 -0.1349 20 6 3.9010 1.4787 -1.5485 21 6 5.3994 1.3556 -1.6514 22 7 6.0433 0.2425 -1.7525 23 6 7.3571 0.3130 -1.8336 24 6 7.8482 1.5567 -1.7983 25 17 9.5257 1.9953 -1.8837 26 16 6.4910 2.6715 -1.6583 27 1 -0.3633 0.4363 -0.9303 28 1 -0.3633 -1.0239 0.0874 29 1 -0.3633 0.5876 0.8431 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.0158 1.5310 2.1524 33 1 0.5624 2.2000 1.3725 34 1 2.7799 3.7821 0.6272 35 1 3.8515 7.8615 1.5558 36 1 2.3703 8.5969 0.8979 37 1 2.5164 8.3025 2.6475 38 1 1.9748 5.0680 -0.0961 39 1 2.2264 6.7340 -0.6700 40 1 3.5846 5.8178 0.0256 41 1 0.3860 6.9977 2.6061 42 1 0.2396 7.2921 0.8565 43 1 0.2033 5.6273 1.4850 44 1 3.9118 2.2136 0.3746 45 1 3.4311 0.6503 -2.0784 46 1 3.5826 2.4217 -1.9930 47 1 7.9853 -0.5613 -1.9205 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698593393.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 07:30:00 Heat of formation + Delta-G solvation = -79.772775 kcal Electronic energy + Delta-G solvation = -29619.009386 eV Core-core repulsion = 25567.934044 eV Total energy + Delta-G solvation = -4051.075341 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 362.122 amu Computer time = 40.59 seconds Orbital eigenvalues (eV) -41.00745 -40.75146 -38.82014 -37.90880 -37.50884 -35.08025 -34.18511 -31.90400 -31.36803 -29.46220 -28.07588 -28.05365 -27.21541 -25.80754 -24.46444 -24.33267 -21.49904 -21.31112 -21.15992 -19.74818 -19.34415 -17.63506 -17.29877 -17.06940 -16.92064 -16.34883 -16.25390 -15.68144 -15.52120 -15.33835 -15.08926 -14.82370 -14.77703 -14.66090 -14.30131 -14.11543 -13.90562 -13.63172 -13.40037 -13.25455 -13.15976 -13.09345 -12.88114 -12.63276 -12.53109 -12.43526 -12.37712 -12.08174 -11.96001 -11.95204 -11.72533 -11.49983 -11.44049 -11.35074 -11.02763 -10.79162 -10.51762 -10.37611 -10.00037 -9.87382 -9.55709 -8.11095 -7.59638 -0.61477 -0.24597 0.44891 1.05169 1.20385 1.37600 1.43063 1.57970 2.05078 2.48847 2.67138 2.89544 3.18438 3.67888 3.83225 4.09150 4.13556 4.23835 4.23884 4.25521 4.31413 4.33554 4.47657 4.51671 4.61394 4.66567 4.76192 4.81337 4.84999 4.88926 4.90849 4.96999 4.98264 5.07308 5.17752 5.22025 5.23572 5.30026 5.35832 5.45878 5.58040 5.68450 5.71348 5.86946 5.87677 6.07643 6.52080 6.71522 7.55307 8.06817 Molecular weight = 362.12amu Principal moments of inertia in cm(-1) A = 0.009199 B = 0.003857 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3043.195457 B = 7256.997735 C = 9388.120423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.101 4.101 3 C 0.092 3.908 4 H 0.083 0.917 5 C 0.107 3.893 6 N -0.739 5.739 7 C 0.489 3.511 8 O -0.593 6.593 9 C -0.027 4.027 10 O -0.900 6.900 11 Si 0.920 3.080 12 H -0.325 1.325 13 H -0.217 1.217 14 H -0.273 1.273 15 C -0.087 4.087 16 C -0.123 4.123 17 C -0.162 4.162 18 C -0.107 4.107 19 N -0.693 5.693 20 C 0.129 3.871 21 C 0.054 3.946 22 N -0.466 5.466 23 C 0.054 3.946 24 C -0.205 4.205 25 Cl 0.011 6.989 26 S 0.177 5.823 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.043 0.957 30 H 0.083 0.917 31 H 0.056 0.944 32 H 0.046 0.954 33 H 0.069 0.931 34 H 0.401 0.599 35 H 0.044 0.956 36 H 0.076 0.924 37 H 0.025 0.975 38 H 0.066 0.934 39 H 0.088 0.912 40 H 0.063 0.937 41 H 0.015 0.985 42 H 0.072 0.928 43 H 0.029 0.971 44 H 0.337 0.663 45 H 0.124 0.876 46 H 0.085 0.915 47 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.787 -10.011 -22.528 25.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.139 4.139 3 C -0.017 4.017 4 H 0.101 0.899 5 C -0.017 4.017 6 N -0.400 5.400 7 C 0.280 3.720 8 O -0.473 6.473 9 C -0.128 4.128 10 O -0.846 6.846 11 Si 0.749 3.251 12 H -0.254 1.254 13 H -0.142 1.142 14 H -0.198 1.198 15 C -0.088 4.088 16 C -0.180 4.180 17 C -0.219 4.219 18 C -0.164 4.164 19 N -0.328 5.328 20 C -0.003 4.003 21 C -0.223 4.223 22 N -0.181 5.181 23 C -0.100 4.100 24 C -0.353 4.353 25 Cl 0.039 6.961 26 S 0.430 5.570 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.062 0.938 30 H 0.102 0.898 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.240 0.760 35 H 0.063 0.937 36 H 0.095 0.905 37 H 0.045 0.955 38 H 0.084 0.916 39 H 0.107 0.893 40 H 0.082 0.918 41 H 0.034 0.966 42 H 0.091 0.909 43 H 0.048 0.952 44 H 0.156 0.844 45 H 0.142 0.858 46 H 0.102 0.898 47 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 6.856 -10.271 -21.675 24.946 hybrid contribution 0.630 0.321 0.812 1.077 sum 7.486 -9.950 -20.862 24.296 Atomic orbital electron populations 1.21840 0.94934 1.02352 1.02136 1.21420 0.95581 0.93824 1.03119 1.21819 0.86445 0.97876 0.95593 0.89905 1.21664 0.98778 0.83011 0.98224 1.46816 1.55270 1.16233 1.21718 1.23949 0.79911 0.88523 0.79653 1.90403 1.39113 1.75691 1.42067 1.24358 1.01919 0.89271 0.97298 1.94956 1.89420 1.78192 1.22071 0.86868 0.82796 0.77785 0.77666 1.25390 1.14202 1.19838 1.21005 0.95800 0.96700 0.95295 1.21644 0.99517 0.96243 1.00623 1.22307 1.01709 1.02374 0.95516 1.21489 0.95596 0.99665 0.99662 1.60402 1.09697 1.51909 1.10772 1.20773 0.84594 1.04667 0.90238 1.27266 1.02105 0.90729 1.02233 1.66445 1.07120 1.28796 1.15696 1.22260 0.90142 0.97050 1.00562 1.27087 0.92673 0.97670 1.17893 1.98381 1.08507 1.92415 1.96814 1.84398 0.95997 1.10280 1.66284 0.91372 0.91598 0.93786 0.89823 0.92542 0.93592 0.91261 0.75955 0.93702 0.90499 0.95542 0.91557 0.89318 0.91799 0.96590 0.90949 0.95202 0.84360 0.85831 0.89762 0.78059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.78 71.98 0.70 -1.95 16 2 C -0.10 -1.89 5.68 30.59 0.17 -1.72 16 3 C 0.09 1.98 2.27 44.92 0.10 2.08 16 4 H 0.08 1.40 7.79 -2.39 -0.02 1.38 16 5 C 0.11 3.43 4.94 86.38 0.43 3.86 16 6 N -0.74 -28.09 3.52 -463.04 -1.63 -29.72 16 7 C 0.49 25.86 4.50 87.66 0.39 26.26 16 8 O -0.59 -37.63 16.53 15.85 0.26 -37.37 16 9 C -0.03 -1.47 0.31 29.84 0.01 -1.46 16 10 O -0.90 -65.91 15.87 -130.08 -2.06 -67.98 16 11 Si 0.92 43.85 22.27 68.60 1.53 45.38 16 12 H -0.32 -17.66 7.11 99.48 0.71 -16.95 16 13 H -0.22 -7.28 6.02 99.48 0.60 -6.68 16 14 H -0.27 -13.04 6.41 99.48 0.64 -12.40 16 15 C -0.09 -3.83 0.38 -52.18 -0.02 -3.85 16 16 C -0.12 -5.23 7.90 71.98 0.57 -4.67 16 17 C -0.16 -4.98 6.90 71.98 0.50 -4.48 16 18 C -0.11 -4.78 8.05 71.98 0.58 -4.20 16 19 N -0.69 -15.55 6.26 -495.60 -3.10 -18.65 16 20 C 0.13 2.16 6.02 85.56 0.52 2.68 16 21 C 0.05 1.10 6.94 88.53 0.61 1.71 16 22 N -0.47 -10.27 10.54 -191.35 -2.02 -12.29 16 23 C 0.05 1.03 11.32 83.68 0.95 1.98 16 24 C -0.21 -3.97 7.21 66.80 0.48 -3.48 16 25 Cl 0.01 0.18 29.31 -2.72 -0.08 0.10 16 26 S 0.18 3.45 23.18 -56.49 -1.31 2.14 16 27 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.04 0.91 6.48 -2.39 -0.02 0.90 16 30 H 0.08 1.32 7.64 -2.39 -0.02 1.30 16 31 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 32 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.07 2.28 6.72 -2.39 -0.02 2.26 16 34 H 0.40 12.68 3.71 -92.71 -0.34 12.33 16 35 H 0.04 1.82 5.82 -2.38 -0.01 1.81 16 36 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 37 H 0.03 1.31 7.56 -2.39 -0.02 1.29 16 38 H 0.07 1.87 5.65 -2.39 -0.01 1.85 16 39 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.06 1.81 4.92 -2.38 -0.01 1.80 16 41 H 0.01 0.81 7.82 -2.39 -0.02 0.79 16 42 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 43 H 0.03 1.33 7.07 -2.38 -0.02 1.31 16 44 H 0.34 8.83 6.78 -89.69 -0.61 8.23 16 45 H 0.12 1.74 7.62 -2.39 -0.02 1.72 16 46 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 47 H 0.20 2.86 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -87.15 387.98 -1.79 -88.94 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 0.63 Total: 16.70 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: 5.99 Total: 12.74 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: -6.75 Total: -60.66 kcal Atomic # 8 Polarization: -103.54 SS G_CDS: -1.80 Total: -105.34 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.53 Total: 45.38 kcal Atomic # 16 Polarization: 3.45 SS G_CDS: -1.31 Total: 2.14 kcal Atomic # 17 Polarization: 0.18 SS G_CDS: -0.08 Total: 0.10 kcal Total: -87.15 -1.79 -88.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698593393.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.166 kcal (2) G-P(sol) polarization free energy of solvation -87.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 40.60 seconds