Wall clock time and date at job start Thu Mar 26 2020 07:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35132 * 125.61727 * 2 1 4 4 C 1.40365 * 107.11548 * 179.97438 * 3 2 1 5 5 C 1.36544 * 106.70972 * 0.02562 * 4 3 2 6 6 C 1.46660 * 125.98912 * 179.97438 * 5 4 3 7 7 O 1.21692 * 119.99720 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99910 * 180.02562 * 6 5 4 9 9 C 1.46496 * 119.99918 * 179.97438 * 8 6 5 10 10 H 1.09003 * 110.05515 * 33.58063 * 9 8 6 11 11 C 1.54267 * 110.03205 * 272.16150 * 9 8 6 12 12 C 1.54887 * 104.19451 * 217.10374 * 11 9 8 13 13 C 1.54892 * 102.75078 * 37.94447 * 12 11 9 14 14 H 1.09005 * 110.59653 * 80.78842 * 13 12 11 15 15 C 1.52995 * 110.48695 * 203.37668 * 13 12 11 16 16 N 1.46499 * 109.47559 * 289.77389 * 15 13 12 17 17 C 1.34774 * 120.00349 * 180.02562 * 16 15 13 18 18 O 1.21277 * 120.00050 * 356.01721 * 17 16 15 19 19 C 1.50706 * 119.99735 * 176.01365 * 17 16 15 20 20 O 1.42904 * 109.46533 * 188.20946 * 19 17 16 21 21 Si 1.86300 * 109.47269 * 308.20953 * 19 17 16 22 22 H 1.48500 * 109.46888 * 60.00183 * 21 19 17 23 23 H 1.48495 * 109.47077 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47090 * 300.00173 * 21 19 17 25 25 C 1.52994 * 109.47037 * 68.21305 * 19 17 16 26 26 C 1.53001 * 109.47312 * 59.09937 * 25 19 17 27 27 C 1.53002 * 109.47180 * 179.10262 * 25 19 17 28 28 C 1.53005 * 109.47203 * 299.10158 * 25 19 17 29 29 C 1.53879 * 110.03207 * 154.99559 * 9 8 6 30 30 O 1.33936 * 125.61858 * 180.24638 * 2 1 3 31 31 H 1.08999 * 109.47290 * 89.99595 * 1 2 3 32 32 H 1.08998 * 109.47096 * 209.99291 * 1 2 3 33 33 H 1.09002 * 109.47110 * 329.99908 * 1 2 3 34 34 H 1.08001 * 126.44476 * 359.97438 * 3 2 1 35 35 H 1.08005 * 126.64420 * 179.97438 * 4 3 2 36 36 H 0.97001 * 119.99945 * 359.97438 * 8 6 5 37 37 H 1.08995 * 110.48605 * 98.42988 * 11 9 8 38 38 H 1.08995 * 110.59847 * 335.83570 * 11 9 8 39 39 H 1.09002 * 110.76255 * 279.62517 * 12 11 9 40 40 H 1.09007 * 110.75650 * 156.25593 * 12 11 9 41 41 H 1.09004 * 109.47032 * 49.77518 * 15 13 12 42 42 H 1.09003 * 109.47234 * 169.77352 * 15 13 12 43 43 H 0.97003 * 119.99654 * 359.97438 * 16 15 13 44 44 H 1.09001 * 109.47347 * 60.00177 * 26 25 19 45 45 H 1.09005 * 109.46952 * 179.97438 * 26 25 19 46 46 H 1.08992 * 109.47422 * 300.00198 * 26 25 19 47 47 H 1.08993 * 109.47480 * 59.99519 * 27 25 19 48 48 H 1.08994 * 109.47280 * 180.02562 * 27 25 19 49 49 H 1.09009 * 109.46674 * 299.99731 * 27 25 19 50 50 H 1.08996 * 109.47295 * 67.60765 * 28 25 19 51 51 H 1.08998 * 109.46836 * 187.61104 * 28 25 19 52 52 H 1.08997 * 109.46536 * 307.61048 * 28 25 19 53 53 H 1.08999 * 110.03109 * 359.97438 * 29 9 8 54 54 H 1.09002 * 110.03300 * 238.56867 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2939 1.0985 0.0000 4 6 3.6250 0.6531 0.0006 5 6 3.5823 -0.7117 0.0004 6 6 4.7414 -1.6102 0.0003 7 8 5.8680 -1.1500 -0.0001 8 7 4.5589 -2.9455 -0.0005 9 6 5.7168 -3.8430 -0.0012 10 1 6.5349 -3.3981 0.5654 11 6 6.1678 -4.1227 -1.4497 12 6 6.6040 -5.6087 -1.4314 13 6 5.5607 -6.2598 -0.4898 14 1 4.6331 -6.4609 -1.0258 15 6 6.1176 -7.5493 0.1165 16 7 6.2151 -8.5760 -0.9241 17 6 6.6826 -9.8026 -0.6189 18 8 7.0902 -10.0353 0.4994 19 6 6.6989 -10.8851 -1.6673 20 8 7.0531 -12.1298 -1.0612 21 14 5.0090 -11.0284 -2.4383 22 1 4.6409 -9.7348 -3.0680 23 1 5.0249 -12.0954 -3.4709 24 1 4.0139 -11.3694 -1.3900 25 6 7.7241 -10.5337 -2.7473 26 6 9.1082 -10.3940 -2.1104 27 6 7.7566 -11.6435 -3.8000 28 6 7.3326 -9.2121 -3.4114 29 6 5.3308 -5.2018 0.6092 30 8 2.2870 -1.0888 -0.0047 31 1 -0.3634 0.0001 -1.0276 32 1 -0.3633 -0.8900 0.5137 33 1 -0.3633 0.8900 0.5139 34 1 1.9613 2.1260 -0.0004 35 1 4.5113 1.2703 0.0004 36 1 3.6610 -3.3123 -0.0006 37 1 7.0076 -3.4819 -1.7182 38 1 5.3403 -3.9766 -2.1439 39 1 7.6096 -5.7112 -1.0235 40 1 6.5454 -6.0409 -2.4305 41 1 7.1071 -7.3578 0.5318 42 1 5.4525 -7.8958 0.9075 43 1 5.9424 -8.3730 -1.8326 44 1 9.3872 -11.3355 -1.6373 45 1 9.8386 -10.1441 -2.8800 46 1 9.0851 -9.6035 -1.3605 47 1 6.7706 -11.7430 -4.2537 48 1 8.4873 -11.3934 -4.5691 49 1 8.0356 -12.5851 -3.3268 50 1 7.4400 -8.3989 -2.6936 51 1 7.9821 -9.0293 -4.2674 52 1 6.2968 -9.2667 -3.7463 53 1 4.2821 -5.1933 0.9062 54 1 5.9616 -5.4164 1.4718 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001739005138.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 07:03:55 Heat of formation + Delta-G solvation = -158.011814 kcal Electronic energy + Delta-G solvation = -33812.831117 eV Core-core repulsion = 29328.846009 eV Total energy + Delta-G solvation = -4483.985108 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 365.208 amu Computer time = 7.27 seconds Orbital eigenvalues (eV) -43.72349 -41.11129 -40.61083 -39.05436 -37.51847 -35.96025 -34.56405 -34.05814 -32.91269 -31.86275 -30.75938 -29.58022 -28.22956 -28.04809 -27.69174 -26.29525 -24.53558 -23.61103 -22.64305 -21.62106 -21.39389 -21.29225 -20.94019 -19.52612 -19.37785 -17.58682 -17.53367 -17.34953 -16.89436 -16.63941 -16.41639 -15.95666 -15.69026 -15.57398 -15.29792 -15.02726 -14.96650 -14.66110 -14.50270 -14.20151 -14.13110 -14.04708 -13.99008 -13.82087 -13.72588 -13.55114 -13.17325 -13.05526 -12.88137 -12.79199 -12.59195 -12.48554 -12.39932 -12.14022 -11.93334 -11.81656 -11.75704 -11.64981 -11.57116 -11.46514 -11.41280 -11.30539 -11.06928 -10.99453 -10.46942 -10.26995 -9.76883 -9.48149 -8.07501 -7.56018 -0.03515 1.28092 1.32435 1.41812 1.47466 1.54696 2.05848 2.09434 2.13114 2.58921 2.77403 3.44212 3.59887 3.63205 3.75768 3.89350 3.94074 4.25519 4.26259 4.29143 4.36180 4.38725 4.44093 4.48546 4.52328 4.54023 4.58932 4.60144 4.71989 4.72775 4.73389 4.75610 4.85010 4.89100 4.92136 4.92326 4.98945 4.99395 5.07367 5.08947 5.13058 5.13446 5.20027 5.23536 5.30188 5.32343 5.42856 5.43340 5.46740 5.60261 5.72290 5.80193 5.83490 5.89052 6.39150 6.84526 6.96691 7.62764 8.11655 Molecular weight = 365.21amu Principal moments of inertia in cm(-1) A = 0.018249 B = 0.001900 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.961893 B =14730.397015 C =15168.226843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.025 3.975 3 C -0.232 4.232 4 C -0.122 4.122 5 C -0.111 4.111 6 C 0.602 3.398 7 O -0.559 6.559 8 N -0.700 5.700 9 C 0.143 3.857 10 H 0.082 0.918 11 C -0.124 4.124 12 C -0.118 4.118 13 C -0.093 4.093 14 H 0.099 0.901 15 C 0.120 3.880 16 N -0.734 5.734 17 C 0.485 3.515 18 O -0.600 6.600 19 C -0.032 4.032 20 O -0.904 6.904 21 Si 0.929 3.071 22 H -0.216 1.216 23 H -0.274 1.274 24 H -0.322 1.322 25 C -0.088 4.088 26 C -0.103 4.103 27 C -0.124 4.124 28 C -0.161 4.161 29 C -0.115 4.115 30 O -0.170 6.170 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.114 0.886 34 H 0.182 0.818 35 H 0.160 0.840 36 H 0.415 0.585 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.083 0.917 41 H 0.050 0.950 42 H 0.046 0.954 43 H 0.407 0.593 44 H 0.015 0.985 45 H 0.068 0.932 46 H 0.024 0.976 47 H 0.048 0.952 48 H 0.075 0.925 49 H 0.025 0.975 50 H 0.068 0.932 51 H 0.083 0.917 52 H 0.066 0.934 53 H 0.092 0.908 54 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.151 30.237 -4.649 33.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.028 4.028 3 C -0.251 4.251 4 C -0.143 4.143 5 C -0.162 4.162 6 C 0.390 3.610 7 O -0.440 6.440 8 N -0.351 5.351 9 C 0.039 3.961 10 H 0.100 0.900 11 C -0.163 4.163 12 C -0.156 4.156 13 C -0.112 4.112 14 H 0.117 0.883 15 C -0.004 4.004 16 N -0.395 5.395 17 C 0.276 3.724 18 O -0.480 6.480 19 C -0.133 4.133 20 O -0.850 6.850 21 Si 0.757 3.243 22 H -0.141 1.141 23 H -0.199 1.199 24 H -0.251 1.251 25 C -0.089 4.089 26 C -0.161 4.161 27 C -0.181 4.181 28 C -0.218 4.218 29 C -0.154 4.154 30 O -0.066 6.066 31 H 0.120 0.880 32 H 0.105 0.895 33 H 0.133 0.867 34 H 0.199 0.801 35 H 0.178 0.822 36 H 0.253 0.747 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.102 0.898 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.246 0.754 44 H 0.035 0.965 45 H 0.087 0.913 46 H 0.043 0.957 47 H 0.067 0.933 48 H 0.094 0.906 49 H 0.044 0.956 50 H 0.086 0.914 51 H 0.102 0.898 52 H 0.084 0.916 53 H 0.111 0.889 54 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.868 29.715 -4.104 33.047 hybrid contribution 0.252 -0.677 0.610 0.946 sum -13.616 29.038 -3.493 32.261 Atomic orbital electron populations 1.20666 0.81590 1.05949 1.05357 1.23685 0.95843 0.83487 0.99763 1.21945 0.91298 1.01327 1.10516 1.22233 0.99880 0.92898 0.99248 1.21859 0.82204 0.94806 1.17377 1.16722 0.85927 0.82211 0.76149 1.90861 1.23560 1.76848 1.52763 1.46043 1.11075 1.04671 1.73310 1.21680 0.87814 0.89257 0.97340 0.89965 1.22692 1.01586 0.96261 0.95742 1.22585 0.98465 0.94257 1.00254 1.22180 0.99977 0.92054 0.97001 0.88281 1.21406 1.00112 0.87881 0.91009 1.46774 1.67683 1.11624 1.13383 1.23938 0.73697 0.83448 0.91314 1.90386 1.48944 1.82521 1.26191 1.24428 1.03366 0.92117 0.93432 1.94945 1.87341 1.25520 1.77227 0.86702 0.79796 0.80749 0.77081 1.14087 1.19932 1.25143 1.21016 0.96413 0.95823 0.95689 1.21439 0.96796 0.98935 0.98910 1.21671 1.01011 0.98163 0.97300 1.22313 1.02320 0.95931 1.01270 1.22350 1.03577 0.91436 0.98032 1.83988 1.15566 1.35925 1.71168 0.88046 0.89504 0.86734 0.80053 0.82190 0.74742 0.91509 0.90191 0.91487 0.89829 0.93191 0.93586 0.75360 0.96547 0.91269 0.95676 0.93333 0.90571 0.95619 0.91359 0.89822 0.91560 0.88926 0.90215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.25 10.41 71.23 0.74 0.50 16 2 C 0.02 0.29 7.31 24.97 0.18 0.47 16 3 C -0.23 -2.81 10.77 22.07 0.24 -2.58 16 4 C -0.12 -2.13 10.62 22.39 0.24 -1.89 16 5 C -0.11 -2.18 7.13 24.07 0.17 -2.01 16 6 C 0.60 13.51 7.78 86.44 0.67 14.18 16 7 O -0.56 -16.29 16.52 -4.32 -0.07 -16.36 16 8 N -0.70 -12.19 5.03 -443.08 -2.23 -14.42 16 9 C 0.14 2.64 3.24 45.72 0.15 2.79 16 10 H 0.08 1.80 7.57 -2.39 -0.02 1.78 16 11 C -0.12 -2.23 6.53 31.67 0.21 -2.02 16 12 C -0.12 -2.29 6.19 31.89 0.20 -2.09 16 13 C -0.09 -1.94 2.89 -9.72 -0.03 -1.97 16 14 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 15 C 0.12 3.83 4.96 86.38 0.43 4.26 16 16 N -0.73 -28.64 3.84 -463.06 -1.78 -30.42 16 17 C 0.49 26.23 4.64 87.66 0.41 26.63 16 18 O -0.60 -38.81 16.52 15.89 0.26 -38.54 16 19 C -0.03 -1.80 0.30 29.85 0.01 -1.79 16 20 O -0.90 -67.06 15.87 -130.07 -2.06 -69.13 16 21 Si 0.93 44.43 22.29 68.60 1.53 45.96 16 22 H -0.22 -7.43 6.01 99.48 0.60 -6.83 16 23 H -0.27 -13.08 6.37 99.48 0.63 -12.45 16 24 H -0.32 -17.29 7.11 99.48 0.71 -16.58 16 25 C -0.09 -4.03 0.37 -52.18 -0.02 -4.05 16 26 C -0.10 -4.86 8.07 71.98 0.58 -4.28 16 27 C -0.12 -5.37 7.85 71.98 0.57 -4.80 16 28 C -0.16 -5.25 6.81 71.98 0.49 -4.76 16 29 C -0.12 -2.01 6.14 31.32 0.19 -1.82 16 30 O -0.17 -2.78 10.40 -5.07 -0.05 -2.83 16 31 H 0.10 0.09 8.14 -2.39 -0.02 0.07 16 32 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 33 H 0.11 -0.10 8.14 -2.39 -0.02 -0.12 16 34 H 0.18 1.11 8.06 -2.91 -0.02 1.09 16 35 H 0.16 2.65 8.06 -2.91 -0.02 2.63 16 36 H 0.42 5.45 8.08 -92.71 -0.75 4.70 16 37 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.08 1.31 8.05 -2.39 -0.02 1.29 16 39 H 0.07 1.45 7.97 -2.39 -0.02 1.43 16 40 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 41 H 0.05 1.72 8.02 -2.39 -0.02 1.70 16 42 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.41 13.28 4.66 -92.71 -0.43 12.84 16 44 H 0.02 0.87 7.71 -2.39 -0.02 0.85 16 45 H 0.07 2.57 8.14 -2.38 -0.02 2.55 16 46 H 0.02 1.19 7.19 -2.39 -0.02 1.17 16 47 H 0.05 1.98 5.59 -2.39 -0.01 1.96 16 48 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 49 H 0.02 1.28 7.66 -2.38 -0.02 1.26 16 50 H 0.07 2.10 5.77 -2.39 -0.01 2.09 16 51 H 0.08 2.17 8.13 -2.39 -0.02 2.15 16 52 H 0.07 1.96 4.94 -2.39 -0.01 1.95 16 53 H 0.09 1.29 7.62 -2.39 -0.02 1.28 16 54 H 0.08 1.49 7.84 -2.39 -0.02 1.47 16 Total: -1.00 -95.16 418.17 1.33 -93.83 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: 0.31 Total: 17.16 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: 5.42 Total: 14.76 kcal Atomic # 7 Polarization: -40.83 SS G_CDS: -4.01 Total: -44.84 kcal Atomic # 8 Polarization: -124.94 SS G_CDS: -1.93 Total: -126.86 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.53 Total: 45.96 kcal Total: -95.16 1.33 -93.83 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001739005138.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.179 kcal (2) G-P(sol) polarization free energy of solvation -95.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.27 seconds