Wall clock time and date at job start Thu Mar 26 2020 08:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34767 * 120.00314 * 2 1 4 4 O 1.21286 * 120.00233 * 185.99211 * 3 2 1 5 5 C 1.50701 * 119.99806 * 5.99628 * 3 2 1 6 6 O 1.42891 * 109.47486 * 36.06321 * 5 3 2 7 7 Si 1.86303 * 109.46816 * 276.06174 * 5 3 2 8 8 H 1.48506 * 109.46903 * 64.88235 * 7 5 3 9 9 H 1.48497 * 109.47195 * 184.88282 * 7 5 3 10 10 H 1.48500 * 109.47227 * 304.88349 * 7 5 3 11 11 C 1.53007 * 109.47178 * 156.06712 * 5 3 2 12 12 C 1.52995 * 109.47008 * 66.64823 * 11 5 3 13 13 C 1.53006 * 109.46781 * 186.65023 * 11 5 3 14 14 C 1.52997 * 109.46761 * 306.64785 * 11 5 3 15 15 C 1.46509 * 119.99786 * 180.02562 * 2 1 3 16 16 H 1.09000 * 112.84458 * 245.61543 * 15 2 1 17 17 C 1.53782 * 113.61326 * 16.92341 * 15 2 1 18 18 C 1.53776 * 87.08089 * 89.11704 * 17 15 2 19 19 H 1.09001 * 113.68701 * 139.99245 * 18 17 15 20 20 N 1.46496 * 113.61350 * 270.88026 * 18 17 15 21 21 C 1.34782 * 120.00287 * 249.52866 * 20 18 17 22 22 O 1.21278 * 119.99647 * 5.28383 * 21 20 18 23 23 C 1.50695 * 120.00161 * 185.27232 * 21 20 18 24 24 C 1.53001 * 112.84642 * 55.75016 * 23 21 20 25 25 F 1.39894 * 109.47238 * 303.54460 * 24 23 21 26 26 F 1.39904 * 109.47346 * 63.54658 * 24 23 21 27 27 C 1.53779 * 113.61896 * 284.44650 * 23 21 20 28 28 C 1.53778 * 87.08123 * 220.01917 * 27 23 21 29 29 C 1.53780 * 87.08434 * 25.42984 * 28 27 23 30 30 C 1.53776 * 87.08241 * 25.43034 * 18 17 15 31 31 H 1.09008 * 109.47256 * 264.94261 * 1 2 3 32 32 H 1.09001 * 109.47632 * 144.94485 * 1 2 3 33 33 H 1.08996 * 109.47514 * 24.94092 * 1 2 3 34 34 H 1.09003 * 109.47420 * 64.33324 * 12 11 5 35 35 H 1.09000 * 109.46998 * 184.32638 * 12 11 5 36 36 H 1.08995 * 109.47505 * 304.32903 * 12 11 5 37 37 H 1.08997 * 109.46960 * 59.99912 * 13 11 5 38 38 H 1.08997 * 109.46594 * 179.97438 * 13 11 5 39 39 H 1.08996 * 109.46853 * 299.99788 * 13 11 5 40 40 H 1.09003 * 109.46829 * 60.00598 * 14 11 5 41 41 H 1.08997 * 109.47038 * 179.97438 * 14 11 5 42 42 H 1.08997 * 109.47506 * 300.00410 * 14 11 5 43 43 H 1.09008 * 113.61418 * 203.66925 * 17 15 2 44 44 H 1.08995 * 113.61649 * 334.56383 * 17 15 2 45 45 H 0.97006 * 119.99936 * 69.53185 * 20 18 17 46 46 H 1.09007 * 109.47455 * 183.54491 * 24 23 21 47 47 H 1.09005 * 113.61185 * 334.56419 * 27 23 21 48 48 H 1.08997 * 113.61748 * 105.46771 * 27 23 21 49 49 H 1.09010 * 113.61361 * 270.88304 * 28 27 23 50 50 H 1.09004 * 113.69738 * 139.98772 * 28 27 23 51 51 H 1.08999 * 113.61809 * 220.02517 * 29 28 27 52 52 H 1.08997 * 113.69422 * 89.12640 * 29 28 27 53 53 H 1.09000 * 113.61610 * 220.01805 * 30 18 17 54 54 H 1.09004 * 113.69277 * 89.12559 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3468 1.1699 -0.1096 5 6 1.3916 2.4686 0.1363 6 8 0.2866 2.2927 1.0250 7 14 0.7655 3.0031 -1.5349 8 1 -0.2356 2.0220 -2.0255 9 1 0.1324 4.3416 -1.4215 10 1 1.9005 3.0718 -2.4900 11 6 2.3304 3.5396 0.6956 12 6 3.4225 3.8469 -0.3308 13 6 1.5341 4.8126 0.9897 14 6 2.9731 3.0302 1.9872 15 6 2.1975 -1.2688 -0.0006 16 1 2.7682 -1.4284 0.9143 17 6 1.3380 -2.4761 -0.4113 18 6 1.7502 -2.1762 -1.8621 19 1 1.9595 -3.0691 -2.4513 20 7 0.8534 -1.2410 -2.5456 21 6 0.0592 -1.6763 -3.5438 22 8 0.0158 -2.8581 -3.8125 23 6 -0.7750 -0.6945 -4.3256 24 6 0.0574 0.4271 -4.9502 25 9 0.7793 1.0851 -3.9487 26 9 0.9454 -0.1160 -5.8849 27 6 -2.0133 -0.1941 -3.5636 28 6 -2.7766 -0.2967 -4.8946 29 6 -1.7485 -1.3614 -5.3117 30 6 3.0099 -1.5105 -1.2836 31 1 -0.3634 -0.0906 1.0237 32 1 -0.3634 -0.8412 -0.5902 33 1 -0.3634 0.9318 -0.4333 34 1 2.9711 4.2817 -1.2226 35 1 4.1348 4.5525 0.0967 36 1 3.9398 2.9254 -0.5979 37 1 0.7560 4.5936 1.7210 38 1 2.2028 5.5753 1.3886 39 1 1.0762 5.1754 0.0695 40 1 3.5404 2.1233 1.7776 41 1 3.6422 3.7929 2.3854 42 1 2.1950 2.8112 2.7185 43 1 1.7155 -3.4281 -0.0379 44 1 0.2734 -2.3386 -0.2225 45 1 0.8311 -0.3083 -2.2797 46 1 -0.6040 1.1369 -5.4472 47 1 -2.3678 -0.8890 -2.8023 48 1 -1.9156 0.8266 -3.1939 49 1 -2.7320 0.6122 -5.4948 50 1 -3.7896 -0.6854 -4.7898 51 1 -1.4368 -1.2831 -6.3533 52 1 -2.0294 -2.3760 -5.0291 53 1 3.2950 -0.5934 -1.7992 54 1 3.8455 -2.1973 -1.1484 RHF calculation, no. of doubly occupied orbitals= 72 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001739129206.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 26 2020 08:42:36 Heat of formation + Delta-G solvation = -184.515490 kcal Electronic energy + Delta-G solvation = -40260.744398 eV Core-core repulsion = 35256.298907 eV Total energy + Delta-G solvation = -5004.445491 eV No. of doubly occupied orbitals = 72 Molecular weight (most abundant/longest-lived isotopes) = 375.205 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -50.25523 -48.25464 -42.11709 -41.09687 -39.73818 -38.52273 -37.00539 -35.37249 -34.23941 -31.68019 -29.70429 -28.18892 -28.01185 -27.98702 -26.92655 -26.68498 -26.21269 -25.81141 -24.36773 -22.49255 -21.38807 -20.49255 -19.68820 -19.23570 -18.79290 -18.47282 -18.34320 -17.47716 -17.29635 -17.15045 -16.89749 -16.67687 -15.91416 -15.83485 -15.57624 -15.47256 -15.34912 -15.03894 -14.98288 -14.80002 -14.73498 -14.30672 -14.11527 -13.91918 -13.80175 -13.63110 -13.57440 -13.39425 -13.11787 -13.01860 -12.91764 -12.88329 -12.74409 -12.64539 -12.35413 -12.33103 -12.07594 -11.82925 -11.77253 -11.67480 -11.63778 -11.50613 -11.43099 -11.40828 -11.20013 -10.91448 -10.89273 -10.23459 -10.15582 -9.30896 -7.84660 -7.46977 1.25351 1.36943 1.41704 1.58592 1.92189 1.96872 2.34555 2.50246 2.77739 2.90769 3.05984 3.16428 3.36499 3.51101 3.57499 3.66133 3.76091 3.84797 3.95174 4.05451 4.27037 4.27152 4.31996 4.35147 4.40652 4.60899 4.63067 4.65219 4.68233 4.69236 4.72993 4.78194 4.86218 4.88620 4.93012 4.93827 4.94851 4.98924 5.01049 5.04556 5.08125 5.10046 5.23270 5.23966 5.28480 5.30117 5.40729 5.42881 5.63337 5.76726 5.84793 6.06764 6.30309 6.77376 6.93763 7.54570 8.02338 Molecular weight = 375.21amu Principal moments of inertia in cm(-1) A = 0.011616 B = 0.004724 C = 0.004058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.817429 B = 5925.740099 C = 6898.654545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.599 5.599 3 C 0.495 3.505 4 O -0.585 6.585 5 C -0.014 4.014 6 O -0.872 6.872 7 Si 0.930 3.070 8 H -0.261 1.261 9 H -0.281 1.281 10 H -0.300 1.300 11 C -0.080 4.080 12 C -0.155 4.155 13 C -0.119 4.119 14 C -0.107 4.107 15 C 0.106 3.894 16 H 0.073 0.927 17 C -0.140 4.140 18 C 0.114 3.886 19 H 0.110 0.890 20 N -0.711 5.711 21 C 0.529 3.471 22 O -0.557 6.557 23 C -0.188 4.188 24 C 0.273 3.727 25 F -0.215 7.215 26 F -0.206 7.206 27 C -0.124 4.124 28 C -0.122 4.122 29 C -0.093 4.093 30 C -0.144 4.144 31 H 0.036 0.964 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.033 0.967 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.044 0.956 38 H 0.060 0.940 39 H 0.034 0.966 40 H 0.040 0.960 41 H 0.051 0.949 42 H 0.028 0.972 43 H 0.135 0.865 44 H 0.078 0.922 45 H 0.404 0.596 46 H 0.169 0.831 47 H 0.097 0.903 48 H 0.079 0.921 49 H 0.110 0.890 50 H 0.102 0.898 51 H 0.093 0.907 52 H 0.097 0.903 53 H 0.051 0.949 54 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.086 -5.845 -10.679 13.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.333 5.333 3 C 0.288 3.712 4 O -0.468 6.468 5 C -0.115 4.115 6 O -0.819 6.819 7 Si 0.760 3.240 8 H -0.187 1.187 9 H -0.207 1.207 10 H -0.229 1.229 11 C -0.081 4.081 12 C -0.212 4.212 13 C -0.176 4.176 14 C -0.164 4.164 15 C 0.002 3.998 16 H 0.091 0.909 17 C -0.178 4.178 18 C 0.009 3.991 19 H 0.128 0.872 20 N -0.363 5.363 21 C 0.315 3.685 22 O -0.436 6.436 23 C -0.192 4.192 24 C 0.220 3.780 25 F -0.197 7.197 26 F -0.187 7.187 27 C -0.162 4.162 28 C -0.159 4.159 29 C -0.131 4.131 30 C -0.183 4.183 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.052 0.948 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.063 0.937 38 H 0.079 0.921 39 H 0.053 0.947 40 H 0.059 0.941 41 H 0.070 0.930 42 H 0.047 0.953 43 H 0.153 0.847 44 H 0.097 0.903 45 H 0.242 0.758 46 H 0.186 0.814 47 H 0.115 0.885 48 H 0.098 0.902 49 H 0.128 0.872 50 H 0.120 0.880 51 H 0.111 0.889 52 H 0.115 0.885 53 H 0.070 0.930 54 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.970 -6.451 -11.522 14.110 hybrid contribution 0.660 0.580 0.921 1.273 sum -4.310 -5.872 -10.601 12.862 Atomic orbital electron populations 1.21750 0.79119 1.01290 1.00775 1.47607 1.07361 1.04650 1.73663 1.23498 0.87681 0.87977 0.72040 1.90320 1.15965 1.87916 1.52575 1.23871 0.94046 0.88967 1.04643 1.94937 1.38656 1.90698 1.57638 0.86676 0.79720 0.78841 0.78778 1.18653 1.20704 1.22913 1.20859 0.95062 0.96361 0.95816 1.22204 0.98863 1.02403 0.97766 1.21623 0.99522 0.96139 1.00352 1.21509 0.98363 0.99884 0.96638 1.22070 0.94873 0.84713 0.98131 0.90932 1.23767 1.01009 0.98330 0.94707 1.22015 0.90319 0.93174 0.93561 0.87208 1.46285 1.40745 1.13839 1.35456 1.20412 0.79257 0.89131 0.79661 1.90627 1.66343 1.17792 1.68844 1.23644 0.96638 0.96881 1.02069 1.22186 0.84843 0.91670 0.79310 1.92972 1.81228 1.82171 1.63316 1.92983 1.72084 1.87675 1.65983 1.23048 0.91412 1.02599 0.99155 1.22963 0.99367 0.99600 0.93995 1.22794 0.92378 0.99986 0.97917 1.23628 0.97306 1.01153 0.96240 0.94570 0.92240 0.90960 0.94803 0.92107 0.90911 0.93713 0.92071 0.94692 0.94129 0.92997 0.95271 0.84664 0.90340 0.75817 0.81448 0.88491 0.90250 0.87193 0.87955 0.88855 0.88454 0.93024 0.85360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.88 7.03 127.77 0.90 5.77 16 2 N -0.60 -26.70 2.14 -819.64 -1.75 -28.45 16 3 C 0.50 25.16 4.76 87.66 0.42 25.58 16 4 O -0.58 -30.32 10.86 -3.05 -0.03 -30.35 16 5 C -0.01 -0.75 0.12 29.85 0.00 -0.74 16 6 O -0.87 -52.75 13.37 -148.98 -1.99 -54.75 16 7 Si 0.93 45.33 19.28 68.60 1.32 46.66 16 8 H -0.26 -11.61 5.60 99.48 0.56 -11.06 16 9 H -0.28 -13.69 6.25 99.48 0.62 -13.07 16 10 H -0.30 -14.65 6.74 99.48 0.67 -13.98 16 11 C -0.08 -3.92 0.35 -52.18 -0.02 -3.94 16 12 C -0.16 -6.96 7.51 71.98 0.54 -6.42 16 13 C -0.12 -5.46 7.91 71.98 0.57 -4.89 16 14 C -0.11 -5.11 7.99 71.98 0.58 -4.53 16 15 C 0.11 3.83 4.15 45.51 0.19 4.02 16 16 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 17 C -0.14 -3.97 7.16 31.12 0.22 -3.75 16 18 C 0.11 3.58 4.33 45.51 0.20 3.78 16 19 H 0.11 3.26 7.46 -2.39 -0.02 3.24 16 20 N -0.71 -24.59 3.58 -440.06 -1.57 -26.16 16 21 C 0.53 17.18 6.74 87.65 0.59 17.77 16 22 O -0.56 -19.93 15.57 -3.02 -0.05 -19.98 16 23 C -0.19 -4.80 0.84 -52.40 -0.04 -4.84 16 24 C 0.27 7.08 4.51 71.98 0.32 7.40 16 25 F -0.22 -7.58 12.08 44.97 0.54 -7.03 16 26 F -0.21 -5.89 17.20 44.97 0.77 -5.11 16 27 C -0.12 -2.71 7.22 31.12 0.22 -2.48 16 28 C -0.12 -1.68 7.73 31.12 0.24 -1.44 16 29 C -0.09 -1.73 6.93 31.12 0.22 -1.51 16 30 C -0.14 -4.78 7.15 31.12 0.22 -4.56 16 31 H 0.04 1.65 7.96 -2.38 -0.02 1.63 16 32 H 0.06 2.17 4.58 -2.39 -0.01 2.16 16 33 H 0.07 3.46 3.61 -2.39 -0.01 3.45 16 34 H 0.03 1.47 5.72 -2.39 -0.01 1.45 16 35 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.07 3.50 5.29 -2.39 -0.01 3.49 16 37 H 0.04 2.21 7.52 -2.39 -0.02 2.20 16 38 H 0.06 2.34 8.14 -2.39 -0.02 2.33 16 39 H 0.03 1.57 5.81 -2.39 -0.01 1.56 16 40 H 0.04 2.02 5.88 -2.39 -0.01 2.01 16 41 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.03 1.48 7.87 -2.39 -0.02 1.46 16 43 H 0.14 2.86 8.14 -2.38 -0.02 2.84 16 44 H 0.08 2.34 5.79 -2.39 -0.01 2.32 16 45 H 0.40 15.53 4.69 -92.70 -0.43 15.09 16 46 H 0.17 2.72 7.31 -2.38 -0.02 2.71 16 47 H 0.10 2.15 8.09 -2.38 -0.02 2.13 16 48 H 0.08 1.89 7.99 -2.39 -0.02 1.87 16 49 H 0.11 1.03 7.60 -2.38 -0.02 1.01 16 50 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 51 H 0.09 1.48 8.10 -2.39 -0.02 1.46 16 52 H 0.10 2.01 7.53 -2.39 -0.02 1.99 16 53 H 0.05 2.08 7.19 -2.39 -0.02 2.06 16 54 H 0.13 3.37 8.14 -2.38 -0.02 3.35 16 Total: -1.00 -71.74 388.11 3.60 -68.15 By element: Atomic # 1 Polarization: 30.81 SS G_CDS: 0.99 Total: 31.80 kcal Atomic # 6 Polarization: 19.86 SS G_CDS: 5.37 Total: 25.23 kcal Atomic # 7 Polarization: -51.28 SS G_CDS: -3.33 Total: -54.61 kcal Atomic # 8 Polarization: -103.00 SS G_CDS: -2.07 Total: -105.07 kcal Atomic # 9 Polarization: -13.46 SS G_CDS: 1.32 Total: -12.15 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.32 Total: 46.66 kcal Total: -71.74 3.60 -68.15 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001739129206.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.370 kcal (2) G-P(sol) polarization free energy of solvation -71.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds